pre-mRNA-processing factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080 |
| fragaria_vesca | FvH4_2g20550 |
| malus_domestica | MD00G1060100.v1.1 |
| prunus_persica | Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 |
| pyrus_communis | pycom05g17390 pycom10g15270 |
| rosa_chinensis | RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711 |
| rosa_laevigata | RLG00000007391 RLG00000012550 RLG00000030995 |
| rosa_multiflora | Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022 |
| rosa_roxburghii | Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090 |
| rosa_rugosa | Rorug05G0468800 Rorug06G0182100 Rorug06G0182200 |
| rosa_samantha | Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600 |
| rosa_wichuraiana | Rw1G013170 Rw5G035150 Rw6G025370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 104 |
| Acc36I | ACCTGC | 1 cut(s) | 104 |
| AccB1I | GGYRCC | 2 cut(s) | 1341, 2338 |
| AccI | GTMKAC | 1 cut(s) | 50 |
| AccII | CGCG | 1 cut(s) | 2414 |
| AclWI | GGATC | 7 cut(s) | 194, 207, 422, 651, 764, 948, 2019 |
| AcoI | YGGCCR | 4 cut(s) | 980, 2183, 2216, 2252 |
| AcsI | RAATTY | 2 cut(s) | 573, 1764 |
| AcuI | CTGAAG | 4 cut(s) | 390, 1026, 2076, 2460 |
| AcvI | CACGTG | 1 cut(s) | 1240 |
| AcyI | GRCGYC | 2 cut(s) | 306, 2339 |
| AfaI | GTAC | 6 cut(s) | 854, 869, 1551, 1715, 1791, 2279 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 260 |
| AjiI | CACGTC | 2 cut(s) | 656, 2052 |
| AjnI | CCWGG | 6 cut(s) | 157, 518, 1449, 1522, 1567, 1731 |
| Alw21I | GWGCWC | 4 cut(s) | 1033, 1531, 1780, 2203 |
| Alw26I | GTCTC | 5 cut(s) | 8, 239, 533, 1459, 1826 |
| Alw44I | GTGCAC | 2 cut(s) | 1029, 2199 |
| AlwI | GGATC | 7 cut(s) | 194, 207, 422, 651, 764, 948, 2019 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 937, 1846 |
| Ama87I | CYCGRG | 1 cut(s) | 1781 |
| ApaLI | GTGCAC | 2 cut(s) | 1029, 2199 |
| ApoI | RAATTY | 2 cut(s) | 573, 1764 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 379, 1068 |
| AspLEI | GCGC | 3 cut(s) | 2329, 2341, 2416 |
| AspS9I | GGNCC | 3 cut(s) | 886, 1227, 1275 |
| AsuHPI | GGTGA | 2 cut(s) | 1141, 1472 |
| AsuNHI | GCTAGC | 2 cut(s) | 1922, 2107 |
| AvaI | CYCGRG | 1 cut(s) | 1781 |
| AvaII | GGWCC | 1 cut(s) | 1275 |
| AxyI | CCTNAGG | 1 cut(s) | 2484 |
| BaeGI | GKGCMC | 2 cut(s) | 1033, 2203 |
| BalI | TGGCCA | 3 cut(s) | 2185, 2218, 2254 |
| BamHI | GGATCC | 1 cut(s) | 199 |
| BanI | GGYRCC | 2 cut(s) | 1341, 2338 |
