Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Forward (+)

21110832 .. 21118400

Gene Structure 7569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGGGAGACAGTGAGACTGTCGTTGCTCAAACAAATGCAATGATGGGATATTCATCAGCAGCCTATACTACGACAGGTTATTCTGATTCCAGCTCAAATATTGCTCAGGAGGCTACCACAGAAATTTCTGCTACTCCTGCTCCTGTAGATGCAACCCATCCAATGCCTGGTGATGGAAATGCATATTCTGTGGCTTCCGATTCTCTCATGCAAGAATCACATTCTTATGCAACATATGAGGCTCAACCAGCTGTTGGTGTTGCTGATGCTGGTGGGAATGTTGCTAGCAGTGAACATGAAACCATGGCATCATCGCAAGCTGCCAGTTATGATTCTACTGCTAATGGTGTTGCTACTTCTGGGGTGGGAACTGTTTCATCTGTTGGAAATGGAGATGCTTCAGACAACATGGCTGGATCTCTGGATGCACAACAATATGTGGATGGTTCTGCTATGTCTGCCGAAGAAGATAGACTATGGAACATTGTGAGGGCTAATTCTTTAGATTTTAATGCCTGGACTGCTTTAATTGAAGAGACAGAGAAGGTTGCAGAGGATAACATATTAAAAATTCGAAAAGTTTACGATGCTTTTCTAGCAGAGTTTCCTTTGTGTTATGGGTATTGGAAAAAGTATGCAGATCATGAGGCACGTTTTGGTGTTATTGATAAAGTTGTGGAGGTTTATGAACGAGCAGTTCAAGCTGTTACCTATTCAGTTGACATTTGGTTGCATTACTGCACATTTGCCACAACTACTTTTGGAGATCCAGACAGTATCAGAAGGCTTTTTGAGCGAGGATTAGCGTATGTTGGAACAGATTACTTGTCCTTTCCTCTTTGGGACAGGTACATTGATTATGAATTTATGCAGCAAGCATGGGGCCAGCTTGTTGTGATCTACTCACGAATATTAGAGAATCCGAACCAACAACTGGATCGATATTTAAACAGTTTTAAGGAGTTAGCTGGAAGTCGGCCTCTCTCAGAATTGAGAACTGCTGAAGAAGCTACTGCTGCTGCAGCAGCAGCAAGTGTCACTTCAGAGGATGGTGTACAAGCAAACGGGGAAGATGCTCAACCTGATGGTGCAGAACCATCTCCTGCTATCTTAACCGAAGCGGAGGAGTTGGAGAAGTTTATCGCCATTCGAGAAGAGATGTATAAAAAAGCTAAAGAGTTCGATTCTAAGATAATTAATTTTGAAACAGCCATTAGGAGGCCTTACTTTCACGTGAGGCCCCTTAATGCTGCAGAGCTTGAAAATTGGAACAACTATCTTGACTTTATTGAAAGGGAAGGTGACTTTAACAAGGTGGTCAAGTTATATGAAAGATGCCTGATTGCTTGCGCTAATTATCCTGAATACTGGATTCGTTATGTCCTAAGTATGGAAGCTAGTGGAAGTTTGGATCTTGCCAATAATGCTCTTGATCGTGCAACCCAGGTTTTTGTGAAGACAACCAGAGATTCACCTTTTGCTGCTCGCTTCAAAGAGCAAAGTGGAGATATCCCTGGTGCTCAGGCTGCCTATCAACTCGTACATTCTGAAATTTCACCTGGTCTTCTTGAAGCAATCATTAAGCATGCAAACATGGAAAACCGTCTGGGAAATATGGAAGCTGCCTACTCCTTGTTTGAACAGGCCATTGCCATTGAAAAAGGAAAGGAGCATTCTCAGACCTTACCCGTGCTGTTTGCTCAATACGCACGGTTCGCATACTTGGTATCTTTGAATGCTGAAAAAGCCAGGACTATCTTTCTTGAAGCGGTCGAGCATGTTCAATTGTCAAAAGCATTCCTCGAGGCCCTGATACATTTCGAGTCGATACATTCGTTGCCAAAGCAAATTGATTACATAGACTCCTTGGTTGTGAAGTTTGTGGAGTCCAACTCAGAGAACCCCAATTTTGCGAGTGTTGCTGACAGAGAGGAGTTATCTTGCATCTATTTGGAGTTTCTAAACCTCTTTGGGGATGCACAGTCTATCAAGAAGGCTGAGGATCGGCATGCTAAGCTCTTTTTACTTCATAGGAGCACCACTTCAGAGTTGAAAAAACGGCAAGCTGAAGATTACCTATCTTCTGATAAAGCAAAGATGGCAAAATCCTACTCTGGTGTTCCTTCACCTGCGCAGTCTATTATGGGAGCATATCCAAATGCACAAAACCAGTGGGCAGCTGGTTACGGTGTGCAACCTCAAGCTTGGCCACCAGCTACACAAGCACAGGGACAACAATGGACCCCTGGTTATACCCAACAGGCATACAATGCATATGGTGGTTATCAGCAAGTACCTGCTGCAGTGCCACAGACTGCTGCTTATCCTGCTACATATCCCGCCACATATCCTGCTCAGCCAGCGGCCGCAGCTACTGCAGTAGCAGCTGTAGCACCAGCTCAGCAACCTGCTCCGGCTCAACAGGCGTATTATGGGAATTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

