Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

22734658 .. 22735721

Gene Structure 1064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAAGGGCTTCTGCTCCGAGTTGAAGTGCTTTGTATATAAATTCATGGAAAAATGTAGCCTGCAGGACGTTTTACTATCCTCCAATGAGAATTCTAAAAACAAAACGATCCCGTGGCACGATCGAATTCGAATTGCCACAGAAGTTTGCTCGGTTGTGTGCTACCTTCACGAGGCCAGTTGTGTGCTAGGTCAACGCCACCTCTGCCCATCCAACATCCTCATTGATCGCAACCTCGTCGCCAAGGTGGATTTTGTTGAGCAAAAGTACGACGGTAAATGCAATTTTGAAGGGGATGTAAAGGCTTTTGGGAAGGTGATTTTGAGTCTCTTGACTGCGACTGGGGGTGATGTTTGTCTCTCTGATCTCTTTGCTGTACTGGATAAGAGGGCTGGTCGATGGCCAATGGATTTGGCAGAGAAACTTCTGAAGTTGTCTGAAACTTGTAATTCCTTTAAACCTAGCGATTATAAGGACTCTTCGTATATGCTCAAAGTAAGGGAAGAGCTTACTGAAATTAGAGAAAATGCTGATGATATAATCAGACAGCGGTCAAGGACATATGAAACGTTTTGTGGTGGTGCTTATGTAGAGGATTCCAACATCCCAAATGCTTTCGTCTGCCCAATATTTAAGGAAGTAATGAAGGATCCACATGTGGCGGCTGACGGATTTTCCTATGAGCGAAAAGCCATAGCTAAATGGTTGAAATTGGGAAGTTATAGGTCACCAATGACAAATTTGGTGCTTGAGCATAAAGTTCTTAGGCCCAATCACACCCTTCTGTTTCTCATCCAAGATTGGCAAAGTGCAAATTCATCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

275

Amino Acids

31.32

Weight (kDa)

