Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Reverse (-)

38508504 .. 38508965

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG204700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCAGGATAACATCTTAAAAATTCAAAAAGTTTATGATGCTTTTCTAGCAGAGTTTCCTTTGTGTCATGGGTATTGGAAAAAGTATGCAGATCATGAGGCACGTTTTGGTGTTATTGATAAAGTTGTGGAGGTTTATGAACGAGCAGGTCAAGCTGTTACCTATTCAGTTGACATTTGGTTGCATTACTGCACATTTGCCACAACTACTTTTGGAGATCCAGACACTATCAGAAGTATGATTGCAACAGTGGTTCCTCACATATATGACGGAAAGGTTTGGTGGGAATACACTTTAGAAATGTTTTCTGATGTGCAATCCCTACGTTTTGAGGCTACTGTTCGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.6

Weight (kDa)

5.22

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	2 - 80	3.8e-28	PRP39 N-terminal HAT repeat
Suf	PF05843	2 - 66	4e-06	Suppressor of forked protein (Suf)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	21
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	255
BmsI	GCATC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	91, 217
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	212
BssMI	GATC	2 cut(s)	91, 217
Bst4CI	ACNGT	2 cut(s)	250, 340
BstKTI	GATC	2 cut(s)	94, 220
BstMBI	GATC	2 cut(s)	91, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 152
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	137
CciI	TCATGA	1 cut(s)	94
CviAII	CATG	2 cut(s)	68, 95
CviJI	RGCY	2 cut(s)	155, 335
CviKI_1	RGCY	2 cut(s)	155, 335
DpnI	GATC	2 cut(s)	93, 219
DpnII	GATC	2 cut(s)	91, 217
FaeI	CATG	2 cut(s)	71, 98
FaiI	YATR	9 cut(s)	36, 69, 87, 96, 138, 239, 263, 265, 267
FatI	CATG	2 cut(s)	67, 94
FspBI	CTAG	1 cut(s)	47
Hin1II	CATG	2 cut(s)	71, 98
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	233, 310
Hpy188III	TCNNGA	2 cut(s)	95, 221
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	250, 340
HpyCH4IV	ACGT	2 cut(s)	103, 325
HpyCH4V	TGCA	6 cut(s)	4, 89, 184, 192, 245, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 152
HpySE526I	ACGT	2 cut(s)	103, 325
Hsp92II	CATG	2 cut(s)	71, 98
Kzo9I	GATC	2 cut(s)	91, 217
LpnPI	CCDG	2 cut(s)	132, 234
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	2 cut(s)	103, 325
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	93, 219
MboI	GATC	2 cut(s)	91, 217
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	4 cut(s)	91, 124, 267, 325
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	47, 152
NdeII	GATC	2 cut(s)	91, 217
NlaIII	CATG	2 cut(s)	71, 98
NlaIV	GGNNCC	1 cut(s)	255
PagI	TCATGA	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	17
Sau3AI	GATC	2 cut(s)	91, 217
SetI	ASST	7 cut(s)	106, 135, 151, 157, 164, 279, 328
SfaNI	GCATC	1 cut(s)	28
SgeI	CNNG	9 cut(s)	17, 59, 80, 107, 114, 155, 159, 164, 233
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	250, 340
TaiI	ACGT	2 cut(s)	106, 328
TasI	AATT	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	255
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	21
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.