Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Reverse (-)

1240445 .. 1242134

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCAGGATAACATCTTAAAAATTCGAAAAGTTTATGATGCTTTTCTAGCAGAGTTTCTTTTGTGTTATGGGTATTGGAAAAAGTATGCAGATCATGAGGCACGTTTTGGTGTTATTGATAAAGTTGTGGAGGTTTATGAACGAGCAGTTCAAGCTGTTACCTATTCAGCTGACATTTGGTTGCATTACTGCACATTTGCCACAACTACTTTTGGAGATTCAGACACTATCAGAAGGCTTTTTGAGCAAGGATTGGCGTATGTTGGAACAGATTACTTGTCCTTTCCTCTTTGGGACAGGTTTTGCAACTGTTTTGTTTGTATTCCTGATGCCAATAGTTTTAATAGTTTTAAGGAGTTAGCTGGAAGTCGGCCTCTCTCAGAATTGAGAACTGCTGCTGTAGCAGCAGCAAGTGCCACTTCAAAGGATGGCGTACAAGCAAACGGGGTCAGTTTGAAATCGGAAATTGAAGTAGAAAATATATCTACAGAACTATTTCATTTAGTGAAGTTCACAATGAAATCGTTGAGCTCAAGAGTGTTGGATATGGTTGGACTTGATCTACTAATTAATGCAAAGTATCCTGATCATGAAATTATTAGGTGTACTGGAGTTGTTTATGGGATGGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.82

Weight (kDa)

5.39

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	2 - 103	1.1e-36	PRP39 N-terminal HAT repeat
Suf	PF05843	2 - 114	1.1e-06	Suppressor of forked protein (Suf)
HAT_PRP39_C	PF23241	26 - 86	1.1e-06	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	21
AfaI	GTAC	2 cut(s)	435, 607
AgsI	TTSAA	4 cut(s)	152, 423, 457, 470
AluBI	AGCT	4 cut(s)	155, 170, 362, 531
AluI	AGCT	4 cut(s)	155, 170, 362, 531
Alw21I	GWGCWC	1 cut(s)	533
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	395, 404, 407
ApoI	RAATTY	1 cut(s)	21
AseI	ATTAAT	1 cut(s)	570
Asp700I	GAANNNNTTC	1 cut(s)	495
AsuII	TTCGAA	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	3 cut(s)	382, 416, 419
BccI	CCATC	2 cut(s)	422, 619
BciVI	GTATCC	1 cut(s)	591
BclI	TGATCA	1 cut(s)	586
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	2 cut(s)	399, 486
BfuI	GTATCC	1 cut(s)	591
BisI	GCNGC	3 cut(s)	396, 405, 408
BlsI	GCNGC	3 cut(s)	397, 406, 409
BmsI	GCATC	2 cut(s)	28, 319
BpmI	CTGGAG	1 cut(s)	630
Bpu14I	TTCGAA	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	613
BseGI	GGATG	2 cut(s)	433, 630
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	613
BseXI	GCAGC	3 cut(s)	382, 416, 419
BsgI	GTGCAG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	3 cut(s)	91, 559, 586
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	1 cut(s)	392
BspHI	TCATGA	2 cut(s)	94, 589
BspT104I	TTCGAA	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	613
BssMI	GATC	3 cut(s)	91, 559, 586
Bst4CI	ACNGT	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	433, 630
BstKTI	GATC	3 cut(s)	94, 562, 589
BstMBI	GATC	3 cut(s)	91, 559, 586
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 152, 244, 401, 404, 413
BstSFI	CTRYAG	2 cut(s)	399, 486
BstV1I	GCAGC	3 cut(s)	382, 416, 419
BsuI	GTATCC	1 cut(s)	591
BsuRI	GGCC	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	433, 630
CciI	TCATGA	2 cut(s)	94, 589
Csp6I	GTAC	2 cut(s)	434, 606
CviAII	CATG	2 cut(s)	95, 590
CviJI	RGCY	6 cut(s)	155, 170, 238, 362, 373, 531
CviKI_1	RGCY	6 cut(s)	155, 170, 238, 362, 373, 531
CviQI	GTAC	2 cut(s)	434, 606
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	3 cut(s)	93, 561, 588
DpnII	GATC	3 cut(s)	91, 559, 586
Ecl136II	GAGCTC	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	533
Eco53kI	GAGCTC	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	533
FaeI	CATG	2 cut(s)	98, 593
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	94, 589
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	396, 405, 408
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	3 cut(s)	396, 405, 408
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	3 cut(s)	396, 405, 408
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	98, 593
HinfI	GANTC	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	513, 606
Hpy188I	TCNGA	4 cut(s)	223, 233, 382, 463
Hpy188III	TCNNGA	5 cut(s)	95, 326, 534, 584, 590
Hpy8I	GTNNAC	2 cut(s)	513, 606
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	6 cut(s)	4, 89, 184, 192, 306, 575
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 152, 244, 401, 404, 413
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	2 cut(s)	98, 593
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	91, 559, 586
LpnPI	CCDG	5 cut(s)	283, 339, 348, 594, 597
Lsp1109I	GCAGC	3 cut(s)	382, 416, 419
LweI	GCATC	2 cut(s)	28, 319
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	3 cut(s)	93, 561, 588
MboI	GATC	3 cut(s)	91, 559, 586
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	5 cut(s)	21, 383, 465, 567, 594
MmeI	TCCRAC	3 cut(s)	244, 522, 532
MnlI	CCTC	4 cut(s)	91, 124, 297, 384
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	4 cut(s)	17, 342, 351, 570
MspA1I	CMGCKG	1 cut(s)	170
MwoI	GCNNNNNNNGC	6 cut(s)	47, 152, 244, 401, 404, 413
NdeII	GATC	3 cut(s)	91, 559, 586
NlaIII	CATG	2 cut(s)	98, 593
NspV	TTCGAA	1 cut(s)	25
PagI	TCATGA	2 cut(s)	94, 589
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	397, 406, 409
PshBI	ATTAAT	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	435, 607
RsaNI	GTAC	2 cut(s)	434, 606
SacI	GAGCTC	1 cut(s)	533
SaqAI	TTAA	4 cut(s)	17, 342, 351, 570
SatI	GCNGC	3 cut(s)	396, 405, 408
Sau3AI	GATC	3 cut(s)	91, 559, 586
SduI	GDGCHC	1 cut(s)	533
SetI	ASST	9 cut(s)	106, 135, 157, 164, 172, 302, 364, 533, 605
SfaNI	GCATC	2 cut(s)	28, 319
SfcI	CTRYAG	2 cut(s)	399, 486
SfuI	TTCGAA	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
Sse9I	AATT	5 cut(s)	21, 383, 465, 567, 594
SspMI	CTAG	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	533
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	25
TasI	AATT	5 cut(s)	21, 383, 465, 567, 594
TatI	WGTACW	1 cut(s)	605
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	4 cut(s)	17, 342, 351, 570
Tru9I	TTAA	4 cut(s)	17, 342, 351, 570
TseI	GCWGC	3 cut(s)	395, 404, 407
TspDTI	ATGAA	4 cut(s)	153, 488, 533, 606
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.