FvH4_1g19563

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003787
Physical Location & Seq
Forward (+)
11822032 .. 11822693
662 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19563.t1

Sequence Viewer

Length: 333 bp
ATGGAGCAGCTCACTCAACAAAAGGCTGACGAAATTTCCAGAGGAAGTGCAAGAACATATGATGTAGTTACCAGTGGTAGAGATCAGGCCTCCGACATTCCAAGACAATTTTACTGCCCCATATATAAGGAAGTGATGAAGGATCCATATGTAGCAGCTGATGGATTTTCATATGAGCGACAAGGCATAGAGAGATGGTTGCAAACCGGGCACGAGACATCACCAATGACCAATCTGAAGCTCGAGAATAAGATTCTCACCCCTAATGGTACCCTTAAGCTTCTTATCAAAGACTGGTACCGTGAAAGATCAGTTCCTCATCCAAATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MIF4G U-box

Protein Analysis

111

Amino Acids

12.75

Weight (kDa)

6.73

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 33 - 103 4.7e-19 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 269, 297
AccB1I GGYRCC 2 cut(s) 269, 297
AclWI GGATC 2 cut(s) 137, 150
AcsI RAATTY 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 2 cut(s) 271, 299
AflII CTTAAG 1 cut(s) 275
AluBI AGCT 4 cut(s) 10, 158, 241, 280
AluI AGCT 4 cut(s) 10, 158, 241, 280
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 2 cut(s) 137, 150
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 7, 155
ApoI RAATTY 1 cut(s) 33
Asp718I GGTACC 2 cut(s) 269, 297
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 213, 250
AvaI CYCGRG 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 213
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 2 cut(s) 269, 297
BauI CACGAG 1 cut(s) 212
BbvI GCAGC 2 cut(s) 19, 167
BccI CCATC 2 cut(s) 155, 189
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 209
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 8, 156
BlsI GCNGC 2 cut(s) 9, 157
Bme1390I CCNGG 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 144, 271, 299
BmrFI CCNGG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 72, 299
BseGI GGATG 1 cut(s) 319
BseNI ACTGG 2 cut(s) 72, 299
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 2 cut(s) 19, 167
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 2 cut(s) 269, 297
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 3 cut(s) 82, 142, 308
BspANI GGCC 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 144, 271, 299
BspPI GGATC 2 cut(s) 137, 150
BspT107I GGYRCC 2 cut(s) 269, 297
BspTI CTTAAG 1 cut(s) 275
BsrI ACTGG 2 cut(s) 72, 299
BssMI GATC 3 cut(s) 82, 142, 308
BssSI CACGAG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 302
BstAFI CTTAAG 1 cut(s) 275
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 3 cut(s) 85, 145, 311
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 3 cut(s) 82, 142, 308
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 19, 167
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 79
Csp6I GTAC 2 cut(s) 270, 298
CviJI RGCY 6 cut(s) 10, 26, 89, 158, 241, 280
CviKI_1 RGCY 6 cut(s) 10, 26, 89, 158, 241, 280
CviQI GTAC 2 cut(s) 270, 298
DpnI GATC 3 cut(s) 84, 144, 310
DpnII GATC 3 cut(s) 82, 142, 308
Eco147I AGGCCT 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 242
FauNDI CATATG 3 cut(s) 58, 148, 172
Fnu4HI GCNGC 2 cut(s) 8, 156
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 8, 156
GluI GCNGC 2 cut(s) 8, 156
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 253
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 213, 250
Hpy188I TCNGA 2 cut(s) 94, 237
Hpy188III TCNNGA 2 cut(s) 39, 244
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 50, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
KpnI GGTACC 2 cut(s) 273, 301
Kzo9I GATC 3 cut(s) 82, 142, 308
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 52, 71, 85, 220, 280
Lsp1109I GCAGC 2 cut(s) 19, 167
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 84, 144, 310
MboI GATC 3 cut(s) 82, 142, 308
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 2 cut(s) 33, 107
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 3 cut(s) 35, 100, 327
MseI TTAA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 208
NdeI CATATG 3 cut(s) 58, 148, 172
NdeII GATC 3 cut(s) 82, 142, 308
NlaIV GGNNCC 3 cut(s) 144, 271, 299
PaeR7I CTCGAG 1 cut(s) 242
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 9, 157
PspN4I GGNNCC 3 cut(s) 144, 271, 299
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 2 cut(s) 271, 299
RsaNI GTAC 2 cut(s) 270, 298
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 2 cut(s) 8, 156
Sau3AI GATC 3 cut(s) 82, 142, 308
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 213
SetI ASST 4 cut(s) 12, 160, 243, 282
Sfr274I CTCGAG 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 242, 275
SmoI CTYRAG 2 cut(s) 242, 275
Sse9I AATT 2 cut(s) 33, 107
SseBI AGGCCT 1 cut(s) 89
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 243
TasI AATT 2 cut(s) 33, 107
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 79
TseI GCWGC 2 cut(s) 7, 155
TspDTI ATGAA 2 cut(s) 152, 159
TspRI CASTG 1 cut(s) 79
Vha464I CTTAAG 1 cut(s) 275
XapI RAATTY 1 cut(s) 33
XhoI CTCGAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.