Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Forward (+)

1051312 .. 1056827

Gene Structure 5516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2307 bp

ATGGGTGACAGCGAGGCCATGGTTTCCGAGGGTTATACTTCTGCTCCATATGGAGACTATAATGCTTCTGCTGCTACTGTGGAATCGACCGGGCAAGAGACTGCACCAATTGTTGATGCATCACACTCGGTCAACAATGATTCTTTGGTCAATGGTACTGCGCCAGTTGAGAACGGAAGTGCAACAGATAATGTGGCTGTGACTGCTCCAGCAGCGGAGCATGGAGACAATACTGGCTCTACACTCTCAACGGAAGAGGAGCGCTTGTGGAATATTGTAAGGGCAAATTCTTTAGAGTTTAATGCTTGGACTGCCTTGATTGATGAGACGGAGAGGATAGCGCAGGACAATATAGCAAAAATCCGGAAGGTCTATGATGCTTTCTTAGCTGAATTTCCTCTGTGTTATGGCTATTGGAAAAAGTTTGCCGATCATGAGGCTCGGGTGGGGGCAATGGACAAAGTCGTGGAGGTTTATGAAAGAGCAGTGCTGGGAGTGACATATTCAGTGGATATCTGGTTGCATTATTGCACTTTTGCCATCAATACATATGGAGATCCAGAAACGATCAGAAGGCTTTTTGAACGAGCTTTGGTTTACGTTGGAACTGATTTTCTTTCCTCTCCGTTGTGGGACAAATACATTGAGTATGAGTACATGCAGCAGGACTGGAGCCGAGTTGCCTTGATTTACACCAGAATATTGGAGAATCCAATTCAAAATCTGGATAGATATTTCAGCAGTTTTAAGGAGCTAGCTGAAACACGGCCTCTGTCGGAACTAAGGAGTGCTGAGGAATCCGCAGCTGCTGCTGTTGCTGTTGCTGGTGATGCTTCTGAAAGTGCAGCATCTGAGTCCGGTGAAAAGGCAGATGAAGGACGATCTCAAGTTGATGGTTCCACCGAACAATCCCCTAAATTGGAAAGTGCTAGTTCAACTGAACCTGAGGAGTTGAAGAAGTATGTAGGCATCAGGGAAGCCATGTACATAAAATCGAAAGAGTTTGAATCTAAAATCATTGGTTATGAAATGGCTATAAGGAGGCCCTATTTCCATGTGCGTCCTCTGAATGTCGCAGAACTGGAGAATTGGCACAACTATCTGGATTTCATTGAGAGGGATGGAGACTTCAATAAGGTGGTCAAGCTGTATGAAAGATGTGTGGTTACCTGTGCAAATTACCCAGAATACTGGATTCGTTATGTGACAAACATGGAAGCAAGTGGAAGTGCGGACCTTGCAGAAAATGCCCTTGCTCGAGCAACTCAAGTCTTTGTCAAGAAACAACCAGAGATTCACCTATTTGCTGCTCGATTAAAAGAGCAGAATGGAGATATAGCTGGTGCTAGAGCTGCATACCAATTAGTGCACTCTGAAATTTCTCCTGGACTTCTTGAAGCAGTAATCAAGCATGCAAATATGGAATACCGACTAGGTAATCTGGATGATGCTTTCTCTTTGTATGAGCAAGTGATTGCTGTTGAAAAGGGGAAAGAACATTCCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTGGTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACTTGACCATGTACAACCGTCAAAACCTCTCATGGAAGCACTGATTCATTTTGAGGCGATTCAGCCACCACCAAGAGAGATTGATTACCTTGAGCCACTTGTAGAGAAAGTTATAAAGCCAGATGCAGATGCCCAAAACATTGCAAGTTCCACTGAGAGGGAAGAGCTATCCTTAATATATATAGAGTTCCTGGGTATTTTTGGAGATGTGAAGTCCATTAAAAAAGCGGAAGATCAACATGTTAAACTGTTTTATCCTCATCGGAGCACGTCGGAGCTGAAAAAGCGTAGCGCAGATGATTTTCTCGCATCAGATAGGACGAAAATGGCAAAAACTTACAACGGCACTCCACCTGCTCAGCCAGTATCCAATGCATATCCAAATGCTCAGGCTCAATGGTCTGGTGGTTATGCTGCGCAGCCTCAGACTTGGCCACCAGCACAAGCTGCTCCTGCTCAACCACAGCAATGGAACCCTGCCTACGGTCAACAGGCTGCTTATGGTGCATATGGGGGATATCCTGCTGGCTATACCGCTCCACAAGCACCAACACCTGTGCCACAGGCCGCAGCTTATGGAGCGTATCCTGCTCAGACATACCCAACGCAGAGTTATGCACCTCCAGTTGCAGCAGCAGCACCAGCGGCTGCACCGGTGCAGCAACCGGCTGCTGCTGTTGCTCCTCAAGCGTACTACAACACGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

768

Amino Acids

85.24

Weight (kDa)

4.9

