Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

22974235 .. 22976066

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG226800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTACGTACATCTGCAGGTTAAGTCCCTCGGACTAACTAGACACCGTAACCTTCTTTCAATGTTGGGCTTCTGCTCAGAGCTCAAGTGCTTTGTCTATGAACATGTAGAGTATAGTCGCGTGCTGCACGAGGTCGTCAAGCAAAACCTTCATTGGCACGATCGCATTCGTATTGCCAGTCAAATTTGCTCGGCCTTGTCCTACATTATTAACAGGGCTAGGTGTGAACATAATATTGTTCCTGACAATCTCAGTGCATCCAACATTCTTATCGATCACTACCTTAATGCCAAAATCAATGTTGTGCTAAAAATATGCGACAAGCCGGATTTTGCATGGGATGTAAAGACTTTTGGCTATCTGGTGCTGAATCTCTTAACTGGCATTCCCGGAAATTGTTTTTCTTACTGTTATGTTAGATGGTTTGTTGGTTTGCCCAACGGTTTGGACAAGACGGCAGGTCAATGGCCTATCGATTCGGCCGAGAAATTGATGAATGTGTGCCGACGCTGTGTAGACTGTAATCCTAGAGATGATTTTAGGAAAAAGTACATTATGGTGATAATAGTGAAAGAGATGAAAGATGTTAGGGAAAAGGCTGATGAAATTGTCAGAGGACGTGCAGGAACAAATGATCTAGTTACCAGTGGTAGAGATCTGGACTCTGATATTCCAACACAATTCTACTGCCCCATATATAAGGAAGTAATGAAGGATCCACATGTGGCTGCTGATGGATTTTCCTATGAGCGAGAAGGCATAGAGAAATGGCTCCAAACCGGGCACGACACATCACCAATGACCAATTTGAAGCTCAAGAATAAAATTCTTACCCCTAATGGTACCCTTAAGCTTCTGATCAAAGATTGGTATCGTGAAAGATCAATTCCTTATCCAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

301

Amino Acids

34.84

Weight (kDa)

8.66

Isoelectric Point (pI)

