Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Reverse (-)

54941377 .. 54942710

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG355000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTTTCAAGCTTTTTGAGCAAGGATTGGCGTATGTTGGAACAGATTACTTGTCCTTTCCTCTTTGGGACAGGTACATTGATTATGAATTTATGCAGCAAGCATGGGGCCAGCTTGTTGTGATCTACTCACGAATATTAGAGAATCCGTACCAACAACTGGATCGATATTTAAACAGCATCTATAATACTTGTTGCTGTCGGACCCTGATCTTAGTAACTAGTTATGAGACATGTCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.73

Weight (kDa)

4.51

Isoelectric Point (pI)

14.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	4 - 60	1.1e-14	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	2 cut(s)	77, 152
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	10
AhlI	ACTAGT	1 cut(s)	221
AluBI	AGCT	2 cut(s)	13, 115
AluI	AGCT	2 cut(s)	13, 115
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	109, 204
AvaII	GGWCC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	109, 204
BmiI	GGNNCC	2 cut(s)	110, 206
BmsI	GCATC	1 cut(s)	189
Bsa29I	ATCGAT	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	123, 163, 210
BspANI	GGCC	1 cut(s)	111
BspDI	ATCGAT	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	110, 206
BspPI	GGATC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	123, 163, 210
BstC8I	GCNNGC	2 cut(s)	102, 113
BstDEI	CTNAG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	126, 166, 213
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	3 cut(s)	123, 163, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	102, 113
Cfr13I	GGNCC	2 cut(s)	109, 204
ClaI	ATCGAT	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	76, 151
CviAII	CATG	2 cut(s)	105, 234
CviJI	RGCY	4 cut(s)	5, 13, 111, 115
CviKI_1	RGCY	4 cut(s)	5, 13, 111, 115
CviQI	GTAC	2 cut(s)	76, 151
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	3 cut(s)	125, 165, 212
DpnII	GATC	3 cut(s)	123, 163, 210
DraI	TTTAAA	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	204
FaeI	CATG	2 cut(s)	108, 237
FaiI	YATR	7 cut(s)	36, 87, 95, 106, 186, 228, 235
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	104, 233
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	108, 237
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	108, 237
Kzo9I	GATC	3 cut(s)	123, 163, 210
LpnPI	CCDG	4 cut(s)	58, 125, 146, 221
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	125, 165, 212
MboI	GATC	3 cut(s)	123, 163, 210
MluCI	AATT	2 cut(s)	89, 241
MmeI	TCCRAC	2 cut(s)	19, 182
MnlI	CCTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeII	GATC	3 cut(s)	123, 163, 210
NlaIII	CATG	2 cut(s)	108, 237
NlaIV	GGNNCC	2 cut(s)	110, 206
NspI	RCATGY	1 cut(s)	237
PciI	ACATGT	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	99
PscI	ACATGT	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	110, 206
PspPI	GGNCC	2 cut(s)	109, 204
RsaI	GTAC	2 cut(s)	77, 152
RsaNI	GTAC	2 cut(s)	76, 151
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	3 cut(s)	123, 163, 210
Sau96I	GGNCC	2 cut(s)	109, 204
SetI	ASST	3 cut(s)	15, 77, 117
SfaNI	GCATC	1 cut(s)	189
SinI	GGWCC	1 cut(s)	204
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	2 cut(s)	89, 241
SspI	AATATT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	222
TaqI	TCGA	1 cut(s)	166
TasI	AATT	2 cut(s)	89, 241
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	1 cut(s)	138
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	1 cut(s)	237
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.