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	87 - 251	5.9e-62	PRP39 N-terminal HAT repeat
Suf	PF05843	87 - 251	2.8e-16	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N	PF23233	94 - 236	8e-09	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	139 - 200	3.1e-06	PRP39 C-terminal HAT repeat
HAT_PRP39_C	PF23241	338 - 381	1.9e-12	PRP39 C-terminal HAT repeat
HAT_PRP39_C	PF23241	422 - 532	3.1e-26	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1709
AarI	CACCTGC	1 cut(s)	1957
Acc16I	TGCGCA	2 cut(s)	1527, 2013
Acc36I	ACCTGC	1 cut(s)	1957
AccBSI	CCGCTC	1 cut(s)	2132
AccIII	TCCGGA	1 cut(s)	363
AciI	CCGC	7 cut(s)	215, 801, 1232, 1823, 2130, 2163, 2240
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	2027
AcsI	RAATTY	3 cut(s)	286, 392, 1377
AfaI	GTAC	6 cut(s)	157, 656, 986, 1608, 2288, 2300
AfeI	AGCGCT	1 cut(s)	263
AfiI	CCNNNNNNNGG	3 cut(s)	919, 1752, 2078
AflIII	ACRYGT	2 cut(s)	1834, 2295
AgeI	ACCGGT	1 cut(s)	2248
AgsI	TTSAA	9 cut(s)	584, 719, 936, 955, 1007, 1132, 1397, 1484, 1536
AjiI	CACGTC	1 cut(s)	1866
AjnI	CCWGG	3 cut(s)	1384, 1556, 1785
Alw21I	GWGCWC	2 cut(s)	1371, 1865
Alw26I	GTCTC	6 cut(s)	48, 92, 219, 320, 1119, 1558
Alw44I	GTGCAC	1 cut(s)	1367
AlwI	GGATC	1 cut(s)	551
AlwNI	CAGNNNCTG	3 cut(s)	809, 851, 2243
Ama87I	CYCGRG	2 cut(s)	441, 1257
Aor13HI	TCCGGA	1 cut(s)	363
Aor51HI	AGCGCT	1 cut(s)	263
AoxI	GGCC	5 cut(s)	15, 767, 1043, 2027, 2160
ApaLI	GTGCAC	1 cut(s)	1367
ApoI	RAATTY	3 cut(s)	286, 392, 1377
AsiGI	ACCGGT	1 cut(s)	2248
AspLEI	GCGC	6 cut(s)	163, 264, 343, 1528, 1889, 2014
AspS9I	GGNCC	2 cut(s)	1044, 1234
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	4 cut(s)	17, 839, 872, 1289
AsuNHI	GCTAGC	1 cut(s)	754
AvaI	CYCGRG	2 cut(s)	441, 1257
AvaII	GGWCC	1 cut(s)	1234
AxyI	CCTNAGG	1 cut(s)	945
BaeGI	GKGCMC	1 cut(s)	1371
BalI	TGGCCA	1 cut(s)	2029
Bbv12I	GWGCWC	2 cut(s)	1371, 1865
BbvCI	CCTCAGC	1 cut(s)	792
BccI	CCATC	3 cut(s)	548, 887, 1115
BceAI	ACGGC	2 cut(s)	782, 1954
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	3 cut(s)	1386, 1558, 1787
BciVI	GTATCC	2 cut(s)	1972, 2190
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	6 cut(s)	48, 92, 219, 320, 1119, 1558
BfaI	CTAG	5 cut(s)	755, 930, 1347, 1433, 1575
BfoI	RGCGCY	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	1957
BfuI	GTATCC	2 cut(s)	1972, 2190
BlpI	GCTNAGC	1 cut(s)	1953
Bme1390I	CCNGG	4 cut(s)	91, 1386, 1558, 1787
Bme18I	GGWCC	1 cut(s)	1234
BmeT110I	CYCGRG	2 cut(s)	441, 1257
BmgBI	CACGTC	1 cut(s)	1866
BmgT120I	GGNCC	2 cut(s)	1044, 1234
BmiI	GGNNCC	3 cut(s)	674, 898, 2069
BmrFI	CCNGG	4 cut(s)	91, 1386, 1558, 1787
BmtI	GCTAGC	1 cut(s)	758
BpmI	CTGGAG	5 cut(s)	192, 691, 1103, 1540, 2202