22.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	8 - 107	2.9e-07	Protein tyrosine and serine/threonine kinase
U-box	PF04564	224 - 295	6e-18	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	7, 449
Acc65I	GGTACC	1 cut(s)	842
AccB1I	GGYRCC	1 cut(s)	842
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	1 cut(s)	120
AclWI	GGATC	2 cut(s)	710, 723
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	2 cut(s)	183, 825
AfaI	GTAC	4 cut(s)	5, 9, 551, 844
AflII	CTTAAG	1 cut(s)	848
AflIII	ACRYGT	2 cut(s)	103, 721
AgsI	TTSAA	2 cut(s)	60, 811
AhdI	GACNNNNNGTC	1 cut(s)	459
AjiI	CACGTC	1 cut(s)	620
AluBI	AGCT	3 cut(s)	82, 814, 853
AluI	AGCT	3 cut(s)	82, 814, 853
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	710, 723
AoxI	GGCC	3 cut(s)	192, 467, 480
ApeKI	GCWGC	2 cut(s)	124, 728
ApoI	RAATTY	2 cut(s)	183, 825
Asp718I	GGTACC	1 cut(s)	842
AsuC2I	CCSGG	2 cut(s)	390, 781
AsuHPI	GGTGA	2 cut(s)	571, 786
BaeGI	GKGCMC	1 cut(s)	786
BamHI	GGATCC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	842
BanII	GRGCYC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	111, 715
BccI	CCATC	2 cut(s)	414, 728
BceAI	ACGGC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	858
BcnI	CCSGG	2 cut(s)	390, 781
BfaI	CTAG	4 cut(s)	39, 219, 528, 638
BfmI	CTRYAG	1 cut(s)	14
BfrI	CTTAAG	1 cut(s)	848
BfuAI	ACCTGC	2 cut(s)	7, 449
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	2 cut(s)	125, 729
BlsI	GCNGC	2 cut(s)	126, 730
Bme1390I	CCNGG	2 cut(s)	390, 781
BmeRI	GACNNNNNGTC	1 cut(s)	459
BmgBI	CACGTC	1 cut(s)	620
BmiI	GGNNCC	3 cut(s)	717, 773, 844
BmrFI	CCNGG	2 cut(s)	390, 781
BmsI	GCATC	1 cut(s)	266
BpuEI	CTTGAG	2 cut(s)	68, 800
BpuMI	CCSGG	2 cut(s)	390, 781
Bsa29I	ATCGAT	2 cut(s)	273, 474
BsaAI	YACGTR	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	870
BsaJI	CCNNGG	1 cut(s)	28
Bse1I	ACTGG	3 cut(s)	177, 385, 645
Bse8I	GATNNNNATC	1 cut(s)	870
BseCI	ATCGAT	2 cut(s)	273, 474
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	257, 346
BseJI	GATNNNNATC	1 cut(s)	870
BseMII	CTCAG	2 cut(s)	90, 265
BseNI	ACTGG	3 cut(s)	177, 385, 645
BseSI	GKGCMC	1 cut(s)	786
BseX3I	CGGCCG	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	111, 715
BsgI	GTGCAG	2 cut(s)	110, 642
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	2 cut(s)	163, 483
BshFI	GGCC	3 cut(s)	194, 469, 482
BshNI	GGYRCC	1 cut(s)	842
BshVI	ATCGAT	2 cut(s)	273, 474
BsiEI	CGRYCG	2 cut(s)	163, 483
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	326, 390, 780
BslFI	GGGAC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	10
BsmI	GAATGC	2 cut(s)	165, 384
BsnI	GGCC	3 cut(s)	194, 469, 482
Bsp1286I	GDGCHC	2 cut(s)	84, 786
Bsp143I	GATC	7 cut(s)	160, 274, 634, 655, 715, 858, 881
BspANI	GGCC	3 cut(s)	194, 469, 482
BspCNI	CTCAG	2 cut(s)	89, 264
BspDI	ATCGAT	2 cut(s)	273, 474
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	717, 773, 844
BspMAI	CTGCAG	1 cut(s)	18
BspMI	ACCTGC	2 cut(s)	7, 449
BspPI	GGATC	2 cut(s)	710, 723
BspT107I	GGYRCC	1 cut(s)	842
BspTI	CTTAAG	1 cut(s)	848
BsrI	ACTGG	3 cut(s)	177, 385, 645
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	7 cut(s)	160, 274, 634, 655, 715, 858, 881
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst4CI	ACNGT	4 cut(s)	47, 410, 443, 521
BstAFI	CTTAAG	1 cut(s)	848
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	76, 251
BstF5I	GGATG	2 cut(s)	257, 346
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	7 cut(s)	163, 277, 637, 658, 718, 861, 884
BstMBI	GATC	7 cut(s)	160, 274, 634, 655, 715, 858, 881
BstMCI	CGRYCG	2 cut(s)	163, 483
BstNSI	RCATGY	2 cut(s)	107, 725
BstSCI	CCNGG	2 cut(s)	388, 779
BstSFI	CTRYAG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	786
BstSNI	TACGTA	1 cut(s)	7
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	111, 715
BstX2I	RGATCY	2 cut(s)	655, 715
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	2 cut(s)	655, 715
BstZI	CGGCCG	1 cut(s)	480
Bsu15I	ATCGAT	2 cut(s)	273, 474
BsuRI	GGCC	3 cut(s)	194, 469, 482
BsuTUI	ATCGAT	2 cut(s)	273, 474
BtrI	CACGTC	1 cut(s)	620
BtsCI	GGATG	2 cut(s)	257, 346
BtsIMutI	CAGTG	2 cut(s)	259, 652
BveI	ACCTGC	2 cut(s)	7, 449
Cac8I	GCNNGC	1 cut(s)	122
ClaI	ATCGAT	2 cut(s)	273, 474
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	4 cut(s)	4, 8, 550, 843
CviAII	CATG	3 cut(s)	104, 336, 722
CviQI	GTAC	4 cut(s)	4, 8, 550, 843
DdeI	CTNAG	2 cut(s)	76, 251
DpnI	GATC	7 cut(s)	162, 276, 636, 657, 717, 860, 883
