Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Forward (+)

19772974 .. 19779761

Gene Structure 6788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGGGAGACAGTGAGACTGTCATTGCTCAAACAAATGCAATGATGGGATATTCATCAGCAGCCTATACTACGACAGGTTATTCTGATTCCAGCTCAAATATTGCTGAGGAGGCTACCACAGAAATTTCTGCTCCTCCTGCTCCTGTAGATGCAACCCATCCAATGCCTGGTGATGGAAATGCATATTCTGTGGCTTCCGATTCTCTCATGCAAGAATCACATTCTTATGCAACATATGAGGCTCAACCAGCTGTTGGTGTTACTGATGCTGGTGGGAATGTTGCTAGCGGTGAACATGAAAACATGGCATCATCGCAAGCTGCCAGTTATGATTCTACTGCTAATGGTGTTGCTACTTCTGGGGTGGGAACTGTTTCATCTGTTGGAAATGGAGATGCTTCAGACAACATGGCTGGATCTCTGGATACACAACAATATGTGGATGGTTCTGCTTTGTCTGCCGAAGAAGATAGACTATGGAACATTGTGAGGGCTAATTCTTTAGATTTTAATGCCTGGACTGCTTTAATTGAAGAGACAGAGAAGGTTTCAGAGGATAACATATTAAAAATTCGAAAAGTTTATGATGCTTTTCTAGCAGAGTTTCCTTTGTGTTATGGGTATTGGAAAAAGTATGCAGATCATGAGGCACGTTTTGGTGTTATTGATAAAGTTGTGGAGGTTTATGAACGAGCAGTTCAAGCTGTTACCTATTCAGTTGACATTTGGTTGCATTACTGCACATTTGCCACAACTACTTTTGGAGATCCAGACTCTATCAGAAGGCTTTTTGAGCGAGGATTAGCGTATGTTGGAACAGATTACTTGTCCTTTCCTCTTTGGGACAGGTACATTGATTATGAATTTATGCAGCAAGCATGGGGCCAGCTTGTTGTGATCTACTCACGAATATTAGAGAATCCGAACCAACAACTGGATCGATATTTAAACAGTTTTAAGGAGTTAGCTGGAAGTCGGCCTCTCTCAGAATTGAGAACTGCTGAAGAAGCTGCTGCTGCTGCAGCAGCAGCAAGTGCCACTTCAGAGGATGGTGTACAAGCAAACGGGGAAGATGCTCAACCTGATGGTGCAGAACCATCTCCTGCTATCTTAACAGAAGCGGAGGAGTTGGAGAAGTTTATCGCCATTCGAGAAGAGATGTATAAAAAAGCTAAAGAGTTCGATTCTAAGATAATTAATTTTGAAACAGCTATTAGGAGGCCTTACTTTCACGTGAGGCCCCTTAACGCTGCAGAGCTTGAAAATTGGAACAACTATCTTGACTTTATTGAAAGGGAAGGTGACTTTAACAAGGTGGTCAAGTTATATGAAAGATGCCTGATTGCTTGCGCTAATTATCCTGAATATTGGATTCGTTATGTCCTAAGTATGGAAGCTAGTGGAAGTGTGGATCTTGCCAATAATGCTCTTGATCGTGCAACCCAGGTCTTTGTGAAGAGACAACCAGAGATTCACCTTTTTGCTGCTCGCTTCAAAGAGCAAAGTGGAGATATCCCTGGTGCTCAGGCTGCCTATCAACTCGTACATTCTGAAATTTCACCTGGTCTTCTTGAAGCAATCATTAAGCATGCAAACATGGAACACCGTCTGGGAAATATGGAAGCTGCCTACTCCTTGTTTGAACAGGCCATTGCCATTGAAAAAGGAAAGGAGCATTCTCAGACCTTACCCGTGCTGTTTGCTCAATATGCACGGTTCGCGCACTTGGTATCTTTGAATGCTGAAAAAGCCAGGGCTATCTTTCTTGAAGCGGTCGAGCATGTTCAATTGTCAAAAGCATTTCTCGAGGCCCTGATACATTTCGAGTCGATACATTCGTTGCCAAAGCAAATTGATTACATAGATTCCTTGGTTGTGAAGTTCGTAGAGTCCAACTCAGAGAACCCCAATTTTGCGAGTGTTGCTGACAGAGAGGAGTTATCTTGCATCTATTTGGAGTTTCTAAATCTCTTTGGGGATGCACAGTCTATCAAGAAGGCTGAGGATCGGCATGCTAAGCTCTTTTTACTTCATAGGAGCACCACTTCAGAGTTGAAAAAACGGCAAGCTGAAGATTACCTATCTTCTGATAAAGCAAAGATGGCAAAATCCTACTCTGGTGTTCCTTCACCTGCCCAGTCCATTATGGGAGCATATCCAAATGCACAAAACCAGTGGGCGGCTGGTTATGGTGTGCAACCTCAAGCTTGGCCACCAGCTACACAAGCACAGGGACAACAATGGGCCCCTGGTTATACCCAACAGGCATACAATGCATATGGTGGTTATCAGCAAGTACCTGCCGCAGTGCCACAGACTGCTGCTTATCCTGCTACATATCCCGCCACATATCCTGCTCAGCCGGCGGCTTCCTACCCACAAAGCTATGCACAGCCAGGAGCCGCAGCTACTGCAGTAGCAGCTGTAGCACCAGCTCAGCAACCTGCTCCGGCTCAACAGGCGTATTATGGGAATTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

