Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Forward (+)

36518481 .. 36530328

Gene Structure 11848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG306300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTTTTGTGGTACTTCAGTTACTGGAAAAGAGTTTCCTTTGTGTTATGGGTATTGGAAAAAGTATGCAGATCATGAGGCACGTTTTGGTGTTATTGATAAAGTTGTGGAGGTTTATGAACGAGCAGTTCAAGCTGTTACGTATTCAGTTGACATTTGGTTGCATTACTGCACATTTGCCACAACTACTTTTGGAGATCCAGACACTATCAGAAGGCTTTTTGAGCAAGGATTGGCGTATGTTGGAACAGATTACTTGTCCTTTCCTCTTTGGGACAGGTACATTGATTATGAATTTATGCAGCAAGCATGGGGCCAGCTTGTTGTGATCTACTCACGAATATTAGAGAATCCGTACCAACAACTGGATCGATATTTAAACAGTTTTAAGGAGTTAGCTGGAAGTCGGCCTCTCTCAGAATTGAGAACTGCTGAAGAAACTGCTGCTGCTGCTGCAGCAGCAAGTGCCACTTCAGAGGATGGTGTACAAGCAAACGGGGTCAGTTTGAAATCGGAAATTGAAGCAGAAAATATATCTACAGAACTATTTCATTTAGTGAAGTTCACAATGAAATCGTTGAGCTCAAGTGTGATATCAGCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.69

Weight (kDa)