| BanII | GRGCYC | 2 cut(s) | 1899, 1913 |
| BbrPI | CACGTG | 1 cut(s) | 1240 |
| BbsI | GAAGAC | 1 cut(s) | 1565 |
| Bbv12I | GWGCWC | 4 cut(s) | 1033, 1531, 1780, 2203 |
| BbvCI | CCTCAGC | 2 cut(s) | 2007, 2076 |
| BccI | CCATC | 5 cut(s) | 37, 173, 1073, 1766, 2140 |
| BceAI | ACGGC | 2 cut(s) | 2260, 2378 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 167, 201, 923, 957 |
| BciT130I | CCWGG | 6 cut(s) | 159, 520, 1451, 1524, 1569, 1733 |
| BclI | TGATCA | 1 cut(s) | 1861 |
| BcoDI | GTCTC | 5 cut(s) | 8, 239, 533, 1459, 1826 |
| BfaI | CTAG | 7 cut(s) | 276, 330, 659, 1286, 1758, 1923, 2108 |
| BfmI | CTRYAG | 3 cut(s) | 36, 1014, 1257 |
| BfoI | RGCGCY | 2 cut(s) | 2330, 2342 |
| BfuAI | ACCTGC | 1 cut(s) | 104 |
| BlpI | GCTNAGC | 2 cut(s) | 2022, 2385 |
| BmcAI | AGTACT | 1 cut(s) | 1715 |
| Bme1390I | CCNGG | 6 cut(s) | 159, 520, 1451, 1524, 1569, 1733 |
| Bme18I | GGWCC | 1 cut(s) | 1275 |
| BmeT110I | CYCGRG | 1 cut(s) | 1781 |
| BmgBI | CACGTC | 2 cut(s) | 656, 2052 |
| BmgT120I | GGNCC | 3 cut(s) | 886, 1227, 1275 |
| BmiI | GGNNCC | 5 cut(s) | 201, 887, 1343, 2340, 2463 |
| BmrFI | CCNGG | 6 cut(s) | 159, 520, 1451, 1524, 1569, 1733 |
| BmrI | ACTGGG | 1 cut(s) | 2137 |
| BmsI | GCATC | 9 cut(s) | 76, 100, 262, 391, 436, 580, 1962, 1975, 2425 |
| BmtI | GCTAGC | 2 cut(s) | 1926, 2111 |
| BmuI | ACTGGG | 1 cut(s) | 2137 |
| BpiI | GAAGAC | 1 cut(s) | 1565 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1886, 1918 |
| BpmI | CTGGAG | 1 cut(s) | 387 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2007, 2076 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2022, 2385 |
| BpuEI | CTTGAG | 5 cut(s) | 306, 1333, 1515, 1832, 2193 |
| Bsa29I | ATCGAT | 1 cut(s) | 669 |
| BsaAI | YACGTR | 1 cut(s) | 1240 |
| BsaHI | GRCGYC | 2 cut(s) | 306, 2339 |
| BsaI | GGTCTC | 1 cut(s) | 239 |
| BsaJI | CCNNGG | 5 cut(s) | 309, 504, 1449, 2331, 2424 |
| BsaWI | WCCGGW | 1 cut(s) | 1471 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1974, 2004 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 260 |
| Bse118I | RCCGGY | 3 cut(s) | 253, 2221, 2458 |
| Bse1I | ACTGG | 3 cut(s) | 942, 1404, 2143 |
| Bse21I | CCTNAGG | 1 cut(s) | 2484 |
| Bse3DI | GCAATG | 3 cut(s) | 119, 1656, 1926 |
| BseBI | CCWGG | 6 cut(s) | 159, 520, 1451, 1524, 1569, 1733 |
| BseCI | ATCGAT | 1 cut(s) | 669 |
| BseDI | CCNNGG | 5 cut(s) | 309, 504, 1449, 2331, 2424 |