829

Amino Acids

91.11

Weight (kDa)

4.76

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	157 - 321	9.8e-61	PRP39 N-terminal HAT repeat
Suf	PF05843	158 - 288	1.7e-13	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N	PF23233	165 - 306	9.8e-08	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	209 - 270	3.1e-06	PRP39 C-terminal HAT repeat
Suf	PF05843	378 - 598	2.1e-08	Suppressor of forked protein (Suf)
HAT_PRP39_C	PF23241	397 - 536	3.1e-48	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2140
Acc36I	ACCTGC	3 cut(s)	2140, 2308, 2452
AccB7I	CCANNNNNTGG	3 cut(s)	167, 254, 934
AccII	CGCG	1 cut(s)	1721
AciI	CCGC	8 cut(s)	288, 1121, 1772, 2180, 2304, 2343, 2366, 2403
AclWI	GGATC	5 cut(s)	424, 761, 945, 1419, 2013
AcoI	YGGCCR	1 cut(s)	2210
AcsI	RAATTY	4 cut(s)	123, 570, 863, 1554
AcuI	CTGAAG	5 cut(s)	384, 1023, 1026, 2031, 2091
AcvI	CACGTG	1 cut(s)	1234
AfaI	GTAC	4 cut(s)	851, 1056, 1545, 2298
AfiI	CCNNNNNNNGG	6 cut(s)	167, 173, 254, 934, 1390, 2179
AjnI	CCWGG	8 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248, 2395
Alw21I	GWGCWC	2 cut(s)	1525, 2042
Alw26I	GTCTC	3 cut(s)	8, 530, 1453
AlwI	GGATC	5 cut(s)	424, 761, 945, 1419, 2013
AlwNI	CAGNNNCTG	1 cut(s)	2411
Ama87I	CYCGRG	1 cut(s)	1805
AoxI	GGCC	8 cut(s)	883, 977, 1220, 1238, 1647, 1809, 2210, 2244
ApaI	GGGCCC	1 cut(s)	2248
ApoI	RAATTY	4 cut(s)	123, 570, 863, 1554
AseI	ATTAAT	1 cut(s)	1197
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	1352, 1723
AspS9I	GGNCC	5 cut(s)	883, 1239, 1810, 2244, 2245
AsuHPI	GGTGA	6 cut(s)	182, 302, 1313, 1466, 1551, 2121
AsuII	TTCGAA	1 cut(s)	574
AsuNHI	GCTAGC	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	1805
BaeGI	GKGCMC	1 cut(s)	2248
BaeI	ACNNNNGTAYC	2 cut(s)	1823, 1856
BalI	TGGCCA	1 cut(s)	2212
BanII	GRGCYC	1 cut(s)	2248
BbrPI	CACGTG	1 cut(s)	1234
BbsI	GAAGAC	1 cut(s)	1559
Bbv12I	GWGCWC	2 cut(s)	1525, 2042
BbvCI	CCTCAGC	2 cut(s)	105, 2001
BccI	CCATC	8 cut(s)	37, 165, 167, 437, 1043, 1079, 1105, 2095
BceAI	ACGGC	1 cut(s)	2078
BciT130I	CCWGG	8 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250, 2397
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	8, 530, 1453
BfaI	CTAG	3 cut(s)	285, 596, 1398
BfmI	CTRYAG	5 cut(s)	144, 1020, 1251, 2412, 2424
