Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018570.1

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

1602 .. 4583

Gene Structure 2982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018570.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggccaggcttaaggagtacacggccgaggagatcgtattggctactgataatttttcttggcggttgagatcagagtctgtaggaatttggggcactgtttataaaggctatgttgacgatgcagcaatttccatcaaattcctcacctcccccgaggaacgtgtttttaactctatggttaagtccgtccgactaattagacaccctcaccttctttcaatgttgggcttctgctccgagctcaagtgctttgtctatgaacgtatagagtatagtcgcgtgctgcacgaggtcgtcaagcaaaaccttcattggcacgatcgcattcgtattgccagtgatatttgttcggccctgtcctacattattaagagggctaggtgtgaacctattgttcctgactatctcaatgcatccaacattcttgtcgatcgccatgttaatgccaaaatcaatgttgtactgaaaagatgcgacaagcctgatcttgcatgggatgtaaagacttttggctatctggttctgaatctcttaactggcattcccggaaattgtttttcttactgttatgttagatggtttgttggtttgccccacggtttggacaagacggcaggtcaatggcctatggatttggctgaggaattgatgaatgtgtgccgacgttgtgtagactgtaatcctagagatgattttaggaaaaagtacattatggtgataatagtgaaagagatgaaagatgttagggaaaaggctgatgaaattgtcagaggacgtgcaggaacaaatgatctagttaccagtggagcagtactgctgtcagagaaaaaatctaggcaccgcgaagctgtcggtggggagagcctgttcacaaggaccaagacgctgctaaaggctacttccagtcctggttctgcaaccggaaagaagggagaaaatgacgtggtgcccaaatcattttctaggtggtcaaatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

327

Amino Acids

37.33

Weight (kDa)