| BseGI | GGATG | 2 cut(s) | 451, 2416 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 260 |
| BseMI | GCAATG | 3 cut(s) | 119, 1656, 1926 |
| BseMII | CTCAG | 9 cut(s) | 120, 1002, 1724, 1917, 1998, 2067, 2252, 2399, 2498 |
| BseNI | ACTGG | 3 cut(s) | 942, 1404, 2143 |
| BseRI | GAGGAG | 1 cut(s) | 1145 |
| BseSI | GKGCMC | 2 cut(s) | 1033, 2203 |
| BseYI | CCCAGC | 1 cut(s) | 1898 |
| BsgI | GTGCAG | 2 cut(s) | 717, 1104 |
| Bsh1236I | CGCG | 1 cut(s) | 2414 |
| BshNI | GGYRCC | 2 cut(s) | 1341, 2338 |
| BshVI | ATCGAT | 1 cut(s) | 669 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1033, 1531, 1780, 2203 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1781 |
| BsiSI | CCGG | 4 cut(s) | 254, 1472, 2222, 2459 |
| BslFI | GGGAC | 2 cut(s) | 2256, 2381 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 260 |
| BsmAI | GTCTC | 5 cut(s) | 8, 239, 533, 1459, 1826 |
| BsmBI | CGTCTC | 1 cut(s) | 8 |
| BsmFI | GGGAC | 2 cut(s) | 2256, 2381 |
| BsmI | GAATGC | 3 cut(s) | 124, 1681, 1750 |
| Bso31I | GGTCTC | 1 cut(s) | 239 |
| BsoBI | CYCGRG | 1 cut(s) | 1781 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1033, 1531, 1780, 1899, 1913, 2203 |
| Bsp1407I | TGTACA | 2 cut(s) | 1549, 1789 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2022, 2385 |
| BspCNI | CTCAG | 9 cut(s) | 121, 1001, 1723, 1916, 1999, 2068, 2251, 2398, 2497 |
| BspDI | ATCGAT | 1 cut(s) | 669 |
| BspFNI | CGCG | 1 cut(s) | 2414 |
| BspHI | TCATGA | 1 cut(s) | 646 |
| BspLI | GGNNCC | 5 cut(s) | 201, 887, 1343, 2340, 2463 |
| BspMAI | CTGCAG | 2 cut(s) | 40, 1018 |
| BspMI | ACCTGC | 1 cut(s) | 104 |
| BspOI | GCTAGC | 2 cut(s) | 1926, 2111 |
| BspPI | GGATC | 7 cut(s) | 194, 207, 422, 651, 764, 948, 2019 |
| BspQI | GCTCTTC | 2 cut(s) | 1935, 2033 |
| BspT107I | GGYRCC | 2 cut(s) | 1341, 2338 |
| BspTNI | GGTCTC | 1 cut(s) | 239 |
| BsrDI | GCAATG | 3 cut(s) | 119, 1656, 1926 |
| BsrFI | RCCGGY | 3 cut(s) | 253, 2221, 2458 |
| BsrGI | TGTACA | 2 cut(s) | 1549, 1789 |
| BsrI | ACTGG | 3 cut(s) | 942, 1404, 2143 |
| BssAI | RCCGGY | 3 cut(s) | 253, 2221, 2458 |
| BssECI | CCNNGG | 5 cut(s) | 309, 504, 1449, 2331, 2424 |
| BssNAI | GTATAC | 1 cut(s) | 51 |
| BssNI | GRCGYC | 2 cut(s) | 306, 2339 |
| BssT1I | CCWWGG | 2 cut(s) | 309, 504 |
| Bst1107I | GTATAC | 1 cut(s) | 51 |
| Bst2UI | CCWGG | 6 cut(s) | 159, 520, 1451, 1524, 1569, 1733 |
| Bst4CI | ACNGT | 8 cut(s) | 11, 379, 480, 1153, 1613, 1797, 2250, 2425 |
