Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

22934352 .. 22968328

Gene Structure 33977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG231100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCCAGGCTTAAGGAGTACACGGCCGAGGAGATCGTATTGGCTACTGATAATTTTTCTTGGCGGTTGAGATCAGAGTCTGTAGGAATTTGGGGCACTGTTTATAAAGGCTATGTTGACGATGCAGCAATTTCCATCAAATTCCTCACCTCCCCCGAGGAACGTGTTTTTAACTATATGGTTAAGTCCCTCGGACTAACTAGACACCGTAACCTTCTTTCAATGTTGGGCTTCTGCTCAGAGCTCAAGTGCTTTGTCTATGAACATGTAGAGTATAGTCGCGTGCTGCACGAGGTCGTCAAGCAAAACCTTCATTGGCACGATCGCATTCGTATTGCCAGTCAAATTTGCTCGGCCTTGTCCTACATTATTAACAGGGCTAGGTGTGAACATAATATTGTTCCTGACTATCTCAGTGCATCCAACATTCTTATCGATCACTACCTTAATGCCAAAATCAATGTTGTGCTAAAAATATGCGACAAGCCGGATTTTGCATGGGATGTAAAGACTTTTGGCTATCTGGTGCTGAATCTCTTAACTGGCATTCCCGGAAATTGTTTTTCTTACTGTTATGTTAGATGGTTTGTTGGTTTGCCTCACGGTTTGGACAAGACGGCAGGTCAATGGCCTATGGATTCGGCTGAGAAATTGATGAATGTGTGCCGACGCTGTGTAGACTGTAATCCTAGAGATGATTTTAGGAAAAAGTACATTATGGTGATAATAGTGAAAGAGATGAAAGATGTTAGGGAAAAGGCTGATGAAATTGTCAGAGGACGTGCAGGAACAAATGATCTAGTTACCAGTGGTAGAGATCAGGACTCTGATATTCCAACACAATTCTACTGCCCCATATATAAGGAAGTAATGAAGGATCCACATGTGGCTGCTGATGGATTTTCCTATGAGCGAGAAGGCATAGAGAAATGGCTCCAAACCGGGCACGACACATCACCAATGACCAATTTGAAGCTCAAGAATAAAATTCTTACCCCTAATGGTACCCTGAAGCTTCTGATCAAAGACTGGTATCGTGAAAGATCAATTCCTTATCCAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

355

Amino Acids

41.13

Weight (kDa)

