FvH4_1g19560

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003787
Physical Location & Seq
Forward (+)
11815278 .. 11816488
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19560.t1

Sequence Viewer

Length: 924 bp
ATGGCAATAAGGCTAACTGAAGTGGGGGGCAGGATTAAGGAGTACACAGCCGAGGAGATCGTATTGGCTACTGATAATTTTTCTTGGCAATTGAGATTAGAGTCTATAGGGATTTGGGGCAATGTTTATAAAGGCTATATGGACAACAATGCAGTTTCAATCAAATTCCTCTTCACCTCCCCCCAAGAACATCTTTTTGAATCTAGGCTTAAGTCCCTCAGACTAATTGGTCACCCTCACCTTATTACAATGCTGGGTTTCTGCTCCGAGCTCAAGTGCTTTGTCTATGAACACATAGAGTATAGTCGCTCGCTACACGAGGTCATCAAGCAAAAGCTTGAATGGCACGATCGCATTCGTGTTGCAAGAGACATTTGCTCGGCCTTGTGCCACATTAAGAGGGCTAGGTTCGAACCTAACCAACATATTGTTCCTGACTATCTCAGTGCATCCAACATTCTCATCGATCGCAACCTTAGAGCCAAAGTCGATATTGTGCTGAAAAGAAGGGATGACAAGCAGGATTTTGTGTGGGATGTCAATACTTTTGGCTATCTGCTTCTGAATCTTTTAACTGGGATTCCAGGAAATTTTATTTCTTACTCTTATGTTAGGTGTGTTGGTTTGCTCAACGCTTTGGACAAGACGGCAGGGCAATGGCCGATGGACTTGGCTGAGAAATTGATGAATGTGTGCCGCCGTTGTGTAGACTGTAATCCCAGAGATGAACTTAGGAAAAAGTACATTATGGTGATAATAGTGAAAGAGGTGAACGAAATTATAGAAAAGGTGTCAAGAATAGAGGTATGGTATAATTCCCAGATGTATTCTTCTCCAAACTGGAGGATATTTATACTAGTACAGATTAACCTATACCTAAGTATGAAAGGAGAATACAATAGTAGAGCTATGTATGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr U-box

Protein Analysis

308

Amino Acids

36.14

Weight (kDa)