816

Amino Acids

89.83

Weight (kDa)

4.71

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	157 - 321	1e-60	PRP39 N-terminal HAT repeat
Suf	PF05843	158 - 288	2.3e-13	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N	PF23233	165 - 306	1.2e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	209 - 270	3e-06	PRP39 C-terminal HAT repeat
HAT_PRP39_C	PF23241	397 - 535	8e-43	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2137
AbsI	CCTCGAGG	1 cut(s)	1802
Acc16I	TGCGCA	1 cut(s)	2133
Acc36I	ACCTGC	3 cut(s)	2137, 2305, 2416
AccB7I	CCANNNNNTGG	3 cut(s)	167, 254, 934
AciI	CCGC	5 cut(s)	1121, 1769, 2340, 2363, 2367
AclWI	GGATC	5 cut(s)	424, 761, 945, 1419, 2010
AcoI	YGGCCR	2 cut(s)	2207, 2364
AcsI	RAATTY	4 cut(s)	123, 570, 863, 1551
AcuI	CTGAAG	5 cut(s)	384, 1023, 1026, 2028, 2088
AcvI	CACGTG	1 cut(s)	1234
AfaI	GTAC	4 cut(s)	851, 1056, 1542, 2295
AfiI	CCNNNNNNNGG	7 cut(s)	167, 173, 254, 934, 1218, 1390, 1972
AjnI	CCWGG	7 cut(s)	166, 515, 1443, 1513, 1558, 1748, 2245
Alw21I	GWGCWC	2 cut(s)	1522, 2039
Alw26I	GTCTC	2 cut(s)	8, 530
AlwI	GGATC	5 cut(s)	424, 761, 945, 1419, 2010
AlwNI	CAGNNNCTG	1 cut(s)	2375
Ama87I	CYCGRG	1 cut(s)	1802
AoxI	GGCC	8 cut(s)	883, 977, 1220, 1238, 1644, 1806, 2207, 2364
ApoI	RAATTY	4 cut(s)	123, 570, 863, 1551
AseI	ATTAAT	1 cut(s)	1197
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	1352, 2134
AspS9I	GGNCC	4 cut(s)	883, 1239, 1807, 2241
AsuHPI	GGTGA	5 cut(s)	182, 1313, 1464, 1548, 2118
AsuII	TTCGAA	1 cut(s)	574
AsuNHI	GCTAGC	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	1802
AvaII	GGWCC	1 cut(s)	2241
BaeI	ACNNNNGTAYC	2 cut(s)	1820, 1853
BalI	TGGCCA	1 cut(s)	2209
BbrPI	CACGTG	1 cut(s)	1234
BbsI	GAAGAC	2 cut(s)	1463, 1556
Bbv12I	GWGCWC	2 cut(s)	1522, 2039
BbvCI	CCTCAGC	1 cut(s)	1998
BccI	CCATC	8 cut(s)	37, 165, 167, 437, 1043, 1079, 1105, 2092
BceAI	ACGGC	1 cut(s)	2075
BciT130I	CCWGG	7 cut(s)	168, 517, 1445, 1515, 1560, 1750, 2247
BcoDI	GTCTC	2 cut(s)	8, 530
BfaI	CTAG	3 cut(s)	285, 596, 1398
BfmI	CTRYAG	6 cut(s)	144, 1020, 1251, 2301, 2376, 2388
BfuAI	ACCTGC	3 cut(s)	2137, 2305, 2416
BlpI	GCTNAGC	3 cut(s)	2013, 2355, 2400
Bme1390I	CCNGG	7 cut(s)	168, 517, 1445, 1515, 1560, 1750, 2247
Bme18I	GGWCC	1 cut(s)	2241
BmeT110I	CYCGRG	1 cut(s)	1802
BmgT120I	GGNCC	4 cut(s)	883, 1239, 1807, 2241
BmiI	GGNNCC	3 cut(s)	884, 1241, 2243
BmrFI	CCNGG	7 cut(s)	168, 517, 1445, 1515, 1560, 1750, 2247
BmtI	GCTAGC	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	1463, 1556