| Bst6I | CTCTTC | 4 cut(s) | 531, 1457, 1935, 2033 |
| BstACI | GRCGYC | 2 cut(s) | 306, 2339 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 194, 1028 |
| BstAUI | TGTACA | 2 cut(s) | 1549, 1789 |
| BstBAI | YACGTR | 1 cut(s) | 1240 |
| BstDSI | CCRYGG | 2 cut(s) | 2331, 2424 |
| BstF5I | GGATG | 2 cut(s) | 451, 2416 |
| BstFNI | CGCG | 1 cut(s) | 2414 |
| BstH2I | RGCGCY | 2 cut(s) | 2330, 2342 |
| BstHHI | GCGC | 3 cut(s) | 2329, 2341, 2416 |
| BstMAI | GTCTC | 5 cut(s) | 8, 239, 533, 1459, 1826 |
| BstNI | CCWGG | 6 cut(s) | 159, 520, 1451, 1524, 1569, 1733 |
| BstNSI | RCATGY | 4 cut(s) | 874, 1598, 1790, 2021 |
| BstSCI | CCNGG | 6 cut(s) | 157, 518, 1449, 1522, 1567, 1731 |
| BstSFI | CTRYAG | 3 cut(s) | 36, 1014, 1257 |
| BstSLI | GKGCMC | 2 cut(s) | 1033, 2203 |
| BstUI | CGCG | 1 cut(s) | 2414 |
| BstV2I | GAAGAC | 1 cut(s) | 1565 |
| BstX2I | RGATCY | 2 cut(s) | 199, 769 |
| BstYI | RGATCY | 2 cut(s) | 199, 769 |
| BstZ17I | GTATAC | 1 cut(s) | 51 |
| Bsu15I | ATCGAT | 1 cut(s) | 669 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2484 |
| BsuTUI | ATCGAT | 1 cut(s) | 669 |
| BtgI | CCRYGG | 2 cut(s) | 2331, 2424 |
| BtgZI | GCGATG | 3 cut(s) | 192, 414, 2118 |
| BtrI | CACGTC | 2 cut(s) | 656, 2052 |
| BtsCI | GGATG | 2 cut(s) | 451, 2416 |
| BtsI | GCAGTG | 3 cut(s) | 45, 1844, 1995 |
| BtsIMutI | CAGTG | 6 cut(s) | 16, 45, 1411, 1844, 1995, 2255 |
| BveI | ACCTGC | 1 cut(s) | 104 |
| CaiI | CAGNNNCTG | 2 cut(s) | 937, 1846 |
| CciI | TCATGA | 1 cut(s) | 646 |
| CfoI | GCGC | 3 cut(s) | 2329, 2341, 2416 |
| Cfr10I | RCCGGY | 3 cut(s) | 253, 2221, 2458 |
| Cfr13I | GGNCC | 3 cut(s) | 886, 1227, 1275 |
| ClaI | ATCGAT | 1 cut(s) | 669 |
| CseI | GACGC | 1 cut(s) | 314 |
| CsiI | ACCWGGT | 2 cut(s) | 1522, 1731 |
| Csp6I | GTAC | 6 cut(s) | 853, 868, 1550, 1714, 1790, 2278 |
| CviQI | GTAC | 6 cut(s) | 853, 868, 1550, 1714, 1790, 2278 |
| DinI | GGCGCC | 1 cut(s) | 2340 |
| EaeI | YGGCCR | 4 cut(s) | 980, 2183, 2216, 2252 |
| Eam1104I | CTCTTC | 4 cut(s) | 531, 1457, 1935, 2033 |
| EarI | CTCTTC | 4 cut(s) | 531, 1457, 1935, 2033 |
| Eco130I | CCWWGG | 2 cut(s) | 309, 504 |
| Eco24I | GRGCYC | 2 cut(s) | 1899, 1913 |
| Eco31I | GGTCTC | 1 cut(s) | 239 |
| Eco32I | GATATC | 1 cut(s) | 727 |
| Eco47I | GGWCC | 1 cut(s) | 1275 |
| Eco57I | CTGAAG | 4 cut(s) | 390, 1026, 2076, 2460 |
| Eco72I | CACGTG | 1 cut(s) | 1240 |
| Eco81I | CCTNAGG | 1 cut(s) | 2484 |