9.06

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	608
AccB1I	GGYRCC	2 cut(s)	840, 949
AccB7I	CCANNNNNTGG	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	2 cut(s)	282, 846
AciI	CCGC	2 cut(s)	64, 844
AcoI	YGGCCR	2 cut(s)	3, 24
AcsI	RAATTY	2 cut(s)	87, 140
AfaI	GTAC	4 cut(s)	20, 465, 710, 816
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflII	CTTAAG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	222
AhdI	GACNNNNNGTC	1 cut(s)	618
AjiI	CACGTC	2 cut(s)	779, 946
AjnI	CCWGG	2 cut(s)	5, 910
AloI	GAACNNNNNNTCC	2 cut(s)	854, 886
AluBI	AGCT	2 cut(s)	244, 851
AluI	AGCT	2 cut(s)	244, 851
Alw21I	GWGCWC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	3, 24, 354, 626
ApeKI	GCWGC	3 cut(s)	125, 286, 889
ApoI	RAATTY	2 cut(s)	87, 140
AspS9I	GGNCC	2 cut(s)	355, 879
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	3 cut(s)	139, 203, 730
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	879
BaeGI	GKGCMC	2 cut(s)	98, 954
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	840, 949
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	137, 273, 876
BccI	CCATC	2 cut(s)	143, 573
BceAI	ACGGC	2 cut(s)	39, 630
BciT130I	CCWGG	2 cut(s)	7, 912
BcnI	CCSGG	1 cut(s)	549
BfaI	CTAG	5 cut(s)	381, 687, 797, 837, 966
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	608
BisI	GCNGC	3 cut(s)	126, 287, 890
BlsI	GCNGC	3 cut(s)	127, 288, 891
BmcAI	AGTACT	1 cut(s)	816
Bme1390I	CCNGG	3 cut(s)	7, 549, 912
Bme18I	GGWCC	1 cut(s)	879
BmeRI	GACNNNNNGTC	1 cut(s)	618
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	2 cut(s)	779, 946
BmgT120I	GGNCC	2 cut(s)	355, 879
BmiI	GGNNCC	2 cut(s)	842, 951
BmrFI	CCNGG	3 cut(s)	7, 549, 912
BmsI	GCATC	3 cut(s)	112, 425, 464
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	549
BsaJI	CCNNGG	3 cut(s)	27, 156, 598
BsaWI	WCCGGW	1 cut(s)	923
BsaXI	ACNNNNNCTCC	2 cut(s)	854, 884
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse1I	ACTGG	4 cut(s)	339, 544, 804, 906
BseBI	CCWGG	2 cut(s)	7, 912
BseDI	CCNNGG	3 cut(s)	27, 156, 598
BseGI	GGATG	2 cut(s)	416, 505
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	4 cut(s)	339, 544, 804, 906
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	2 cut(s)	98, 954
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	137, 273, 876
BsgI	GTGCAG	2 cut(s)	272, 801
Bsh1236I	CGCG	2 cut(s)	282, 846
Bsh1285I	CGRYCG	3 cut(s)	27, 325, 436
BshFI	GGCC	4 cut(s)	5, 26, 356, 628
BshNI	GGYRCC	2 cut(s)	840, 949
BsiEI	CGRYCG	3 cut(s)	27, 325, 436
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	549, 924
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmI	GAATGC	2 cut(s)	327, 543
BsnI	GGCC	4 cut(s)	5, 26, 356, 628
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	98, 246, 954
Bsp143I	GATC	6 cut(s)	33, 71, 322, 433, 487, 793
BspACI	CCGC	2 cut(s)	64, 844
BspANI	GGCC	4 cut(s)	5, 26, 356, 628
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	2 cut(s)	282, 846
BspLI	GGNNCC	2 cut(s)	842, 951
BspMI	ACCTGC	1 cut(s)	608
BspT107I	GGYRCC	2 cut(s)	840, 949
BspTI	CTTAAG	1 cut(s)	11
BsrI	ACTGG	4 cut(s)	339, 544, 804, 906
BssECI	CCNNGG	3 cut(s)	27, 156, 598
BssMI	GATC	6 cut(s)	33, 71, 322, 433, 487, 793
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	7, 912
Bst4CI	ACNGT	4 cut(s)	100, 569, 602, 680
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	642
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	416, 505
BstFNI	CGCG	2 cut(s)	282, 846
BstKTI	GATC	6 cut(s)	36, 74, 325, 436, 490, 796
BstMBI	GATC	6 cut(s)	33, 71, 322, 433, 487, 793
BstMCI	CGRYCG	3 cut(s)	27, 325, 436
BstNI	CCWGG	2 cut(s)	7, 912
BstSCI	CCNGG	3 cut(s)	5, 547, 910
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	2 cut(s)	98, 954
BstUI	CGCG	2 cut(s)	282, 846
BstV1I	GCAGC	3 cut(s)	137, 273, 876
BstZI	CGGCCG	1 cut(s)	24
BsuRI	GGCC	4 cut(s)	5, 26, 356, 628
BtgI	CCRYGG	1 cut(s)	598
BtrI	CACGTC	2 cut(s)	779, 946
BtsCI	GGATG	2 cut(s)	416, 505
BtsIMutI	CAGTG	3 cut(s)	96, 346, 811
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	355, 879
CseI	GACGC	1 cut(s)	895
Csp6I	GTAC	4 cut(s)	19, 464, 709, 815
CviAII	CATG	2 cut(s)	440, 495
CviQI	GTAC	4 cut(s)	19, 464, 709, 815
DdeI	CTNAG	1 cut(s)	642
DpnI	GATC	6 cut(s)	35, 73, 324, 435, 489, 795
DpnII	GATC	6 cut(s)	33, 71, 322, 433, 487, 793
DriI	GACNNNNNGTC	1 cut(s)	618
EaeI	YGGCCR	2 cut(s)	3, 24
EagI	CGGCCG	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	879