DpnII	GATC	7 cut(s)	160, 274, 634, 655, 715, 858, 881
DriI	GACNNNNNGTC	1 cut(s)	459
EaeI	YGGCCR	1 cut(s)	480
EagI	CGGCCG	1 cut(s)	480
Eam1105I	GACNNNNNGTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	480
Eco105I	TACGTA	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	84
Eco52I	CGGCCG	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	84
FaeI	CATG	3 cut(s)	107, 339, 725
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	3 cut(s)	103, 335, 721
FbaI	TGATCA	1 cut(s)	858
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	125, 729
FokI	GGATG	2 cut(s)	244, 353
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	125, 729
FspBI	CTAG	4 cut(s)	39, 219, 528, 638
GluI	GCNGC	2 cut(s)	125, 729
HaeIII	GGCC	3 cut(s)	194, 469, 482
HapII	CCGG	3 cut(s)	326, 390, 780
HgaI	GACGC	1 cut(s)	516
Hin1II	CATG	3 cut(s)	107, 339, 725
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	3 cut(s)	370, 476, 662
HpaII	CCGG	3 cut(s)	326, 390, 780
HphI	GGTGA	2 cut(s)	571, 786
Hpy166II	GTNNAC	2 cut(s)	227, 517
Hpy188I	TCNGA	5 cut(s)	32, 79, 614, 667, 858
Hpy188III	TCNNGA	4 cut(s)	242, 659, 817, 875
Hpy8I	GTNNAC	2 cut(s)	227, 517
Hpy99I	CGWCG	1 cut(s)	510
HpyAV	CCTTC	4 cut(s)	62, 158, 706, 749
HpyCH4III	ACNGT	4 cut(s)	47, 410, 443, 521
HpyCH4IV	ACGT	2 cut(s)	6, 619
HpyCH4V	TGCA	5 cut(s)	16, 127, 257, 335, 623
HpyF3I	CTNAG	2 cut(s)	76, 251
HpySE526I	ACGT	2 cut(s)	6, 619
Hsp92II	CATG	3 cut(s)	107, 339, 725
KpnI	GGTACC	1 cut(s)	846
Ksp22I	TGATCA	1 cut(s)	858
Kzo9I	GATC	7 cut(s)	160, 274, 634, 655, 715, 858, 881
LmnI	GCTCC	1 cut(s)	777
Lsp1109I	GCAGC	2 cut(s)	111, 715
LweI	GCATC	1 cut(s)	266
MaeI	CTAG	4 cut(s)	39, 219, 528, 638
MaeII	ACGT	2 cut(s)	6, 619
MaeIII	GTNAC	2 cut(s)	47, 640
MalI	GATC	7 cut(s)	162, 276, 636, 657, 717, 860, 883
MboI	GATC	7 cut(s)	160, 274, 634, 655, 715, 858, 881
MflI	RGATCY	2 cut(s)	655, 715
MhlI	GDGCHC	2 cut(s)	84, 786
MluCI	AATT	8 cut(s)	183, 394, 488, 606, 680, 805, 825, 885
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	2 cut(s)	285, 698
MnlI	CCTC	3 cut(s)	38, 124, 608
MseI	TTAA	5 cut(s)	21, 210, 285, 377, 849
MslI	CAYNNNNRTG	1 cut(s)	557
MspCI	CTTAAG	1 cut(s)	848
MspI	CCGG	3 cut(s)	326, 390, 780
MspR9I	CCNGG	2 cut(s)	390, 781
Mva1269I	GAATGC	2 cut(s)	165, 384
MvnI	CGCG	1 cut(s)	120
NciI	CCSGG	2 cut(s)	390, 781
NdeII	GATC	7 cut(s)	160, 274, 634, 655, 715, 858, 881
NlaIII	CATG	3 cut(s)	107, 339, 725
NlaIV	GGNNCC	3 cut(s)	717, 773, 844
NmeAIII	GCCGAG	2 cut(s)	170, 508
NspI	RCATGY	2 cut(s)	107, 725
PciI	ACATGT	2 cut(s)	103, 721
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PctI	GAATGC	2 cut(s)	165, 384
PfeI	GAWTC	2 cut(s)	370, 476
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	126, 730
Ple19I	CGATCG	1 cut(s)	163
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
Ppu21I	YACGTR	1 cut(s)	7
PscI	ACATGT	2 cut(s)	103, 721
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	3 cut(s)	717, 773, 844
PstI	CTGCAG	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	655, 715
PvuI	CGATCG	1 cut(s)	163
RsaI	GTAC	4 cut(s)	5, 9, 551, 844
RsaNI	GTAC	4 cut(s)	4, 8, 550, 843
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	5 cut(s)	21, 210, 285, 377, 849
SatI	GCNGC	2 cut(s)	125, 729
Sau3AI	GATC	7 cut(s)	160, 274, 634, 655, 715, 858, 881
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	2 cut(s)	390, 781
SduI	GDGCHC	2 cut(s)	84, 786
SfaNI	GCATC	1 cut(s)	266
SfcI	CTRYAG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	3 cut(s)	83, 815, 848
SmoI	CTYRAG	3 cut(s)	83, 815, 848
SnaBI	TACGTA	1 cut(s)	7
Sse9I	AATT	8 cut(s)	183, 394, 488, 606, 680, 805, 825, 885
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	4 cut(s)	39, 219, 528, 638
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	388, 779
TaaI	ACNGT	4 cut(s)	47, 410, 443, 521
TaiI	ACGT	2 cut(s)	9, 622
TaqI	TCGA	2 cut(s)	273, 474
TasI	AATT	8 cut(s)	183, 394, 488, 606, 680, 805, 825, 885
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	370, 476
Tru1I	TTAA	5 cut(s)	21, 210, 285, 377, 849
Tru9I	TTAA	5 cut(s)	21, 210, 285, 377, 849
TscAI	CASTG	2 cut(s)	259, 652
TseI	GCWGC	2 cut(s)	124, 728
TspDTI	ATGAA	6 cut(s)	114, 140, 509, 593, 618, 725
TspRI	CASTG	2 cut(s)	259, 652
Vha464I	CTTAAG	1 cut(s)	848
XapI	RAATTY	2 cut(s)	183, 825
XceI	RCATGY	2 cut(s)	107, 725
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	4 cut(s)	39, 219, 528, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.