Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8283097.1

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 847

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8283097.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 371 bp

taacagaagcggaggagttggagaagtttatcgccattcgagaagagatgtataaaaaagctaaagagttcgattctaagataattaattttgaaacagctattaggaggccttactttcacgtgaggccccttaacgctgcagagcttgaaaattggaacaactatcttgactttattgaaagggaaggtgactttaacaaggtggtcaagttatatgaaagatgcctgattgcttgcgctaattatcctgaatactggattcgttatgtcctaagtatggaagctagtggaagtttggatcttgccaataatgctcttgatcgtgctacccaggtctttgtgaaggtaataccttgtagtttgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

14.41

Weight (kDa)

5.11

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	308
AcvI	CACGTG	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	94, 151, 181
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	4 cut(s)	61, 100, 147, 286
AluI	AGCT	4 cut(s)	61, 100, 147, 286
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	109, 127
ApeKI	GCWGC	1 cut(s)	139
AseI	ATTAAT	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	202
BbrPI	CACGTG	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	334
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	2 cut(s)	111, 129
BslI	CCNNNNNNNGG	1 cut(s)	279
BsnI	GGCC	2 cut(s)	111, 129
Bsp143I	GATC	2 cut(s)	300, 321
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	111, 129
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	2 cut(s)	300, 321
Bst2UI	CCWGG	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	77, 274
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	2 cut(s)	303, 324
BstMBI	GATC	2 cut(s)	300, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	332
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	111, 129
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	128
CviJI	RGCY	6 cut(s)	61, 100, 111, 129, 147, 286
CviKI_1	RGCY	6 cut(s)	61, 100, 111, 129, 147, 286
DdeI	CTNAG	2 cut(s)	77, 274
DpnI	GATC	2 cut(s)	302, 323
DpnII	GATC	2 cut(s)	300, 321
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	111
Eco72I	CACGTG	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	332
FaiI	YATR	5 cut(s)	53, 216, 218, 269, 280
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	111, 129
HhaI	GCGC	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	2 cut(s)	73, 261
HphI	GGTGA	1 cut(s)	202
Hpy188III	TCNNGA	4 cut(s)	40, 169, 250, 319
HpyAV	CCTTC	2 cut(s)	181, 339
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	2 cut(s)	77, 274
HpySE526I	ACGT	1 cut(s)	122
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	300, 321
LpnPI	CCDG	5 cut(s)	241, 243, 263, 319, 346
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	302, 323
MboI	GATC	2 cut(s)	300, 321
MboII	GAAGA	1 cut(s)	55
MflI	RGATCY	1 cut(s)	300
MluCI	AATT	4 cut(s)	83, 87, 153, 243
MnlI	CCTC	3 cut(s)	6, 101, 119
MseI	TTAA	3 cut(s)	86, 134, 197
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	2 cut(s)	300, 321
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	73, 261
PkrI	GCNGC	1 cut(s)	141
PmaCI	CACGTG	1 cut(s)	123
PmlI	CACGTG	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	123
PshBI	ATTAAT	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	332
PspCI	CACGTG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	86, 134, 197
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	2 cut(s)	300, 321
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	334
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	140
Sse9I	AATT	4 cut(s)	83, 87, 153, 243
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	332
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	39, 71
TasI	AATT	4 cut(s)	83, 87, 153, 243
TfiI	GAWTC	2 cut(s)	73, 261
Tru1I	TTAA	3 cut(s)	86, 134, 197
Tru9I	TTAA	3 cut(s)	86, 134, 197
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	86
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.