BplI	GAGNNNNNCTC	2 cut(s)	1877, 1909
Bpu10I	CCTNAGC	3 cut(s)	105, 1521, 1998
Bpu1102I	GCTNAGC	3 cut(s)	2013, 2355, 2400
Bpu14I	TTCGAA	1 cut(s)	574
BpuEI	CTTGAG	1 cut(s)	2184
Bsa29I	ATCGAT	1 cut(s)	940
BsaAI	YACGTR	1 cut(s)	1234
BsaBI	GATNNNNATC	1 cut(s)	52
BsaJI	CCNNGG	5 cut(s)	303, 1443, 1513, 1866, 2245
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 1847, 1877
Bsc4I	CCNNNNNNNGG	7 cut(s)	167, 173, 254, 934, 1218, 1390, 1972
Bse1I	ACTGG	5 cut(s)	324, 939, 1373, 2170, 2446
Bse3DI	GCAATG	2 cut(s)	45, 1647
Bse8I	GATNNNNATC	1 cut(s)	52
BseBI	CCWGG	7 cut(s)	168, 517, 1445, 1515, 1560, 1750, 2247
BseCI	ATCGAT	1 cut(s)	940
BseDI	CCNNGG	5 cut(s)	303, 1443, 1513, 1866, 2245
BseGI	GGATG	5 cut(s)	157, 430, 448, 1054, 1981
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	7 cut(s)	167, 173, 254, 934, 1218, 1390, 1972
BseMI	GCAATG	2 cut(s)	45, 1647
BseMII	CTCAG	8 cut(s)	119, 999, 1535, 1691, 1908, 1989, 2369, 2414
BseNI	ACTGG	5 cut(s)	324, 939, 1373, 2170, 2446
BseRI	GAGGAG	2 cut(s)	1139, 1946
BseX3I	CGGCCG	1 cut(s)	2364
BsgI	GTGCAG	2 cut(s)	724, 1110
Bsh1285I	CGRYCG	2 cut(s)	1773, 2367
BshFI	GGCC	8 cut(s)	885, 979, 1222, 1240, 1646, 1808, 2209, 2366
BshVI	ATCGAT	1 cut(s)	940
BsiEI	CGRYCG	2 cut(s)	1773, 2367
BsiHKAI	GWGCWC	2 cut(s)	1522, 2039
BsiHKCI	CYCGRG	1 cut(s)	1802
BsiSI	CCGG	1 cut(s)	2414
BslFI	GGGAC	2 cut(s)	857, 2244
BslI	CCNNNNNNNGG	7 cut(s)	167, 173, 254, 934, 1218, 1390, 1972
BsmAI	GTCTC	2 cut(s)	8, 530
BsmFI	GGGAC	2 cut(s)	857, 2244
BsmI	GAATGC	3 cut(s)	1672, 1741, 1796
BsnI	GGCC	8 cut(s)	885, 979, 1222, 1240, 1646, 1808, 2209, 2366
BsoBI	CYCGRG	1 cut(s)	1802
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1286I	GDGCHC	2 cut(s)	1522, 2039
Bsp1407I	TGTACA	1 cut(s)	1054
Bsp143I	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2002
Bsp1720I	GCTNAGC	3 cut(s)	2013, 2355, 2400
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	5 cut(s)	1121, 1769, 2340, 2363, 2367
BspANI	GGCC	8 cut(s)	885, 979, 1222, 1240, 1646, 1808, 2209, 2366
BspCNI	CTCAG	8 cut(s)	118, 998, 1534, 1690, 1907, 1990, 2368, 2413
BspDI	ATCGAT	1 cut(s)	940
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	3 cut(s)	884, 1241, 2243
BspMAI	CTGCAG	4 cut(s)	1024, 1255, 2305, 2380
BspMI	ACCTGC	3 cut(s)	2137, 2305, 2416
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	5 cut(s)	424, 761, 945, 1419, 2010
BspT104I	TTCGAA	1 cut(s)	574
BsrDI	GCAATG	2 cut(s)	45, 1647
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	5 cut(s)	324, 939, 1373, 2170, 2446