8.37

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	29 - 161	2.4e-09	Protein tyrosine and serine/threonine kinase
U-box	PF04564	278 - 349	8e-18	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	611
Acc65I	GGTACC	1 cut(s)	1004
AccB1I	GGYRCC	1 cut(s)	1004
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	1 cut(s)	282
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	872, 885
AcoI	YGGCCR	2 cut(s)	3, 24
AcsI	RAATTY	4 cut(s)	87, 140, 345, 987
AcuI	CTGAAG	1 cut(s)	1031
AfaI	GTAC	3 cut(s)	20, 713, 1006
AflII	CTTAAG	1 cut(s)	11
AflIII	ACRYGT	3 cut(s)	163, 265, 883
AgsI	TTSAA	2 cut(s)	222, 973
AhdI	GACNNNNNGTC	1 cut(s)	621
AjiI	CACGTC	1 cut(s)	782
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	3 cut(s)	244, 976, 1015
AluI	AGCT	3 cut(s)	244, 976, 1015
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	872, 885
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	3, 24, 354, 629
ApeKI	GCWGC	3 cut(s)	125, 286, 890
ApoI	RAATTY	4 cut(s)	87, 140, 345, 987
Asp718I	GGTACC	1 cut(s)	1004
AsuC2I	CCSGG	2 cut(s)	552, 943
AsuHPI	GGTGA	3 cut(s)	139, 733, 948
AvaI	CYCGRG	1 cut(s)	155
BaeGI	GKGCMC	2 cut(s)	98, 948
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	877
BanI	GGYRCC	1 cut(s)	1004
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	137, 273, 877
BccI	CCATC	3 cut(s)	143, 576, 890
BceAI	ACGGC	2 cut(s)	39, 633
BciT130I	CCWGG	1 cut(s)	7
BclI	TGATCA	1 cut(s)	1020
BcnI	CCSGG	2 cut(s)	552, 943
BfaI	CTAG	4 cut(s)	201, 381, 690, 800
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	3 cut(s)	126, 287, 891
BlsI	GCNGC	3 cut(s)	127, 288, 892
Bme1390I	CCNGG	3 cut(s)	7, 552, 943
BmeRI	GACNNNNNGTC	1 cut(s)	621
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	782
BmiI	GGNNCC	3 cut(s)	879, 935, 1006
BmrFI	CCNGG	3 cut(s)	7, 552, 943
BmsI	GCATC	2 cut(s)	112, 428
BpuEI	CTTGAG	2 cut(s)	230, 962
BpuMI	CCSGG	2 cut(s)	552, 943
Bsa29I	ATCGAT	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	27, 156, 190
Bse1I	ACTGG	4 cut(s)	339, 547, 807, 1034
BseBI	CCWGG	1 cut(s)	7
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	27, 156, 190
BseGI	GGATG	2 cut(s)	419, 508
BseMII	CTCAG	3 cut(s)	252, 427, 636
BseNI	ACTGG	4 cut(s)	339, 547, 807, 1034
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	2 cut(s)	98, 948
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	137, 273, 877
BsgI	GTGCAG	2 cut(s)	272, 804
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	2 cut(s)	27, 325
BshFI	GGCC	4 cut(s)	5, 26, 356, 631
BshNI	GGYRCC	1 cut(s)	1004
BshVI	ATCGAT	1 cut(s)	435
BsiEI	CGRYCG	2 cut(s)	27, 325
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	488, 552, 942
BslFI	GGGAC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	2 cut(s)	327, 546
BsnI	GGCC	4 cut(s)	5, 26, 356, 631
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	98, 246, 948
Bsp143I	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	4 cut(s)	5, 26, 356, 631
BspCNI	CTCAG	3 cut(s)	251, 426, 637
BspDI	ATCGAT	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	879, 935, 1006
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	872, 885
BspT107I	GGYRCC	1 cut(s)	1004
BspTI	CTTAAG	1 cut(s)	11
BsrI	ACTGG	4 cut(s)	339, 547, 807, 1034
BssECI	CCNNGG	3 cut(s)	27, 156, 190
BssMI	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	5 cut(s)	100, 209, 572, 605, 683
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	3 cut(s)	238, 413, 645
BstF5I	GGATG	2 cut(s)	419, 508
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	9 cut(s)	36, 74, 325, 439, 799, 820, 880, 1023, 1046
BstMBI	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
BstMCI	CGRYCG	2 cut(s)	27, 325
BstNI	CCWGG	1 cut(s)	7
BstNSI	RCATGY	2 cut(s)	269, 887
BstSCI	CCNGG	3 cut(s)	5, 550, 941
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	2 cut(s)	98, 948
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	137, 273, 877
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
BstZI	CGGCCG	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	4 cut(s)	5, 26, 356, 631
BsuTUI	ATCGAT	1 cut(s)	435
BtrI	CACGTC	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	419, 508
BtsIMutI	CAGTG	3 cut(s)	96, 421, 814
BveI	ACCTGC	1 cut(s)	611
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	3 cut(s)	19, 712, 1005
CviAII	CATG	3 cut(s)	266, 498, 884
CviQI	GTAC	3 cut(s)	19, 712, 1005
DdeI	CTNAG	3 cut(s)	238, 413, 645
DpnI	GATC	9 cut(s)	35, 73, 324, 438, 798, 819, 879, 1022, 1045