| Eco88I | CYCGRG | 1 cut(s) | 1781 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1227 |
| EcoRII | CCWGG | 6 cut(s) | 157, 518, 1449, 1522, 1567, 1731 |
| EcoRV | GATATC | 1 cut(s) | 727 |
| EcoT14I | CCWWGG | 2 cut(s) | 309, 504 |
| EcoT22I | ATGCAT | 3 cut(s) | 190, 1397, 2287 |
| EcoT38I | GRGCYC | 2 cut(s) | 1899, 1913 |
| EgeI | GGCGCC | 1 cut(s) | 2340 |
| EheI | GGCGCC | 1 cut(s) | 2340 |
| ErhI | CCWWGG | 2 cut(s) | 309, 504 |
| Esp3I | CGTCTC | 1 cut(s) | 8 |
| FaqI | GGGAC | 2 cut(s) | 2256, 2381 |
| FauI | CCCGC | 2 cut(s) | 2146, 2406 |
| FauNDI | CATATG | 3 cut(s) | 241, 763, 2287 |
| FbaI | TGATCA | 1 cut(s) | 1861 |
| FblI | GTMKAC | 1 cut(s) | 50 |
| FokI | GGATG | 2 cut(s) | 458, 2403 |
| FriOI | GRGCYC | 2 cut(s) | 1899, 1913 |
| FspBI | CTAG | 7 cut(s) | 276, 330, 659, 1286, 1758, 1923, 2108 |
| GlaI | GCGC | 3 cut(s) | 2328, 2340, 2415 |
| GsaI | CCCAGC | 1 cut(s) | 1902 |
| GsuI | CTGGAG | 1 cut(s) | 387 |
| HaeII | RGCGCY | 2 cut(s) | 2330, 2342 |
| HapII | CCGG | 4 cut(s) | 254, 1472, 2222, 2459 |
| HgaI | GACGC | 1 cut(s) | 314 |
| HhaI | GCGC | 3 cut(s) | 2329, 2341, 2416 |
| Hin1I | GRCGYC | 2 cut(s) | 306, 2339 |
| Hin6I | GCGC | 3 cut(s) | 2327, 2339, 2414 |
| HinP1I | GCGC | 3 cut(s) | 2327, 2339, 2414 |
| HindIII | AAGCTT | 2 cut(s) | 2115, 2211 |
| HinfI | GANTC | 8 cut(s) | 314, 338, 1190, 1378, 1477, 1497, 1814, 1871 |
| HpaII | CCGG | 4 cut(s) | 254, 1472, 2222, 2459 |
| HphI | GGTGA | 2 cut(s) | 1141, 1472 |
| Hpy166II | GTNNAC | 4 cut(s) | 51, 1031, 1725, 2201 |
| Hpy8I | GTNNAC | 4 cut(s) | 51, 1031, 1725, 2201 |
| HpyAV | CCTTC | 4 cut(s) | 780, 1298, 1996, 2379 |
| HpyCH4III | ACNGT | 8 cut(s) | 11, 379, 480, 1153, 1613, 1797, 2250, 2425 |
| HpyCH4IV | ACGT | 6 cut(s) | 655, 694, 1239, 1691, 2051, 2068 |
| HpySE526I | ACGT | 6 cut(s) | 655, 694, 1239, 1691, 2051, 2068 |
| Hsp92I | GRCGYC | 2 cut(s) | 306, 2339 |
| HspAI | GCGC | 3 cut(s) | 2327, 2339, 2414 |
| KasI | GGCGCC | 1 cut(s) | 2338 |
| Ksp22I | TGATCA | 1 cut(s) | 1861 |
| LguI | GCTCTTC | 2 cut(s) | 1935, 2033 |
| LmnI | GCTCC | 4 cut(s) | 1775, 2043, 2156, 2467 |
| LweI | GCATC | 9 cut(s) | 76, 100, 262, 391, 436, 580, 1962, 1975, 2425 |
| MabI | ACCWGGT | 2 cut(s) | 1522, 1731 |
| MaeI | CTAG | 7 cut(s) | 276, 330, 659, 1286, 1758, 1923, 2108 |
| MaeII | ACGT | 6 cut(s) | 655, 694, 1239, 1691, 2051, 2068 |
| MaeIII | GTNAC | 6 cut(s) | 230, 265, 709, 1692, 2408, 2501 |
| MflI | RGATCY | 2 cut(s) | 199, 769 |
