Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Reverse (-)

55778428 .. 55782155

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG357900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGACTCGAAGACGGAAAATGTTTTGGAGATGGAGTCATGCCTGGGTCTTCAACTAGGAGGAAACTCTCAATATTTGAAGCTTGAAATTTGCCATATTGCTTCTCTTTGTGAGAAATTGGATCATGAGGCACATTTTGGTGTTATTGATAAAGTTGTGGAGGTTTATGAACGAGCAGTTCAAGCTGTTACCTATTCAGTTGACATTTGGTTGCATTACTGCACATTTGCCACAACTACTTTTGGAGATCCAGACACTATCAGAAGGCTTTTTGAGCAAGGATTGGCGTATGTTGGAACAGATTACTTGTCCTTTCCTCTTTGGGACAGGTACATTGATTATGAATTTATGCAGCAAGCATGGGGCCAGCTTGTCGTGATCTACTCACGAATATTAGAGAATTCGTACCAACAACTGGATCGATATTTAAACAGCATCTATAATACTTGTTACTGTCGGACCCTGATCTTAGTAACTAGTTATGAGACATGTCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

19.38

Weight (kDa)

4.61

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	41 - 145	1.1e-30	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	415
AclWI	GGATC	3 cut(s)	129, 242, 426
AcsI	RAATTY	3 cut(s)	87, 344, 400
AfaI	GTAC	2 cut(s)	332, 407
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	53, 79, 86, 182
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	3 cut(s)	82, 185, 370
AluI	AGCT	3 cut(s)	82, 185, 370
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	3 cut(s)	129, 242, 426
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	3 cut(s)	87, 344, 400
AspS9I	GGNCC	2 cut(s)	364, 459
AvaII	GGWCC	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	17, 41
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	479
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	56, 477
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	2 cut(s)	364, 459
BmiI	GGNNCC	2 cut(s)	365, 461
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	17, 41
Bsa29I	ATCGAT	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	366
BshVI	ATCGAT	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	121, 247, 378, 418, 465
BspANI	GGCC	1 cut(s)	366
BspDI	ATCGAT	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	365, 461
BspPI	GGATC	3 cut(s)	129, 242, 426
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	5 cut(s)	121, 247, 378, 418, 465
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	357, 368
BstDEI	CTNAG	1 cut(s)	469
BstKTI	GATC	5 cut(s)	124, 250, 381, 421, 468
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	5 cut(s)	121, 247, 378, 418, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 274
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	2 cut(s)	17, 41
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	357, 368
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	364, 459
ClaI	ATCGAT	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	331, 406
CviAII	CATG	4 cut(s)	39, 125, 360, 489
CviJI	RGCY	5 cut(s)	82, 185, 268, 366, 370
CviKI_1	RGCY	5 cut(s)	82, 185, 268, 366, 370
CviQI	GTAC	2 cut(s)	331, 406
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	5 cut(s)	123, 249, 380, 420, 467
DpnII	GATC	5 cut(s)	121, 247, 378, 418, 465
DraI	TTTAAA	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	42
FaeI	CATG	4 cut(s)	42, 128, 363, 492
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	4 cut(s)	38, 124, 359, 488
Fnu4HI	GCNGC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	2 cut(s)	56, 477
GluI	GCNGC	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	366
Hin1II	CATG	4 cut(s)	42, 128, 363, 492
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	5, 35
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	263, 459
Hpy188III	TCNNGA	4 cut(s)	125, 251, 376, 387
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	3 cut(s)	214, 222, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 274
HpyF3I	CTNAG	1 cut(s)	469
Hsp92II	CATG	4 cut(s)	42, 128, 363, 492
Kzo9I	GATC	5 cut(s)	121, 247, 378, 418, 465
LpnPI	CCDG	7 cut(s)	29, 56, 264, 313, 380, 401, 476
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	2 cut(s)	56, 477
MaeIII	GTNAC	3 cut(s)	187, 449, 472
MalI	GATC	5 cut(s)	123, 249, 380, 420, 467
MboI	GATC	5 cut(s)	121, 247, 378, 418, 465
MboII	GAAGA	2 cut(s)	22, 41
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	5 cut(s)	87, 116, 344, 400, 496
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	274, 437
MnlI	CCTC	4 cut(s)	53, 121, 154, 327
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	182, 274
NdeII	GATC	5 cut(s)	121, 247, 378, 418, 465
NlaIII	CATG	4 cut(s)	42, 128, 363, 492
NlaIV	GGNNCC	2 cut(s)	365, 461
NspI	RCATGY	1 cut(s)	492
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	365, 461
PspPI	GGNCC	2 cut(s)	364, 459
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	2 cut(s)	332, 407
RsaNI	GTAC	2 cut(s)	331, 406
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	5 cut(s)	121, 247, 378, 418, 465
Sau96I	GGNCC	2 cut(s)	364, 459
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	6 cut(s)	84, 165, 187, 194, 332, 372
SfaNI	GCATC	1 cut(s)	444
SinI	GGWCC	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	138
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	5 cut(s)	87, 116, 344, 400, 496
SspI	AATATT	2 cut(s)	74, 393
SspMI	CTAG	2 cut(s)	56, 477
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	455
TaqI	TCGA	2 cut(s)	8, 421
TasI	AATT	5 cut(s)	87, 116, 344, 400, 496
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TseI	GCWGC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	183, 357
TspGWI	ACGGA	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	3 cut(s)	87, 344, 400
XceI	RCATGY	1 cut(s)	492
XspI	CTAG	2 cut(s)	56, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.