Bpu10I	CCTNAGC	2 cut(s)	792, 1983
Bpu1102I	GCTNAGC	1 cut(s)	1953
BpuEI	CTTGAG	4 cut(s)	870, 1251, 1706, 2265
BpuMI	CCSGG	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	2298
BsaI	GGTCTC	1 cut(s)	1558
BsaJI	CCNNGG	4 cut(s)	18, 27, 1557, 1786
BsaWI	WCCGGW	3 cut(s)	363, 857, 2248
BsaXI	ACNNNNNCTCC	6 cut(s)	28, 58, 251, 281, 1538, 1568
Bsc4I	CCNNNNNNNGG	3 cut(s)	919, 1752, 2078
Bse118I	RCCGGY	2 cut(s)	2248, 2260
Bse1I	ACTGG	7 cut(s)	164, 238, 674, 1086, 1196, 1958, 2219
Bse21I	CCTNAGG	1 cut(s)	945
Bse3DI	GCAATG	3 cut(s)	459, 1734, 2069
BseAI	TCCGGA	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	1386, 1558, 1787
BseDI	CCNNGG	4 cut(s)	18, 27, 1557, 1786
BseGI	GGATG	3 cut(s)	1126, 1450, 1567
BseLI	CCNNNNNNNGG	3 cut(s)	919, 1752, 2078
BseMI	GCAATG	3 cut(s)	459, 1734, 2069
BseMII	CTCAG	9 cut(s)	783, 843, 936, 1557, 1740, 1967, 1997, 2033, 2201
BseNI	ACTGG	7 cut(s)	164, 238, 674, 1086, 1196, 1958, 2219
BseRI	GAGGAG	3 cut(s)	272, 962, 2268
BseSI	GKGCMC	1 cut(s)	1371
BseYI	CCCAGC	1 cut(s)	490
BsgI	GTGCAG	4 cut(s)	87, 864, 2229, 2273
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	5 cut(s)	17, 769, 1045, 2029, 2162
BshTI	ACCGGT	1 cut(s)	2248
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	1371, 1865
BsiHKCI	CYCGRG	2 cut(s)	441, 1257
BsiSI	CCGG	5 cut(s)	90, 364, 858, 2249, 2261
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	3 cut(s)	919, 1752, 2078
BsmAI	GTCTC	6 cut(s)	48, 92, 219, 320, 1119, 1558
BsmBI	CGTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	5 cut(s)	17, 769, 1045, 2029, 2162
Bso31I	GGTCTC	1 cut(s)	1558
BsoBI	CYCGRG	2 cut(s)	441, 1257
Bsp1286I	GDGCHC	2 cut(s)	1371, 1865
Bsp13I	TCCGGA	1 cut(s)	363
Bsp1407I	TGTACA	2 cut(s)	984, 1606
Bsp143I	GATC	5 cut(s)	430, 556, 567, 881, 1828
Bsp1720I	GCTNAGC	1 cut(s)	1953
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	7 cut(s)	215, 801, 1232, 1823, 2130, 2163, 2240
BspANI	GGCC	5 cut(s)	17, 769, 1045, 2029, 2162
BspCNI	CTCAG	9 cut(s)	784, 844, 937, 1558, 1741, 1966, 1996, 2032, 2200
BspEI	TCCGGA	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	674, 898, 2069
BspMI	ACCTGC	1 cut(s)	1957
BspOI	GCTAGC	1 cut(s)	758
BspPI	GGATC	1 cut(s)	551
BspQI	GCTCTTC	1 cut(s)	1752
BspTNI	GGTCTC	1 cut(s)	1558
BsrBI	CCGCTC	1 cut(s)	2132
BsrDI	GCAATG	3 cut(s)	459, 1734, 2069
BsrFI	RCCGGY	2 cut(s)	2248, 2260
BsrGI	TGTACA	2 cut(s)	984, 1606
BsrI	ACTGG	7 cut(s)	164, 238, 674, 1086, 1196, 1958, 2219
BssAI	RCCGGY	2 cut(s)	2248, 2260
BssECI	CCNNGG	4 cut(s)	18, 27, 1557, 1786
BssMI	GATC	5 cut(s)	430, 556, 567, 881, 1828
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	3 cut(s)	1386, 1558, 1787