BssECI	CCNNGG	5 cut(s)	303, 1443, 1513, 1866, 2245
BssMI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2002
BssT1I	CCWWGG	2 cut(s)	303, 1866
Bst2UI	CCWGG	7 cut(s)	168, 517, 1445, 1515, 1560, 1750, 2247
Bst4CI	ACNGT	9 cut(s)	11, 19, 373, 776, 953, 1604, 1713, 1983, 2189
Bst6I	CTCTTC	2 cut(s)	528, 1149
BstAPI	GCANNNNNTGC	2 cut(s)	2270, 2375
BstAUI	TGTACA	1 cut(s)	1054
BstBAI	YACGTR	1 cut(s)	1234
BstBI	TTCGAA	1 cut(s)	574
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	5 cut(s)	157, 430, 448, 1054, 1981
BstHHI	GCGC	2 cut(s)	1352, 2134
BstKTI	GATC	8 cut(s)	419, 643, 769, 900, 940, 1414, 1435, 2005
BstMAI	GTCTC	2 cut(s)	8, 530
BstMBI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2002
BstMCI	CGRYCG	2 cut(s)	1773, 2367
BstNI	CCWGG	7 cut(s)	168, 517, 1445, 1515, 1560, 1750, 2247
BstNSI	RCATGY	3 cut(s)	1589, 1781, 2012
BstSCI	CCNGG	7 cut(s)	166, 515, 1443, 1513, 1558, 1748, 2245
BstSFI	CTRYAG	6 cut(s)	144, 1020, 1251, 2301, 2376, 2388
BstV2I	GAAGAC	2 cut(s)	1463, 1556
BstX2I	RGATCY	3 cut(s)	416, 766, 1411
BstYI	RGATCY	3 cut(s)	416, 766, 1411
BstZI	CGGCCG	1 cut(s)	2364
Bsu15I	ATCGAT	1 cut(s)	940
BsuRI	GGCC	8 cut(s)	885, 979, 1222, 1240, 1646, 1808, 2209, 2366
BsuTUI	ATCGAT	1 cut(s)	940
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	5 cut(s)	157, 430, 448, 1054, 1981
BtsI	GCAGTG	2 cut(s)	295, 2310
BtsIMutI	CAGTG	4 cut(s)	16, 295, 2177, 2310
BveI	ACCTGC	3 cut(s)	2137, 2305, 2416
CaiI	CAGNNNCTG	1 cut(s)	2375
CciI	TCATGA	1 cut(s)	643
CciNI	GCGGCCGC	1 cut(s)	2364
CfoI	GCGC	2 cut(s)	1352, 2134
Cfr13I	GGNCC	4 cut(s)	883, 1239, 1807, 2241
ClaI	ATCGAT	1 cut(s)	940
CsiI	ACCWGGT	1 cut(s)	1558
Csp6I	GTAC	4 cut(s)	850, 1055, 1541, 2294
CspCI	CAANNNNNGTGG	2 cut(s)	2153, 2188
CviQI	GTAC	4 cut(s)	850, 1055, 1541, 2294
DpnI	GATC	8 cut(s)	418, 642, 768, 899, 939, 1413, 1434, 2004
DpnII	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2002
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	2 cut(s)	2207, 2364
EagI	CGGCCG	1 cut(s)	2364
Eam1104I	CTCTTC	2 cut(s)	528, 1149
EarI	CTCTTC	2 cut(s)	528, 1149
EclXI	CGGCCG	1 cut(s)	2364
Eco130I	CCWWGG	2 cut(s)	303, 1866
Eco147I	AGGCCT	1 cut(s)	1222
Eco32I	GATATC	1 cut(s)	1510
Eco47I	GGWCC	1 cut(s)	2241
Eco52I	CGGCCG	1 cut(s)	2364
Eco57I	CTGAAG	5 cut(s)	384, 1023, 1026, 2028, 2088
Eco72I	CACGTG	1 cut(s)	1234
Eco88I	CYCGRG	1 cut(s)	1802
EcoO109I	RGGNCCY	2 cut(s)	1239, 1807
EcoRII	CCWGG	7 cut(s)	166, 515, 1443, 1513, 1558, 1748, 2245
EcoRV	GATATC	1 cut(s)	1510
EcoT14I	CCWWGG	2 cut(s)	303, 1866
EcoT22I	ATGCAT	2 cut(s)	184, 2275
ErhI	CCWWGG	2 cut(s)	303, 1866