4.83

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	10 - 131	1.4e-44	PRP39 N-terminal HAT repeat
Suf	PF05843	10 - 127	4.2e-06	Suppressor of forked protein (Suf)
HAT_PRP39_C	PF23241	19 - 79	2.4e-06	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AclWI	GGATC	2 cut(s)	191, 375
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	2 cut(s)	453, 456
AfaI	GTAC	4 cut(s)	13, 281, 356, 486
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	131, 508, 521
AluBI	AGCT	5 cut(s)	134, 319, 398, 582, 599
AluI	AGCT	5 cut(s)	134, 319, 398, 582, 599
Alw21I	GWGCWC	1 cut(s)	584
AlwI	GGATC	2 cut(s)	191, 375
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	313, 407
ApeKI	GCWGC	7 cut(s)	301, 443, 446, 449, 452, 455, 458
ApoI	RAATTY	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	313
BaeI	ACNNNNGTAYC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	7 cut(s)	313, 430, 433, 436, 439, 467, 470
BccI	CCATC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	604
BfmI	CTRYAG	2 cut(s)	453, 537
BisI	GCNGC	7 cut(s)	302, 444, 447, 450, 453, 456, 459
BlsI	GCNGC	7 cut(s)	303, 445, 448, 451, 454, 457, 460
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	568
Bsa29I	ATCGAT	1 cut(s)	370
BsaAI	YACGTR	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	28, 369
BseCI	ATCGAT	1 cut(s)	370
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	28, 369
BseXI	GCAGC	7 cut(s)	313, 430, 433, 436, 439, 467, 470
BsgI	GTGCAG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	315, 409
BshVI	ATCGAT	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	584
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	315, 409
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	70, 196, 327, 367
BspANI	GGCC	2 cut(s)	315, 409
BspCNI	CTCAG	1 cut(s)	428
BspDI	ATCGAT	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	2 cut(s)	191, 375
BsrGI	TGTACA	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	28, 369
BssMI	GATC	4 cut(s)	70, 196, 327, 367
Bst4CI	ACNGT	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	306, 317
BstDEI	CTNAG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	4 cut(s)	73, 199, 330, 370
BstMBI	GATC	4 cut(s)	70, 196, 327, 367
BstMWI	GCNNNNNNNGC	7 cut(s)	131, 223, 449, 452, 455, 458, 464
BstSFI	CTRYAG	2 cut(s)	453, 537
BstSNI	TACGTA	1 cut(s)	141
BstV1I	GCAGC	7 cut(s)	313, 430, 433, 436, 439, 467, 470
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	315, 409
BsuTUI	ATCGAT	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	306, 317
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	370
Csp6I	GTAC	4 cut(s)	12, 280, 355, 485
CviAII	CATG	2 cut(s)	74, 309
CviJI	RGCY	8 cut(s)	134, 217, 315, 319, 398, 409, 582, 599
CviKI_1	RGCY	8 cut(s)	134, 217, 315, 319, 398, 409, 582, 599
CviQI	GTAC	4 cut(s)	12, 280, 355, 485
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	4 cut(s)	72, 198, 329, 369
DpnII	GATC	4 cut(s)	70, 196, 327, 367
DraI	TTTAAA	1 cut(s)	378
Ecl136II	GAGCTC	1 cut(s)	582
Eco105I	TACGTA	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	584
Eco32I	GATATC	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	582
Eco57I	CTGAAG	2 cut(s)	453, 456
EcoICRI	GAGCTC	1 cut(s)	582
EcoRV	GATATC	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	584
FaeI	CATG	2 cut(s)	77, 312
FaiI	YATR	9 cut(s)	48, 66, 75, 117, 240, 291, 299, 310, 533
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	2 cut(s)	73, 308
Fnu4HI	GCNGC	7 cut(s)	302, 444, 447, 450, 453, 456, 459
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	7 cut(s)	302, 444, 447, 450, 453, 456, 459
FspBI	CTAG	1 cut(s)	604
GluI	GCNGC	7 cut(s)	302, 444, 447, 450, 453, 456, 459
HaeIII	GGCC	2 cut(s)	315, 409
Hin1II	CATG	2 cut(s)	77, 312
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	151, 485, 564
Hpy188I	TCNGA	4 cut(s)	212, 418, 475, 514
Hpy188III	TCNNGA	3 cut(s)	74, 200, 336
Hpy8I	GTNNAC	3 cut(s)	151, 485, 564
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	2 cut(s)	82, 140
HpyCH4V	TGCA	5 cut(s)	68, 163, 171, 301, 455
HpyF10VI	GCNNNNNNNGC	7 cut(s)	131, 223, 449, 452, 455, 458, 464
HpyF3I	CTNAG	1 cut(s)	415
HpySE526I	ACGT	2 cut(s)	82, 140
Hsp92II	CATG	2 cut(s)	77, 312
Kzo9I	GATC	4 cut(s)	70, 196, 327, 367
LpnPI	CCDG	6 cut(s)	9, 213, 262, 329, 350, 384
Lsp1109I	GCAGC	7 cut(s)	313, 430, 433, 436, 439, 467, 470
MaeI	CTAG	1 cut(s)	604
MaeII	ACGT	2 cut(s)	82, 140
MaeIII	GTNAC	2 cut(s)	19, 136
MalI	GATC	4 cut(s)	72, 198, 329, 369
MboI	GATC	4 cut(s)	70, 196, 327, 367
MboII	GAAGA	1 cut(s)	446
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	584
MluCI	AATT	3 cut(s)	293, 419, 516
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	70, 103, 276, 420, 469
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	2 cut(s)	377, 387
MwoI	GCNNNNNNNGC	7 cut(s)	131, 223, 449, 452, 455, 458, 464
NdeII	GATC	4 cut(s)	70, 196, 327, 367
NlaIII	CATG	2 cut(s)	77, 312
NlaIV	GGNNCC	1 cut(s)	314
PagI	TCATGA	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	7 cut(s)	303, 445, 448, 451, 454, 457, 460
Ppu21I	YACGTR	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	584
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	4 cut(s)	13, 281, 356, 486
RsaNI	GTAC	4 cut(s)	12, 280, 355, 485
SacI	GAGCTC	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	377, 387
SatI	GCNGC	7 cut(s)	302, 444, 447, 450, 453, 456, 459
Sau3AI	GATC	4 cut(s)	70, 196, 327, 367
Sau96I	GGNCC	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	584
SetI	ASST	9 cut(s)	85, 114, 136, 143, 281, 321, 400, 584, 601
SfcI	CTRYAG	2 cut(s)	453, 537
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
SnaBI	TACGTA	1 cut(s)	141
Sse9I	AATT	3 cut(s)	293, 419, 516
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	1 cut(s)	604
SstI	GAGCTC	1 cut(s)	584
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	2 cut(s)	85, 143
TaqI	TCGA	1 cut(s)	370
TasI	AATT	3 cut(s)	293, 419, 516
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	377, 387
Tru9I	TTAA	2 cut(s)	377, 387
TseI	GCWGC	7 cut(s)	301, 443, 446, 449, 452, 455, 458
TspDTI	ATGAA	4 cut(s)	132, 306, 539, 584
TspGWI	ACGGA	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	364
XapI	RAATTY	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.