Bst4CI	ACNGT	4 cut(s)	79, 1614, 1845, 2081
Bst6I	CTCTTC	2 cut(s)	249, 1752
BstAPI	GCANNNNNTGC	3 cut(s)	809, 1247, 2042
BstAUI	TGTACA	2 cut(s)	984, 1606
BstBAI	YACGTR	1 cut(s)	2298
BstC8I	GCNNGC	3 cut(s)	756, 1413, 2122
BstDSI	CCRYGG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	1165
BstF5I	GGATG	3 cut(s)	1126, 1450, 1567
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	6 cut(s)	163, 264, 343, 1528, 1889, 2014
BstKTI	GATC	5 cut(s)	433, 559, 570, 884, 1831
BstMAI	GTCTC	6 cut(s)	48, 92, 219, 320, 1119, 1558
BstMBI	GATC	5 cut(s)	430, 556, 567, 881, 1828
BstMCI	CGRYCG	1 cut(s)	90
BstNI	CCWGG	3 cut(s)	1386, 1558, 1787
BstNSI	RCATGY	3 cut(s)	661, 1415, 1838
BstPI	GGTNACC	1 cut(s)	1165
BstSCI	CCNGG	4 cut(s)	89, 1384, 1556, 1785
BstSLI	GKGCMC	1 cut(s)	1371
BstX2I	RGATCY	1 cut(s)	556
BstXI	CCANNNNNNTGG	3 cut(s)	703, 1191, 2064
BstYI	RGATCY	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	945
BsuI	GTATCC	2 cut(s)	1972, 2190
BsuRI	GGCC	5 cut(s)	17, 769, 1045, 2029, 2162
BtgI	CCRYGG	1 cut(s)	18
BtrI	CACGTC	1 cut(s)	1866
BtsCI	GGATG	3 cut(s)	1126, 1450, 1567
BtsI	GCAGTG	2 cut(s)	492, 1514
BtsIMutI	CAGTG	5 cut(s)	492, 513, 1514, 1634, 1746
BveI	ACCTGC	1 cut(s)	1957
Cac8I	GCNNGC	3 cut(s)	756, 1413, 2122
CaiI	CAGNNNCTG	3 cut(s)	809, 851, 2243
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	6 cut(s)	163, 264, 343, 1528, 1889, 2014
Cfr10I	RCCGGY	2 cut(s)	2248, 2260
Cfr13I	GGNCC	2 cut(s)	1044, 1234
CseI	GACGC	1 cut(s)	1049
Csp6I	GTAC	6 cut(s)	156, 655, 985, 1607, 2287, 2299
CspAI	ACCGGT	1 cut(s)	2248
CviQI	GTAC	6 cut(s)	156, 655, 985, 1607, 2287, 2299
DpnI	GATC	5 cut(s)	432, 558, 569, 883, 1830
DpnII	GATC	5 cut(s)	430, 556, 567, 881, 1828
EaeI	YGGCCR	1 cut(s)	2027
Eam1104I	CTCTTC	2 cut(s)	249, 1752
EarI	CTCTTC	2 cut(s)	249, 1752
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	1558
Eco32I	GATATC	2 cut(s)	514, 2114
Eco47I	GGWCC	1 cut(s)	1234
Eco47III	AGCGCT	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	945
Eco88I	CYCGRG	2 cut(s)	441, 1257
Eco91I	GGTNACC	1 cut(s)	1165
EcoO109I	RGGNCCY	1 cut(s)	1044
EcoO65I	GGTNACC	1 cut(s)	1165
EcoRII	CCWGG	3 cut(s)	1384, 1556, 1785
EcoRV	GATATC	2 cut(s)	514, 2114
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	2 cut(s)	121, 1972
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	320
FaqI	GGGAC	1 cut(s)	647
FauNDI	CATATG	3 cut(s)	49, 550, 2104
FokI	GGATG	3 cut(s)	1133, 1457, 1574
FspBI	CTAG	5 cut(s)	755, 930, 1347, 1433, 1575
FspI	TGCGCA	2 cut(s)	1527, 2013
GlaI	GCGC	6 cut(s)	162, 263, 342, 1527, 1888, 2013
GsaI	CCCAGC	1 cut(s)	494
GsuI	CTGGAG	5 cut(s)	192, 691, 1103, 1540, 2202