DpnII	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
DriI	GACNNNNNGTC	1 cut(s)	621
EaeI	YGGCCR	2 cut(s)	3, 24
EagI	CGGCCG	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	621
Ecl136II	GAGCTC	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	1031
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	3 cut(s)	269, 501, 887
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	3 cut(s)	265, 497, 883
FbaI	TGATCA	1 cut(s)	1020
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	3 cut(s)	126, 287, 891
FokI	GGATG	2 cut(s)	406, 515
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	126, 287, 891
FspBI	CTAG	4 cut(s)	201, 381, 690, 800
GluI	GCNGC	3 cut(s)	126, 287, 891
HaeIII	GGCC	4 cut(s)	5, 26, 356, 631
HapII	CCGG	3 cut(s)	488, 552, 942
HgaI	GACGC	1 cut(s)	678
Hin1II	CATG	3 cut(s)	269, 501, 887
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	1013
HinfI	GANTC	4 cut(s)	77, 532, 638, 824
HpaII	CCGG	3 cut(s)	488, 552, 942
HphI	GGTGA	3 cut(s)	139, 733, 948
Hpy166II	GTNNAC	4 cut(s)	21, 118, 389, 679
Hpy188I	TCNGA	6 cut(s)	76, 194, 241, 776, 829, 1020
Hpy188III	TCNNGA	4 cut(s)	404, 821, 979, 1037
Hpy8I	GTNNAC	4 cut(s)	21, 118, 389, 679
Hpy99I	CGWCG	1 cut(s)	672
HpyAV	CCTTC	4 cut(s)	224, 320, 868, 911
HpyCH4III	ACNGT	5 cut(s)	100, 209, 572, 605, 683
HpyCH4IV	ACGT	2 cut(s)	163, 781
HpyCH4V	TGCA	5 cut(s)	125, 289, 419, 497, 785
HpyF3I	CTNAG	3 cut(s)	238, 413, 645
HpySE526I	ACGT	2 cut(s)	163, 781
Hsp92II	CATG	3 cut(s)	269, 501, 887
KpnI	GGTACC	1 cut(s)	1008
Ksp22I	TGATCA	1 cut(s)	1020
Kzo9I	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
LmnI	GCTCC	1 cut(s)	939
Lsp1109I	GCAGC	3 cut(s)	137, 273, 877
LweI	GCATC	2 cut(s)	112, 428
MaeI	CTAG	4 cut(s)	201, 381, 690, 800
MaeII	ACGT	2 cut(s)	163, 781
MaeIII	GTNAC	2 cut(s)	209, 802
MalI	GATC	9 cut(s)	35, 73, 324, 438, 798, 819, 879, 1022, 1045
MboI	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	3 cut(s)	98, 246, 948
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	86, 818
MmeI	TCCRAC	2 cut(s)	447, 860
MnlI	CCTC	8 cut(s)	22, 151, 155, 160, 200, 286, 609, 770
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	12, 171, 183, 372, 447, 539
MslI	CAYNNNNRTG	1 cut(s)	719
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	3 cut(s)	488, 552, 942
MspR9I	CCNGG	3 cut(s)	7, 552, 943
Mva1269I	GAATGC	2 cut(s)	327, 546
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	282
NciI	CCSGG	2 cut(s)	552, 943
NdeII	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
NlaIII	CATG	3 cut(s)	269, 501, 887
NlaIV	GGNNCC	3 cut(s)	879, 935, 1006
NmeAIII	GCCGAG	2 cut(s)	52, 332
NspI	RCATGY	2 cut(s)	269, 887
PciI	ACATGT	2 cut(s)	265, 883
PctI	GAATGC	2 cut(s)	327, 546
PfeI	GAWTC	2 cut(s)	532, 638
PfoI	TCCNGGA	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	127, 288, 892
Ple19I	CGATCG	1 cut(s)	325
PleI	GAGTC	2 cut(s)	85, 818
PpsI	GAGTC	2 cut(s)	85, 818
PscI	ACATGT	2 cut(s)	265, 883
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	879, 935, 1006
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	877
PvuI	CGATCG	1 cut(s)	325
RsaI	GTAC	3 cut(s)	20, 713, 1006
RsaNI	GTAC	3 cut(s)	19, 712, 1005
RseI	CAYNNNNRTG	1 cut(s)	719
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	6 cut(s)	12, 171, 183, 372, 447, 539
SatI	GCNGC	3 cut(s)	126, 287, 891
Sau3AI	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
SchI	GAGTC	2 cut(s)	86, 818
ScrFI	CCNGG	3 cut(s)	7, 552, 943
SduI	GDGCHC	3 cut(s)	98, 246, 948
SfaNI	GCATC	2 cut(s)	112, 428
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	3 cut(s)	11, 245, 977
SmoI	CTYRAG	3 cut(s)	11, 245, 977
SsiI	CCGC	1 cut(s)	64
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	4 cut(s)	201, 381, 690, 800
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	5, 550, 941
TaaI	ACNGT	5 cut(s)	100, 209, 572, 605, 683
TaiI	ACGT	2 cut(s)	166, 784
TaqI	TCGA	1 cut(s)	435
TatI	WGTACW	2 cut(s)	18, 711
TfiI	GAWTC	2 cut(s)	532, 638
Tru1I	TTAA	6 cut(s)	12, 171, 183, 372, 447, 539
Tru9I	TTAA	6 cut(s)	12, 171, 183, 372, 447, 539
TscAI	CASTG	3 cut(s)	103, 421, 814
TseI	GCWGC	3 cut(s)	125, 286, 890
TspDTI	ATGAA	6 cut(s)	276, 302, 671, 755, 780, 887
TspRI	CASTG	3 cut(s)	103, 421, 814
Vha464I	CTTAAG	1 cut(s)	11
XapI	RAATTY	4 cut(s)	87, 140, 345, 987
XceI	RCATGY	2 cut(s)	269, 887
XmiI	GTMKAC	1 cut(s)	678
XspI	CTAG	4 cut(s)	201, 381, 690, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.