Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001468.1

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Forward (+)

106854 .. 108791

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001468.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggactcgaagacggaaaacgttttggagatggagtcatgcctgggtcttcaactaggaggaaactctcaatgtttgaagcttgaaatttgccatattgcttctctttgtgagaaattggctatgtctgccgaagaagatagactatggaacattgtgagggctaattctttagattttaatgcctggactgctttaattgaagagacagagaaggtggcagaggataacatcttaaaaattcaaaaagtttatgatgcttttctagcagagtttcctttgtgttatgggtattggaaaaagtatgcagatcatgaggcacattttggtgttattgataaagttgtggaggtttatgaacgagcagttcaagctgttacctattcagttgacatttggttgcactactgcacaattgccacaactacttttggagatccagacactatcagaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.39

Weight (kDa)

4.71

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	21
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	2 cut(s)	87, 240
AgsI	TTSAA	6 cut(s)	53, 79, 86, 203, 245, 371
AjnI	CCWGG	2 cut(s)	42, 185
AluBI	AGCT	2 cut(s)	82, 374
AluI	AGCT	2 cut(s)	82, 374
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	431
ApoI	RAATTY	2 cut(s)	87, 240
BbsI	GAAGAC	2 cut(s)	17, 41
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	44, 187
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	56, 266
Bme1390I	CCNGG	2 cut(s)	44, 187
BmrFI	CCNGG	2 cut(s)	44, 187
BmsI	GCATC	1 cut(s)	247
BpiI	GAAGAC	2 cut(s)	17, 41
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
BseBI	CCWGG	2 cut(s)	44, 187
BseDI	CCNNGG	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	200
Bsp143I	GATC	2 cut(s)	310, 436
BspHI	TCATGA	1 cut(s)	313
BspPI	GGATC	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	310, 436
Bst2UI	CCWGG	2 cut(s)	44, 187
Bst6I	CTCTTC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	313, 439
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	310, 436
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 191, 266, 371
BstNI	CCWGG	2 cut(s)	44, 187
BstSCI	CCNGG	2 cut(s)	42, 185
BstV2I	GAAGAC	2 cut(s)	17, 41
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
CciI	TCATGA	1 cut(s)	313
CviAII	CATG	2 cut(s)	39, 314
CviJI	RGCY	4 cut(s)	82, 122, 164, 374
CviKI_1	RGCY	4 cut(s)	82, 122, 164, 374
DpnI	GATC	2 cut(s)	312, 438
DpnII	GATC	2 cut(s)	310, 436
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	42, 185
FaeI	CATG	2 cut(s)	42, 317
FaiI	YATR	9 cut(s)	40, 96, 125, 148, 255, 288, 306, 315, 357
FatI	CATG	2 cut(s)	38, 313
FspBI	CTAG	2 cut(s)	56, 266
Hin1II	CATG	2 cut(s)	42, 317
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	5, 35
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	2 cut(s)	314, 440
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	208, 447
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	308, 403, 411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 191, 266, 371
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	42, 317
Kzo9I	GATC	2 cut(s)	310, 436
LpnPI	CCDG	5 cut(s)	29, 56, 172, 199, 453
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	56, 266
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	312, 438
MboI	GATC	2 cut(s)	310, 436
MboII	GAAGA	5 cut(s)	22, 41, 146, 149, 215
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	6 cut(s)	87, 116, 166, 198, 240, 414
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	5 cut(s)	53, 153, 217, 310, 343
MseI	TTAA	3 cut(s)	180, 197, 236
MslI	CAYNNNNRTG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	44, 187
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	2 cut(s)	44, 187
MwoI	GCNNNNNNNGC	4 cut(s)	128, 191, 266, 371
NdeII	GATC	2 cut(s)	310, 436
NlaIII	CATG	2 cut(s)	42, 317
PagI	TCATGA	1 cut(s)	313
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp1406I	AACGTT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	42, 185
PspGI	CCWGG	2 cut(s)	42, 185
PsuI	RGATCY	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	180, 197, 236
Sau3AI	GATC	2 cut(s)	310, 436
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	44, 187
SetI	ASST	7 cut(s)	24, 84, 219, 354, 376, 383, 458
SfaNI	GCATC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	6 cut(s)	87, 116, 166, 198, 240, 414
SspMI	CTAG	2 cut(s)	56, 266
StyD4I	CCNGG	2 cut(s)	42, 185
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	8
TasI	AATT	6 cut(s)	87, 116, 166, 198, 240, 414
Tru1I	TTAA	3 cut(s)	180, 197, 236
Tru9I	TTAA	3 cut(s)	180, 197, 236
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	1 cut(s)	29
XapI	RAATTY	2 cut(s)	87, 240
XspI	CTAG	2 cut(s)	56, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.