7.48

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 83	2e-06	Protein tyrosine and serine/threonine kinase
U-box	PF04564	202 - 273	5.4e-16	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AciI	CCGC	2 cut(s)	550, 662
AclI	AACGTT	1 cut(s)	569
AclWI	GGATC	3 cut(s)	103, 644, 657
AcoI	YGGCCR	1 cut(s)	401
AcsI	RAATTY	5 cut(s)	41, 91, 126, 739, 814
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	269, 378
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	655
AgsI	TTSAA	3 cut(s)	25, 290, 709
AluBI	AGCT	2 cut(s)	508, 698
AluI	AGCT	2 cut(s)	508, 698
Alw26I	GTCTC	2 cut(s)	332, 362
AlwI	GGATC	3 cut(s)	103, 644, 657
AoxI	GGCC	3 cut(s)	174, 401, 767
ApoI	RAATTY	5 cut(s)	41, 91, 126, 739, 814
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	768
AsuHPI	GGTGA	3 cut(s)	328, 359, 720
AsuII	TTCGAA	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	403
BamHI	GGATCC	1 cut(s)	649
BauI	CACGAG	1 cut(s)	170
BccI	CCATC	2 cut(s)	217, 393
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BcoDI	GTCTC	2 cut(s)	332, 362
BfaI	CTAG	2 cut(s)	188, 462
BfmI	CTRYAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	663
BlsI	GCNGC	1 cut(s)	664
BmgT120I	GGNCC	1 cut(s)	768
BmiI	GGNNCC	1 cut(s)	651
BmrI	ACTGGG	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	351
BoxI	GACNNNNGTC	1 cut(s)	550
Bpu14I	TTCGAA	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	770
BsaJI	CCNNGG	2 cut(s)	113, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	3 cut(s)	177, 346, 384
BseDI	CCNNGG	2 cut(s)	113, 243
BseGI	GGATG	5 cut(s)	209, 216, 301, 603, 792
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	3 cut(s)	177, 346, 384
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	176, 403, 769
BsiEI	CGRYCG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	332, 362
BsnI	GGCC	3 cut(s)	176, 403, 769
Bsp119I	TTCGAA	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	108, 121, 226, 364, 649
BspACI	CCGC	2 cut(s)	550, 662
BspANI	GGCC	3 cut(s)	176, 403, 769
BspLI	GGNNCC	1 cut(s)	651
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	3 cut(s)	103, 644, 657
BspQI	GCTCTTC	1 cut(s)	498
BspT104I	TTCGAA	1 cut(s)	130
BsrI	ACTGG	3 cut(s)	177, 346, 384
BssECI	CCNNGG	2 cut(s)	113, 243
BssMI	GATC	5 cut(s)	108, 121, 226, 364, 649
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	2 cut(s)	484, 498
BstBI	TTCGAA	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	764
BstDSI	CCRYGG	1 cut(s)	113
BstEII	GGTNACC	1 cut(s)	726
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	5 cut(s)	209, 216, 301, 603, 792
BstKTI	GATC	5 cut(s)	111, 124, 229, 367, 652
BstMAI	GTCTC	2 cut(s)	332, 362
BstMBI	GATC	5 cut(s)	108, 121, 226, 364, 649
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	659
BstPAI	GACNNNNGTC	1 cut(s)	550
BstPI	GGTNACC	1 cut(s)	726
BstSFI	CTRYAG	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	176, 403, 769
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	5 cut(s)	209, 216, 301, 603, 792
Cac8I	GCNNGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	768
Csp6I	GTAC	2 cut(s)	268, 377
CviAII	CATG	3 cut(s)	46, 656, 825
CviQI	GTAC	2 cut(s)	268, 377
DdeI	CTNAG	1 cut(s)	764
DpnI	GATC	5 cut(s)	110, 123, 228, 366, 651
DpnII	GATC	5 cut(s)	108, 121, 226, 364, 649
DraI	TTTAAA	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	401
Eam1104I	CTCTTC	2 cut(s)	484, 498
EarI	CTCTTC	2 cut(s)	484, 498
Eco130I	CCWWGG	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	449
Eco91I	GGTNACC	1 cut(s)	726
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	726
EcoRI	GAATTC	2 cut(s)	91, 126
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	3 cut(s)	49, 659, 828
FatI	CATG	3 cut(s)	45, 655, 824
FauNDI	CATATG	1 cut(s)	562
Fnu4HI	GCNGC	1 cut(s)	663
FokI	GGATG	5 cut(s)	196, 203, 308, 590, 779
Fsp4HI	GCNGC	1 cut(s)	663
FspBI	CTAG	2 cut(s)	188, 462
GluI	GCNGC	1 cut(s)	663
HaeIII	GGCC	3 cut(s)	176, 403, 769
Hin1II	CATG	3 cut(s)	49, 659, 828
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	3 cut(s)	325, 476, 596
HphI	GGTGA	3 cut(s)	328, 359, 720
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	5 cut(s)	19, 364, 429, 439, 545
Hpy188III	TCNNGA	2 cut(s)	170, 331
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	2 cut(s)	242, 275
HpyAV	CCTTC	5 cut(s)	176, 284, 307, 640, 791
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	2 cut(s)	69, 569
HpyCH4V	TGCA	3 cut(s)	64, 282, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	1 cut(s)	764
HpySE526I	ACGT	2 cut(s)	69, 569
Hsp92II	CATG	3 cut(s)	49, 659, 828
Kzo9I	GATC	5 cut(s)	108, 121, 226, 364, 649
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	6 cut(s)	50, 74, 190, 327, 365, 378
MaeI	CTAG	2 cut(s)	188, 462
MaeII	ACGT	2 cut(s)	69, 569
MaeIII	GTNAC	1 cut(s)	726
MalI	GATC	5 cut(s)	110, 123, 228, 366, 651
MboI	GATC	5 cut(s)	108, 121, 226, 364, 649
MboII	GAAGA	2 cut(s)	471, 515
MflI	RGATCY	1 cut(s)	649
MlsI	TGGCCA	1 cut(s)	403
MluNI	TGGCCA	1 cut(s)	403
MlyI	GAGTC	2 cut(s)	334, 470
MmeI	TCCRAC	2 cut(s)	237, 624
MnlI	CCTC	7 cut(s)	91, 166, 212, 230, 245, 381, 586
Mox20I	TGGCCA	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	2 cut(s)	456, 633
MslI	CAYNNNNRTG	1 cut(s)	823
Msp20I	TGGCCA	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	550
MwoI	GCNNNNNNNGC	1 cut(s)	204
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	5 cut(s)	108, 121, 226, 364, 649
NlaIII	CATG	3 cut(s)	49, 659, 828
NlaIV	GGNNCC	1 cut(s)	651
NmuCI	GTSAC	1 cut(s)	726
NspI	RCATGY	1 cut(s)	659
NspV	TTCGAA	1 cut(s)	130
PciI	ACATGT	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	1 cut(s)	664
Ple19I	CGATCG	1 cut(s)	124
PleI	GAGTC	2 cut(s)	333, 470
PpsI	GAGTC	2 cut(s)	333, 470
PscI	ACATGT	1 cut(s)	655
PshAI	GACNNNNGTC	1 cut(s)	550
PsiI	TTATAA	1 cut(s)	471
Psp1406I	AACGTT	1 cut(s)	569
PspEI	GGTNACC	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	1 cut(s)	768
PstI	CTGCAG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	649
PvuI	CGATCG	1 cut(s)	124
RsaI	GTAC	2 cut(s)	269, 378
RsaNI	GTAC	2 cut(s)	268, 377
RseI	CAYNNNNRTG	1 cut(s)	823
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	456, 633
SatI	GCNGC	1 cut(s)	663
Sau3AI	GATC	5 cut(s)	108, 121, 226, 364, 649
Sau96I	GGNCC	1 cut(s)	768
SbfI	CCTGCAGG	1 cut(s)	66
SchI	GAGTC	2 cut(s)	334, 470
SdaI	CCTGCAGG	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	823
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse8387I	CCTGCAGG	1 cut(s)	66
SsiI	CCGC	2 cut(s)	550, 662
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	2 cut(s)	188, 462
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	2 cut(s)	72, 572
TaqI	TCGA	3 cut(s)	124, 130, 397
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	1 cut(s)	665
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	2 cut(s)	456, 633
Tru9I	TTAA	2 cut(s)	456, 633
TseFI	GTSAC	1 cut(s)	726
Tsp45I	GTSAC	1 cut(s)	726
TspDTI	ATGAA	5 cut(s)	17, 34, 579, 659, 807
TspGWI	ACGGA	1 cut(s)	684
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	5 cut(s)	41, 91, 126, 739, 814
XceI	RCATGY	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	188, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.