Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Reverse (-)

16431636 .. 16432060

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007391

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTTTCAGGCTTTTTGAGCAAGGATTGGCGTATGTTGGAACAGATTACTTGTCCTTTCCTCTTTGGGACAGGTACATTGATTATGAATTTATGCAGCAAGCGTGGGGCCAGCTTGTTGTGATCTACTCACGAATATTAGAGAATCCGAACCAACAACTGGATCGATATTTAAACAGTTTTAAGGAGTTAGCTGGAAGTCGGCCTCTCTCAGAATTGAGAACTGCTGAAGAAGCTGCTACAGCAGTAGCAAGTGCCACTTTAGAGGATGGTATACAAGCAAACGGGGTCAGTTTGAAATCAGAAATTGAAGCAGAAAATCTACAGAACTATTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.92

Weight (kDa)

4.34

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	4 - 63	1.1e-15	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	274
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	298, 311
AluBI	AGCT	3 cut(s)	115, 194, 236
AluI	AGCT	3 cut(s)	115, 194, 236
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	2 cut(s)	109, 203
ApeKI	GCWGC	2 cut(s)	97, 236
ApoI	RAATTY	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	109, 223
BccI	CCATC	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	240, 323
BisI	GCNGC	2 cut(s)	98, 237
BlsI	GCNGC	2 cut(s)	99, 238
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	110
Bsa29I	ATCGAT	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	166
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	109, 223
BshFI	GGCC	2 cut(s)	111, 205
BshVI	ATCGAT	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	111, 205
Bsp143I	GATC	2 cut(s)	123, 163
BspANI	GGCC	2 cut(s)	111, 205
BspCNI	CTCAG	1 cut(s)	224
BspDI	ATCGAT	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	123, 163
BssNAI	GTATAC	1 cut(s)	275
Bst1107I	GTATAC	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	102, 113
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	2 cut(s)	126, 166
BstMBI	GATC	2 cut(s)	123, 163
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 233, 242
BstSFI	CTRYAG	2 cut(s)	240, 323
BstV1I	GCAGC	2 cut(s)	109, 223
BstZ17I	GTATAC	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	111, 205
BsuTUI	ATCGAT	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	102, 113
Cfr13I	GGNCC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	76
CviJI	RGCY	7 cut(s)	5, 13, 111, 115, 194, 205, 236
CviKI_1	RGCY	7 cut(s)	5, 13, 111, 115, 194, 205, 236
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	2 cut(s)	125, 165
DpnII	GATC	2 cut(s)	123, 163
DraI	TTTAAA	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	249
FaiI	YATR	4 cut(s)	36, 87, 95, 275
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	1 cut(s)	83
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	98, 237
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	2 cut(s)	98, 237
GluI	GCNGC	2 cut(s)	98, 237
HaeIII	GGCC	2 cut(s)	111, 205
HinfI	GANTC	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	3 cut(s)	150, 214, 304
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 233, 242
HpyF3I	CTNAG	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	123, 163
LpnPI	CCDG	4 cut(s)	58, 125, 146, 180
Lsp1109I	GCAGC	2 cut(s)	109, 223
MalI	GATC	2 cut(s)	125, 165
MboI	GATC	2 cut(s)	123, 163
MboII	GAAGA	1 cut(s)	242
MluCI	AATT	3 cut(s)	89, 215, 306
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	3 cut(s)	72, 216, 259
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	2 cut(s)	173, 183
MwoI	GCNNNNNNNGC	3 cut(s)	19, 233, 242
NdeII	GATC	2 cut(s)	123, 163
NlaIV	GGNNCC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	99, 238
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	173, 183
SatI	GCNGC	2 cut(s)	98, 237
Sau3AI	GATC	2 cut(s)	123, 163
Sau96I	GGNCC	1 cut(s)	109
SetI	ASST	4 cut(s)	77, 117, 196, 238
SfcI	CTRYAG	2 cut(s)	240, 323
Sse9I	AATT	3 cut(s)	89, 215, 306
SspI	AATATT	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	166
TasI	AATT	3 cut(s)	89, 215, 306
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	173, 183
Tru9I	TTAA	2 cut(s)	173, 183
TseI	GCWGC	2 cut(s)	97, 236
TspDTI	ATGAA	2 cut(s)	102, 325
Van91I	CCANNNNNTGG	1 cut(s)	160
XapI	RAATTY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.