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	5 cut(s)	17, 769, 1045, 2029, 2162
HapII	CCGG	5 cut(s)	90, 364, 858, 2249, 2261
HgaI	GACGC	1 cut(s)	1049
HhaI	GCGC	6 cut(s)	163, 264, 343, 1528, 1889, 2014
Hin6I	GCGC	6 cut(s)	161, 262, 341, 1526, 1887, 2012
HinP1I	GCGC	6 cut(s)	161, 262, 341, 1526, 1887, 2012
HincII	GTYRAC	2 cut(s)	133, 2084
HindII	GTYRAC	2 cut(s)	133, 2084
HpaII	CCGG	5 cut(s)	90, 364, 858, 2249, 2261
HphI	GGTGA	4 cut(s)	17, 839, 872, 1289
Hpy166II	GTNNAC	4 cut(s)	133, 598, 1369, 2084
Hpy188III	TCNNGA	8 cut(s)	364, 434, 560, 725, 1103, 1279, 1394, 1442
Hpy8I	GTNNAC	4 cut(s)	133, 598, 1369, 2084
Hpy99I	CGWCG	1 cut(s)	1870
HpyAV	CCTTC	3 cut(s)	361, 567, 869
HpyCH4III	ACNGT	4 cut(s)	79, 1614, 1845, 2081
HpyCH4IV	ACGT	3 cut(s)	600, 1865, 2297
HpySE526I	ACGT	3 cut(s)	600, 1865, 2297
HspAI	GCGC	6 cut(s)	161, 262, 341, 1526, 1887, 2012
Kpn2I	TCCGGA	1 cut(s)	363
Kzo9I	GATC	5 cut(s)	430, 556, 567, 881, 1828
LguI	GCTCTTC	1 cut(s)	1752
MaeI	CTAG	5 cut(s)	755, 930, 1347, 1433, 1575
MaeII	ACGT	3 cut(s)	600, 1865, 2297
MaeIII	GTNAC	5 cut(s)	5, 199, 496, 1165, 1204
MalI	GATC	5 cut(s)	432, 558, 569, 883, 1830
MbiI	CCGCTC	1 cut(s)	2132
MboI	GATC	5 cut(s)	430, 556, 567, 881, 1828
MboII	GAAGA	4 cut(s)	266, 967, 1769, 1838
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	2 cut(s)	1371, 1865
MlsI	TGGCCA	1 cut(s)	2029
MluCI	AATT	9 cut(s)	108, 286, 392, 714, 917, 1087, 1177, 1361, 1377
MluNI	TGGCCA	1 cut(s)	2029
MlyI	GAGTC	1 cut(s)	863
MmeI	TCCRAC	3 cut(s)	583, 756, 1848
Mox20I	TGGCCA	1 cut(s)	2029
Mph1103I	ATGCAT	2 cut(s)	121, 1972
MroI	TCCGGA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	2029
MseI	TTAA	6 cut(s)	300, 747, 1316, 1769, 1815, 1839
MslI	CAYNNNNRTG	1 cut(s)	2062
Msp20I	TGGCCA	1 cut(s)	2029
MspA1I	CMGCKG	3 cut(s)	215, 806, 2240
MspI	CCGG	5 cut(s)	90, 364, 858, 2249, 2261
MspR9I	CCNGG	4 cut(s)	91, 1386, 1558, 1787
MunI	CAATTG	1 cut(s)	108
MvaI	CCWGG	3 cut(s)	1386, 1558, 1787
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	18
NdeI	CATATG	3 cut(s)	49, 550, 2104
NdeII	GATC	5 cut(s)	430, 556, 567, 881, 1828
NheI	GCTAGC	1 cut(s)	754
NlaIV	GGNNCC	3 cut(s)	674, 898, 2069
NmeAIII	GCCGAG	1 cut(s)	701
NmuCI	GTSAC	4 cut(s)	5, 199, 496, 1204
NsbI	TGCGCA	2 cut(s)	1527, 2013
NsiI	ATGCAT	2 cut(s)	121, 1972
NspI	RCATGY	3 cut(s)	661, 1415, 1838
PaeI	GCATGC	1 cut(s)	1415
PaeR7I	CTCGAG	1 cut(s)	1257
PagI	TCATGA	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	1957
PciI	ACATGT	1 cut(s)	1834
PciSI	GCTCTTC	1 cut(s)	1752
PfeI	GAWTC	9 cut(s)	83, 140, 709, 797, 1007, 1195, 1294, 1639, 1654
PflFI	GACNNNGTC	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	1384