FalI	AAGNNNNNCTT	2 cut(s)	1024, 1056
FaqI	GGGAC	2 cut(s)	857, 2244
FauI	CCCGC	1 cut(s)	2347
FauNDI	CATATG	2 cut(s)	235, 2275
FokI	GGATG	5 cut(s)	144, 437, 455, 1061, 1988
FspBI	CTAG	3 cut(s)	285, 596, 1398
FspI	TGCGCA	1 cut(s)	2133
GlaI	GCGC	2 cut(s)	1351, 2133
HaeIII	GGCC	8 cut(s)	885, 979, 1222, 1240, 1646, 1808, 2209, 2366
HapII	CCGG	1 cut(s)	2414
HhaI	GCGC	2 cut(s)	1352, 2134
Hin6I	GCGC	2 cut(s)	1350, 2132
HinP1I	GCGC	2 cut(s)	1350, 2132
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	2202
HpaII	CCGG	1 cut(s)	2414
HphI	GGTGA	5 cut(s)	182, 1313, 1464, 1548, 2118
Hpy166II	GTNNAC	4 cut(s)	293, 583, 721, 1055
Hpy8I	GTNNAC	4 cut(s)	293, 583, 721, 1055
HpyAV	CCTTC	5 cut(s)	538, 777, 1292, 1987, 2133
HpyCH4III	ACNGT	9 cut(s)	11, 19, 373, 776, 953, 1604, 1713, 1983, 2189
HpyCH4IV	ACGT	2 cut(s)	652, 1233
HpySE526I	ACGT	2 cut(s)	652, 1233
HspAI	GCGC	2 cut(s)	1350, 2132
Kzo9I	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2002
LmnI	GCTCC	5 cut(s)	145, 1669, 2034, 2147, 2416
MabI	ACCWGGT	1 cut(s)	1558
MaeI	CTAG	3 cut(s)	285, 596, 1398
MaeII	ACGT	2 cut(s)	652, 1233
MaeIII	GTNAC	4 cut(s)	706, 1036, 1301, 2183
MalI	GATC	8 cut(s)	418, 642, 768, 899, 939, 1413, 1434, 2004
MboI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2002
MfeI	CAATTG	1 cut(s)	1784
MflI	RGATCY	3 cut(s)	416, 766, 1411
MhlI	GDGCHC	2 cut(s)	1522, 2039
MlsI	TGGCCA	1 cut(s)	2209
MluNI	TGGCCA	1 cut(s)	2209
MlyI	GAGTC	3 cut(s)	1832, 1856, 1895
MmeI	TCCRAC	4 cut(s)	364, 793, 1110, 1914
Mox20I	TGGCCA	1 cut(s)	2209
Mph1103I	ATGCAT	2 cut(s)	184, 2275
MroXI	GAANNNNTTC	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	2209
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	2209
MspA1I	CMGCKG	4 cut(s)	251, 2180, 2363, 2387
MspI	CCGG	1 cut(s)	2414
MspR9I	CCNGG	7 cut(s)	168, 517, 1445, 1515, 1560, 1750, 2247
MunI	CAATTG	1 cut(s)	1784
Mva1269I	GAATGC	3 cut(s)	1672, 1741, 1796
MvaI	CCWGG	7 cut(s)	168, 517, 1445, 1515, 1560, 1750, 2247
NcoI	CCATGG	1 cut(s)	303
NdeI	CATATG	2 cut(s)	235, 2275
NdeII	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2002
NheI	GCTAGC	1 cut(s)	284
NlaIV	GGNNCC	3 cut(s)	884, 1241, 2243
NmuCI	GTSAC	2 cut(s)	1036, 1301
NotI	GCGGCCGC	1 cut(s)	2364
NsbI	TGCGCA	1 cut(s)	2133
NsiI	ATGCAT	2 cut(s)	184, 2275
NspI	RCATGY	3 cut(s)	1589, 1781, 2012
NspV	TTCGAA	1 cut(s)	574
PaeI	GCATGC	2 cut(s)	1589, 2012
PaeR7I	CTCGAG	1 cut(s)	1802
PagI	TCATGA	1 cut(s)	643
PaqCI	CACCTGC	1 cut(s)	2137
PceI	AGGCCT	1 cut(s)	1222
PcsI	WCGNNNNNNNCGW	1 cut(s)	1832
PctI	GAATGC	3 cut(s)	1672, 1741, 1796