| MhlI | GDGCHC | 6 cut(s) | 1033, 1531, 1780, 1899, 1913, 2203 |
| MlsI | TGGCCA | 3 cut(s) | 2185, 2218, 2254 |
| MluNI | TGGCCA | 3 cut(s) | 2185, 2218, 2254 |
| Mly113I | GGCGCC | 1 cut(s) | 2339 |
| MlyI | GAGTC | 2 cut(s) | 323, 1823 |
| MmeI | TCCRAC | 4 cut(s) | 241, 796, 1116, 2444 |
| Mox20I | TGGCCA | 3 cut(s) | 2185, 2218, 2254 |
| Mph1103I | ATGCAT | 3 cut(s) | 190, 1397, 2287 |
| MroXI | GAANNNNTTC | 2 cut(s) | 379, 1068 |
| MscI | TGGCCA | 3 cut(s) | 2185, 2218, 2254 |
| MseI | TTAA | 4 cut(s) | 530, 960, 1118, 1971 |
| Msp20I | TGGCCA | 3 cut(s) | 2185, 2218, 2254 |
| MspA1I | CMGCKG | 4 cut(s) | 2189, 2258, 2432, 2444 |
| MspI | CCGG | 4 cut(s) | 254, 1472, 2222, 2459 |
| MspR9I | CCNGG | 6 cut(s) | 159, 520, 1451, 1524, 1569, 1733 |
| Mva1269I | GAATGC | 3 cut(s) | 124, 1681, 1750 |
| MvaI | CCWGG | 6 cut(s) | 159, 520, 1451, 1524, 1569, 1733 |
| MvnI | CGCG | 1 cut(s) | 2414 |
| NarI | GGCGCC | 1 cut(s) | 2339 |
| NdeI | CATATG | 3 cut(s) | 241, 763, 2287 |
| NheI | GCTAGC | 2 cut(s) | 1922, 2107 |
| NlaIV | GGNNCC | 5 cut(s) | 201, 887, 1343, 2340, 2463 |
| NmuCI | GTSAC | 1 cut(s) | 265 |
| NsiI | ATGCAT | 3 cut(s) | 190, 1397, 2287 |
| NspI | RCATGY | 4 cut(s) | 874, 1598, 1790, 2021 |
| PaeI | GCATGC | 1 cut(s) | 1598 |
| PaeR7I | CTCGAG | 1 cut(s) | 1781 |
| PagI | TCATGA | 1 cut(s) | 646 |
| PaqCI | CACCTGC | 1 cut(s) | 104 |
| PciSI | GCTCTTC | 2 cut(s) | 1935, 2033 |
| PctI | GAATGC | 3 cut(s) | 124, 1681, 1750 |
| PdmI | GAANNNNTTC | 2 cut(s) | 379, 1068 |
| PfeI | GAWTC | 6 cut(s) | 338, 1190, 1378, 1477, 1497, 1871 |
| PleI | GAGTC | 2 cut(s) | 322, 1822 |
| PluTI | GGCGCC | 1 cut(s) | 2342 |
| PmaCI | CACGTG | 1 cut(s) | 1240 |
| PmlI | CACGTG | 1 cut(s) | 1240 |
| PpsI | GAGTC | 2 cut(s) | 322, 1822 |
| Ppu21I | YACGTR | 1 cut(s) | 1240 |
| Psp6I | CCWGG | 6 cut(s) | 157, 518, 1449, 1522, 1567, 1731 |
| PspCI | CACGTG | 1 cut(s) | 1240 |
| PspFI | CCCAGC | 1 cut(s) | 1898 |
| PspGI | CCWGG | 6 cut(s) | 157, 518, 1449, 1522, 1567, 1731 |
| PspN4I | GGNNCC | 5 cut(s) | 201, 887, 1343, 2340, 2463 |
| PspPI | GGNCC | 3 cut(s) | 886, 1227, 1275 |
| PspXI | VCTCGAGB | 1 cut(s) | 1781 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1706, 1738 |
| PstI | CTGCAG | 2 cut(s) | 40, 1018 |
| PstNI | CAGNNNCTG | 2 cut(s) | 937, 1846 |
| PsuI | RGATCY | 2 cut(s) | 199, 769 |
| PvuII | CAGCTG | 2 cut(s) | 2189, 2258 |
| RsaI | GTAC | 6 cut(s) | 854, 869, 1551, 1715, 1791, 2279 |