8.8

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 37 - 167 1.3e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AasI GACNNNNNNGTC 1 cut(s) 228
AccI GTMKAC 1 cut(s) 708
AciI CCGC 1 cut(s) 697
AcoI YGGCCR 1 cut(s) 659
AcsI RAATTY 2 cut(s) 164, 589
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 3 cut(s) 44, 743, 861
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 3 cut(s) 159, 200, 341
AhlI ACTAGT 1 cut(s) 856
AjnI CCWGG 1 cut(s) 583
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AluBI AGCT 3 cut(s) 271, 337, 908
AluI AGCT 3 cut(s) 271, 337, 908
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 363
AoxI GGCC 2 cut(s) 381, 659
ApoI RAATTY 2 cut(s) 164, 589
AsuHPI GGTGA 5 cut(s) 166, 224, 230, 763, 781
AsuII TTCGAA 1 cut(s) 411
BanII GRGCYC 1 cut(s) 273
BauI CACGAG 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 1 cut(s) 658
BceAI ACGGC 2 cut(s) 663, 684
BciT130I CCWGG 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 363
BcuI ACTAGT 1 cut(s) 856
BfaI CTAG 3 cut(s) 204, 405, 857
BfmI CTRYAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 697
BlsI GCNGC 1 cut(s) 698
Bme1390I CCNGG 1 cut(s) 585
BmrFI CCNGG 1 cut(s) 585
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 862
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 580, 845
Bse3DI GCAATG 2 cut(s) 127, 662
BseBI CCWGG 1 cut(s) 585
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 449, 517, 541
BseMI GCAATG 2 cut(s) 127, 662
BseMII CTCAG 3 cut(s) 232, 457, 666
BseNI ACTGG 2 cut(s) 580, 845
BseRI GAGGAG 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 253
Bsh1285I CGRYCG 2 cut(s) 352, 469
BshFI GGCC 2 cut(s) 383, 661
BshVI ATCGAT 1 cut(s) 465
BsiEI CGRYCG 2 cut(s) 352, 469
BsiHKAI GWGCWC 1 cut(s) 273
BslFI GGGAC 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 2 cut(s) 383, 661
Bsp119I TTCGAA 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 57, 349, 466
BspACI CCGC 1 cut(s) 697
BspANI GGCC 2 cut(s) 383, 661
BspCNI CTCAG 3 cut(s) 231, 456, 667
BspDI ATCGAT 1 cut(s) 465
BspT104I TTCGAA 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 2 cut(s) 127, 662
BsrI ACTGG 2 cut(s) 580, 845
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 57, 349, 466
BssSI CACGAG 1 cut(s) 317
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 1 cut(s) 713
Bst6I CTCTTC 1 cut(s) 176
BstAFI CTTAAG 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 6 cut(s) 218, 443, 476, 675, 731, 878
BstEII GGTNACC 1 cut(s) 230
BstF5I GGATG 3 cut(s) 449, 517, 541
BstKTI GATC 3 cut(s) 60, 352, 469
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 3 cut(s) 57, 349, 466
BstMCI CGRYCG 2 cut(s) 352, 469
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNI CCWGG 1 cut(s) 585
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 583
BstSFI CTRYAG 1 cut(s) 105
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 2 cut(s) 383, 661
BsuTUI ATCGAT 1 cut(s) 465
BtsCI GGATG 3 cut(s) 449, 517, 541
BtsIMutI CAGTG 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 311
ClaI ATCGAT 1 cut(s) 465
Csp6I GTAC 3 cut(s) 43, 742, 860
CviQI GTAC 3 cut(s) 43, 742, 860
DdeI CTNAG 6 cut(s) 218, 443, 476, 675, 731, 878
DpnI GATC 3 cut(s) 59, 351, 468
DpnII GATC 3 cut(s) 57, 349, 466
DrdI GACNNNNNNGTC 1 cut(s) 228
DseDI GACNNNNNNGTC 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 659
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 271
EcoO65I GGTNACC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 273
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 199
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 1 cut(s) 697
FokI GGATG 3 cut(s) 436, 524, 548
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 697
FspBI CTAG 3 cut(s) 204, 405, 857
GluI GCNGC 1 cut(s) 697
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 862
HaeIII GGCC 2 cut(s) 383, 661
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 4 cut(s) 101, 200, 565, 580
HphI GGTGA 5 cut(s) 166, 224, 230, 763, 781
Hpy166II GTNNAC 3 cut(s) 45, 709, 772
Hpy188I TCNGA 3 cut(s) 221, 268, 564
Hpy188III TCNNGA 2 cut(s) 434, 795
Hpy8I GTNNAC 3 cut(s) 45, 709, 772
HpyAV CCTTC 1 cut(s) 501
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4V TGCA 3 cut(s) 152, 365, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 6 cut(s) 218, 443, 476, 675, 731, 878
Kzo9I GATC 3 cut(s) 57, 349, 466
LmnI GCTCC 1 cut(s) 269
LweI GCATC 1 cut(s) 458
MaeI CTAG 3 cut(s) 204, 405, 857
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 59, 351, 468
MboI GATC 3 cut(s) 57, 349, 466
MboII GAAGA 2 cut(s) 163, 822
MfeI CAATTG 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 8 cut(s) 76, 89, 164, 225, 589, 680, 777, 814
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 477
MseI TTAA 5 cut(s) 36, 210, 396, 572, 867
MslI CAYNNNNRTG 1 cut(s) 749
MspCI CTTAAG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 585
MunI CAATTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 354
MvaI CCWGG 1 cut(s) 585
MwoI GCNNNNNNNGC 1 cut(s) 343
NdeII GATC 3 cut(s) 57, 349, 466
NmeAIII GCCGAG 2 cut(s) 76, 359
NmuCI GTSAC 1 cut(s) 230
NspV TTCGAA 1 cut(s) 411
PctI GAATGC 1 cut(s) 354
PfeI GAWTC 3 cut(s) 200, 565, 580
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 1 cut(s) 698
Ple19I CGATCG 2 cut(s) 352, 469
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PsiI TTATAA 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 583
PspEI GGTNACC 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 1 cut(s) 583
PvuI CGATCG 2 cut(s) 352, 469
RsaI GTAC 3 cut(s) 44, 743, 861
RsaNI GTAC 3 cut(s) 43, 742, 860
RseI CAYNNNNRTG 1 cut(s) 749
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 5 cut(s) 36, 210, 396, 572, 867
SatI GCNGC 1 cut(s) 697
Sau3AI GATC 3 cut(s) 57, 349, 466
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 1 cut(s) 458
SfcI CTRYAG 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 2 cut(s) 209, 272
SmoI CTYRAG 2 cut(s) 209, 272
SpeI ACTAGT 1 cut(s) 856
Sse9I AATT 8 cut(s) 76, 89, 164, 225, 589, 680, 777, 814
SsiI CCGC 1 cut(s) 697
SspMI CTAG 3 cut(s) 204, 405, 857
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 583
TaaI ACNGT 1 cut(s) 713
TaqI TCGA 3 cut(s) 411, 465, 489
TasI AATT 8 cut(s) 76, 89, 164, 225, 589, 680, 777, 814
TatI WGTACW 3 cut(s) 42, 741, 859
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 3 cut(s) 200, 565, 580
Tru1I TTAA 5 cut(s) 36, 210, 396, 572, 867
Tru9I TTAA 5 cut(s) 36, 210, 396, 572, 867
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 4 cut(s) 303, 701, 741, 899
TspRI CASTG 1 cut(s) 451
Vha464I CTTAAG 1 cut(s) 209
XapI RAATTY 2 cut(s) 164, 589
XmiI GTMKAC 1 cut(s) 708
XspI CTAG 3 cut(s) 204, 405, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.