Eco52I	CGGCCG	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	5, 910
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	2 cut(s)	443, 498
FatI	CATG	2 cut(s)	439, 494
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	3 cut(s)	126, 287, 890
FokI	GGATG	2 cut(s)	403, 512
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	126, 287, 890
FspBI	CTAG	5 cut(s)	381, 687, 797, 837, 966
GluI	GCNGC	3 cut(s)	126, 287, 890
HaeIII	GGCC	4 cut(s)	5, 26, 356, 628
HapII	CCGG	2 cut(s)	549, 924
HgaI	GACGC	1 cut(s)	895
Hin1II	CATG	2 cut(s)	443, 498
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	77, 529
HpaII	CCGG	2 cut(s)	549, 924
HphI	GGTGA	3 cut(s)	139, 203, 730
Hpy166II	GTNNAC	5 cut(s)	21, 118, 389, 676, 873
Hpy188I	TCNGA	6 cut(s)	76, 194, 241, 528, 773, 826
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	5 cut(s)	21, 118, 389, 676, 873
Hpy99I	CGWCG	1 cut(s)	669
HpyAV	CCTTC	3 cut(s)	224, 320, 925
HpyCH4III	ACNGT	4 cut(s)	100, 569, 602, 680
HpyCH4IV	ACGT	5 cut(s)	163, 265, 667, 778, 945
HpyCH4V	TGCA	6 cut(s)	125, 289, 416, 494, 782, 920
HpyF3I	CTNAG	1 cut(s)	642
HpySE526I	ACGT	5 cut(s)	163, 265, 667, 778, 945
Hsp92II	CATG	2 cut(s)	443, 498
Kzo9I	GATC	6 cut(s)	33, 71, 322, 433, 487, 793
LmnI	GCTCC	2 cut(s)	242, 809
Lsp1109I	GCAGC	3 cut(s)	137, 273, 876
LweI	GCATC	3 cut(s)	112, 425, 464
MaeI	CTAG	5 cut(s)	381, 687, 797, 837, 966
MaeII	ACGT	5 cut(s)	163, 265, 667, 778, 945
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	6 cut(s)	35, 73, 324, 435, 489, 795
MboI	GATC	6 cut(s)	33, 71, 322, 433, 487, 793
MhlI	GDGCHC	3 cut(s)	98, 246, 954
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	52, 87, 129, 140, 198, 553, 647, 765
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	2 cut(s)	217, 444
MnlI	CCTC	9 cut(s)	22, 151, 155, 160, 219, 286, 369, 637, 767
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	12, 171, 183, 372, 444, 536
MslI	CAYNNNNRTG	2 cut(s)	444, 716
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	2 cut(s)	549, 924
MspR9I	CCNGG	3 cut(s)	7, 549, 912
Mva1269I	GAATGC	2 cut(s)	327, 543
MvaI	CCWGG	2 cut(s)	7, 912
MvnI	CGCG	2 cut(s)	282, 846
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	6 cut(s)	33, 71, 322, 433, 487, 793
NlaIII	CATG	2 cut(s)	443, 498
NlaIV	GGNNCC	2 cut(s)	842, 951
NmeAIII	GCCGAG	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	418
PctI	GAATGC	2 cut(s)	327, 543
PfeI	GAWTC	1 cut(s)	529
PflMI	CCANNNNNTGG	1 cut(s)	604
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	127, 288, 891
Ple19I	CGATCG	2 cut(s)	325, 436
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	5, 910
PspGI	CCWGG	2 cut(s)	5, 910
PspN4I	GGNNCC	2 cut(s)	842, 951
PspPI	GGNCC	2 cut(s)	355, 879
PstNI	CAGNNNCTG	1 cut(s)	80
PvuI	CGATCG	2 cut(s)	325, 436
RsaI	GTAC	4 cut(s)	20, 465, 710, 816
RsaNI	GTAC	4 cut(s)	19, 464, 709, 815
RseI	CAYNNNNRTG	2 cut(s)	444, 716
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	6 cut(s)	12, 171, 183, 372, 444, 536
SatI	GCNGC	3 cut(s)	126, 287, 890
Sau3AI	GATC	6 cut(s)	33, 71, 322, 433, 487, 793
Sau96I	GGNCC	2 cut(s)	355, 879
ScaI	AGTACT	1 cut(s)	816
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	7, 549, 912
SduI	GDGCHC	3 cut(s)	98, 246, 954
SfaNI	GCATC	3 cut(s)	112, 425, 464
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	879
SmiMI	CAYNNNNRTG	2 cut(s)	444, 716
SmlI	CTYRAG	2 cut(s)	11, 245
SmoI	CTYRAG	2 cut(s)	11, 245
Sse9I	AATT	8 cut(s)	52, 87, 129, 140, 198, 553, 647, 765
SsiI	CCGC	2 cut(s)	64, 844
SspMI	CTAG	5 cut(s)	381, 687, 797, 837, 966
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	5, 547, 910
TaaI	ACNGT	4 cut(s)	100, 569, 602, 680
TaiI	ACGT	5 cut(s)	166, 268, 670, 781, 948
TaqI	TCGA	1 cut(s)	432
TasI	AATT	8 cut(s)	52, 87, 129, 140, 198, 553, 647, 765
TatI	WGTACW	4 cut(s)	18, 463, 708, 814
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	6 cut(s)	12, 171, 183, 372, 444, 536
Tru9I	TTAA	6 cut(s)	12, 171, 183, 372, 444, 536
TscAI	CASTG	3 cut(s)	103, 346, 811
TseI	GCWGC	3 cut(s)	125, 286, 889
TspDTI	ATGAA	5 cut(s)	276, 302, 668, 752, 777
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	3 cut(s)	103, 346, 811
Van91I	CCANNNNNTGG	1 cut(s)	604
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	879
XapI	RAATTY	2 cut(s)	87, 140
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	5 cut(s)	381, 687, 797, 837, 966
ZrmI	AGTACT	1 cut(s)	816
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.