| RsaNI | GTAC | 6 cut(s) | 853, 868, 1550, 1714, 1790, 2278 |
| SapI | GCTCTTC | 2 cut(s) | 1935, 2033 |
| SaqAI | TTAA | 4 cut(s) | 530, 960, 1118, 1971 |
| Sau96I | GGNCC | 3 cut(s) | 886, 1227, 1275 |
| ScaI | AGTACT | 1 cut(s) | 1715 |
| SchI | GAGTC | 2 cut(s) | 323, 1823 |
| ScrFI | CCNGG | 6 cut(s) | 159, 520, 1451, 1524, 1569, 1733 |
| SduI | GDGCHC | 6 cut(s) | 1033, 1531, 1780, 1899, 1913, 2203 |
| SexAI | ACCWGGT | 2 cut(s) | 1522, 1731 |
| SfaNI | GCATC | 9 cut(s) | 76, 100, 262, 391, 436, 580, 1962, 1975, 2425 |
| SfcI | CTRYAG | 3 cut(s) | 36, 1014, 1257 |
| SfoI | GGCGCC | 1 cut(s) | 2340 |
| Sfr274I | CTCGAG | 1 cut(s) | 1781 |
| SinI | GGWCC | 1 cut(s) | 1275 |
| SlaI | CTCGAG | 1 cut(s) | 1781 |
| SmlI | CTYRAG | 6 cut(s) | 321, 1312, 1530, 1781, 1811, 2208 |
| SmoI | CTYRAG | 6 cut(s) | 321, 1312, 1530, 1781, 1811, 2208 |
| SphI | GCATGC | 1 cut(s) | 1598 |
| SspDI | GGCGCC | 1 cut(s) | 2338 |
| SspI | AATATT | 3 cut(s) | 100, 915, 1373 |
| SspMI | CTAG | 7 cut(s) | 276, 330, 659, 1286, 1758, 1923, 2108 |
| StyD4I | CCNGG | 6 cut(s) | 157, 518, 1449, 1522, 1567, 1731 |
| StyI | CCWWGG | 2 cut(s) | 309, 504 |
| TaaI | ACNGT | 8 cut(s) | 11, 379, 480, 1153, 1613, 1797, 2250, 2425 |
| TaiI | ACGT | 6 cut(s) | 658, 697, 1242, 1694, 2054, 2071 |
| TaqI | TCGA | 9 cut(s) | 465, 669, 1188, 1381, 1495, 1782, 1830, 2014, 2147 |
| TatI | WGTACW | 5 cut(s) | 852, 867, 1549, 1713, 1789 |
| TauI | GCSGC | 3 cut(s) | 891, 1246, 2447 |
| TfiI | GAWTC | 6 cut(s) | 338, 1190, 1378, 1477, 1497, 1871 |
| Tru1I | TTAA | 4 cut(s) | 530, 960, 1118, 1971 |
| Tru9I | TTAA | 4 cut(s) | 530, 960, 1118, 1971 |
| TscAI | CASTG | 6 cut(s) | 16, 45, 1411, 1851, 1995, 2255 |
| TseFI | GTSAC | 1 cut(s) | 265 |
| Tsp45I | GTSAC | 1 cut(s) | 265 |
| TspDTI | ATGAA | 9 cut(s) | 312, 362, 372, 380, 705, 1350, 1863, 1879, 2020 |
| TspRI | CASTG | 6 cut(s) | 16, 45, 1411, 1851, 1995, 2255 |
| VneI | GTGCAC | 2 cut(s) | 1029, 2199 |
| VpaK11BI | GGWCC | 1 cut(s) | 1275 |
| XapI | RAATTY | 2 cut(s) | 573, 1764 |
| XceI | RCATGY | 4 cut(s) | 874, 1598, 1790, 2021 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1411, 2186 |
| XhoI | CTCGAG | 1 cut(s) | 1781 |
| XmiI | GTMKAC | 1 cut(s) | 50 |
| XmnI | GAANNNNTTC | 2 cut(s) | 379, 1068 |
| XspI | CTAG | 7 cut(s) | 276, 330, 659, 1286, 1758, 1923, 2108 |
| ZrmI | AGTACT | 1 cut(s) | 1715 |
| Zsp2I | ATGCAT | 3 cut(s) | 190, 1397, 2287 |