PinAI	ACCGGT	1 cut(s)	2248
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
Ppu21I	YACGTR	1 cut(s)	2298
PscI	ACATGT	1 cut(s)	1834
PsiI	TTATAA	1 cut(s)	1709
Psp6I	CCWGG	3 cut(s)	1384, 1556, 1785
PspEI	GGTNACC	1 cut(s)	1165
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	3 cut(s)	1384, 1556, 1785
PspN4I	GGNNCC	3 cut(s)	674, 898, 2069
PspPI	GGNCC	2 cut(s)	1044, 1234
PspXI	VCTCGAGB	1 cut(s)	1257
PsrI	GAACNNNNNNTAC	2 cut(s)	2060, 2092
PstNI	CAGNNNCTG	3 cut(s)	809, 851, 2243
PsuI	RGATCY	1 cut(s)	556
PsyI	GACNNNGTC	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	806
RsaI	GTAC	6 cut(s)	157, 656, 986, 1608, 2288, 2300
RsaNI	GTAC	6 cut(s)	156, 655, 985, 1607, 2287, 2299
RseI	CAYNNNNRTG	1 cut(s)	2062
SapI	GCTCTTC	1 cut(s)	1752
SaqAI	TTAA	6 cut(s)	300, 747, 1316, 1769, 1815, 1839
Sau3AI	GATC	5 cut(s)	430, 556, 567, 881, 1828
Sau96I	GGNCC	2 cut(s)	1044, 1234
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	4 cut(s)	91, 1386, 1558, 1787
SduI	GDGCHC	2 cut(s)	1371, 1865
Sfr274I	CTCGAG	1 cut(s)	1257
SgrAI	CRCCGGYG	1 cut(s)	2248
SinI	GGWCC	1 cut(s)	1234
SlaI	CTCGAG	1 cut(s)	1257
SmiMI	CAYNNNNRTG	1 cut(s)	2062
SmlI	CTYRAG	5 cut(s)	885, 1257, 1266, 1685, 2280
SmoI	CTYRAG	5 cut(s)	885, 1257, 1266, 1685, 2280
SphI	GCATGC	1 cut(s)	1415
Sse9I	AATT	9 cut(s)	108, 286, 392, 714, 917, 1087, 1177, 1361, 1377
SsiI	CCGC	7 cut(s)	215, 801, 1232, 1823, 2130, 2163, 2240
SspI	AATATT	2 cut(s)	274, 702
SspMI	CTAG	5 cut(s)	755, 930, 1347, 1433, 1575
StyD4I	CCNGG	4 cut(s)	89, 1384, 1556, 1785
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	4 cut(s)	79, 1614, 1845, 2081
TaiI	ACGT	3 cut(s)	603, 1868, 2300
TaqI	TCGA	5 cut(s)	86, 995, 1258, 1312, 1590
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	9 cut(s)	108, 286, 392, 714, 917, 1087, 1177, 1361, 1377
TatI	WGTACW	3 cut(s)	654, 984, 1606
TauI	GCSGC	2 cut(s)	2165, 2243
TfiI	GAWTC	9 cut(s)	83, 140, 709, 797, 1007, 1195, 1294, 1639, 1654
Tru1I	TTAA	6 cut(s)	300, 747, 1316, 1769, 1815, 1839
Tru9I	TTAA	6 cut(s)	300, 747, 1316, 1769, 1815, 1839
TscAI	CASTG	5 cut(s)	492, 513, 1521, 1641, 1753
TseFI	GTSAC	4 cut(s)	5, 199, 496, 1204
Tsp45I	GTSAC	4 cut(s)	5, 199, 496, 1204
TspDTI	ATGAA	7 cut(s)	492, 888, 1041, 1099, 1167, 1533, 1631
TspGWI	ACGGA	4 cut(s)	189, 266, 344, 615
TspRI	CASTG	5 cut(s)	492, 513, 1521, 1641, 1753
Tth111I	GACNNNGTC	1 cut(s)	461
VneI	GTGCAC	1 cut(s)	1367
VpaK11BI	GGWCC	1 cut(s)	1234
XapI	RAATTY	3 cut(s)	286, 392, 1377
XceI	RCATGY	3 cut(s)	661, 1415, 1838
XhoI	CTCGAG	1 cut(s)	1257
XspI	CTAG	5 cut(s)	755, 930, 1347, 1433, 1575
Zsp2I	ATGCAT	2 cut(s)	121, 1972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.