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	8 cut(s)	86, 200, 215, 332, 919, 1184, 1372, 1469
PflMI	CCANNNNNTGG	3 cut(s)	167, 254, 934
PleI	GAGTC	3 cut(s)	1831, 1856, 1894
PmaCI	CACGTG	1 cut(s)	1234
PmlI	CACGTG	1 cut(s)	1234
PpsI	GAGTC	3 cut(s)	1831, 1856, 1894
Ppu21I	YACGTR	1 cut(s)	1234
PshBI	ATTAAT	1 cut(s)	1197
Psp6I	CCWGG	7 cut(s)	166, 515, 1443, 1513, 1558, 1748, 2245
PspCI	CACGTG	1 cut(s)	1234
PspGI	CCWGG	7 cut(s)	166, 515, 1443, 1513, 1558, 1748, 2245
PspN4I	GGNNCC	3 cut(s)	884, 1241, 2243
PspPI	GGNCC	4 cut(s)	883, 1239, 1807, 2241
PspXI	VCTCGAGB	1 cut(s)	1802
PstI	CTGCAG	4 cut(s)	1024, 1255, 2305, 2380
PstNI	CAGNNNCTG	1 cut(s)	2375
PsuI	RGATCY	3 cut(s)	416, 766, 1411
PvuII	CAGCTG	3 cut(s)	251, 2180, 2387
RsaI	GTAC	4 cut(s)	851, 1056, 1542, 2295
RsaNI	GTAC	4 cut(s)	850, 1055, 1541, 2294
RseI	CAYNNNNRTG	1 cut(s)	225
Sau3AI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2002
Sau96I	GGNCC	4 cut(s)	883, 1239, 1807, 2241
SchI	GAGTC	3 cut(s)	1832, 1856, 1895
ScrFI	CCNGG	7 cut(s)	168, 517, 1445, 1515, 1560, 1750, 2247
SduI	GDGCHC	2 cut(s)	1522, 2039
SexAI	ACCWGGT	1 cut(s)	1558
SfcI	CTRYAG	6 cut(s)	144, 1020, 1251, 2301, 2376, 2388
Sfr274I	CTCGAG	1 cut(s)	1802
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	1 cut(s)	2241
SlaI	CTCGAG	1 cut(s)	1802
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	1802, 2199
SmoI	CTYRAG	2 cut(s)	1802, 2199
SphI	GCATGC	2 cut(s)	1589, 2012
SseBI	AGGCCT	1 cut(s)	1222
SsiI	CCGC	5 cut(s)	1121, 1769, 2340, 2363, 2367
SspI	AATATT	2 cut(s)	100, 912
SspMI	CTAG	3 cut(s)	285, 596, 1398
StuI	AGGCCT	1 cut(s)	1222
StyD4I	CCNGG	7 cut(s)	166, 515, 1443, 1513, 1558, 1748, 2245
StyI	CCWWGG	2 cut(s)	303, 1866
TaaI	ACNGT	9 cut(s)	11, 19, 373, 776, 953, 1604, 1713, 1983, 2189
TaiI	ACGT	2 cut(s)	655, 1236
TaqI	TCGA	8 cut(s)	574, 940, 1150, 1182, 1773, 1803, 1821, 1826
TatI	WGTACW	1 cut(s)	1054
TauI	GCSGC	2 cut(s)	2366, 2369
TfiI	GAWTC	8 cut(s)	86, 200, 215, 332, 919, 1184, 1372, 1469
TscAI	CASTG	4 cut(s)	16, 295, 2177, 2310
TseFI	GTSAC	2 cut(s)	1036, 1301
Tsp45I	GTSAC	2 cut(s)	1036, 1301
TspDTI	ATGAA	7 cut(s)	42, 312, 366, 702, 876, 1344, 2018
TspRI	CASTG	4 cut(s)	16, 295, 2177, 2310
Van91I	CCANNNNNTGG	3 cut(s)	167, 254, 934
VpaK11BI	GGWCC	1 cut(s)	2241
VspI	ATTAAT	1 cut(s)	1197
XapI	RAATTY	4 cut(s)	123, 570, 863, 1551
XceI	RCATGY	3 cut(s)	1589, 1781, 2012
XcmI	CCANNNNNNNNNTGG	2 cut(s)	164, 2177
XhoI	CTCGAG	1 cut(s)	1802
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	3 cut(s)	285, 596, 1398
Zsp2I	ATGCAT	2 cut(s)	184, 2275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.