BfuAI	ACCTGC	3 cut(s)	2140, 2308, 2452
BfuI	GTATCC	1 cut(s)	418
BlpI	GCTNAGC	3 cut(s)	2016, 2358, 2436
Bme1390I	CCNGG	8 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250, 2397
BmeT110I	CYCGRG	1 cut(s)	1805
BmgT120I	GGNCC	5 cut(s)	883, 1239, 1810, 2244, 2245
BmiI	GGNNCC	5 cut(s)	884, 1241, 2246, 2247, 2401
BmrFI	CCNGG	8 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250, 2397
BmrI	ACTGGG	1 cut(s)	2131
BmsI	GCATC	9 cut(s)	139, 256, 317, 385, 577, 1063, 1325, 1956, 1969
BmtI	GCTAGC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	2131
BpiI	GAAGAC	1 cut(s)	1559
BplI	GAGNNNNNCTC	2 cut(s)	1880, 1912
Bpu10I	CCTNAGC	3 cut(s)	105, 1524, 2001
Bpu1102I	GCTNAGC	3 cut(s)	2016, 2358, 2436
Bpu14I	TTCGAA	1 cut(s)	574
BpuEI	CTTGAG	1 cut(s)	2187
Bsa29I	ATCGAT	1 cut(s)	940
BsaAI	YACGTR	1 cut(s)	1234
BsaBI	GATNNNNATC	1 cut(s)	52
BsaJI	CCNNGG	5 cut(s)	1443, 1516, 1752, 1869, 2248
Bsc4I	CCNNNNNNNGG	6 cut(s)	167, 173, 254, 934, 1390, 2179
Bse118I	RCCGGY	1 cut(s)	2362
Bse1I	ACTGG	5 cut(s)	324, 939, 2137, 2173, 2482
Bse3DI	GCAATG	3 cut(s)	21, 45, 1650
Bse8I	GATNNNNATC	1 cut(s)	52
BseBI	CCWGG	8 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250, 2397
BseCI	ATCGAT	1 cut(s)	940
BseDI	CCNNGG	5 cut(s)	1443, 1516, 1752, 1869, 2248
BseGI	GGATG	4 cut(s)	157, 448, 1054, 1984
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	6 cut(s)	167, 173, 254, 934, 1390, 2179
BseMI	GCAATG	3 cut(s)	21, 45, 1650
BseMII	CTCAG	8 cut(s)	96, 999, 1538, 1694, 1911, 1992, 2372, 2450
BseNI	ACTGG	5 cut(s)	324, 939, 2137, 2173, 2482
BseRI	GAGGAG	4 cut(s)	122, 123, 1139, 1949
BseSI	GKGCMC	1 cut(s)	2248
BsgI	GTGCAG	2 cut(s)	724, 1110
Bsh1236I	CGCG	1 cut(s)	1721
Bsh1285I	CGRYCG	1 cut(s)	1776
BshFI	GGCC	8 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212, 2246
BshVI	ATCGAT	1 cut(s)	940
BsiEI	CGRYCG	1 cut(s)	1776
BsiHKAI	GWGCWC	2 cut(s)	1525, 2042
BsiHKCI	CYCGRG	1 cut(s)	1805
BsiSI	CCGG	2 cut(s)	2363, 2450
BslFI	GGGAC	2 cut(s)	857, 2247
BslI	CCNNNNNNNGG	6 cut(s)	167, 173, 254, 934, 1390, 2179
BsmAI	GTCTC	3 cut(s)	8, 530, 1453
BsmFI	GGGAC	2 cut(s)	857, 2247
BsmI	GAATGC	2 cut(s)	1675, 1744
BsnI	GGCC	8 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212, 2246
BsoBI	CYCGRG	1 cut(s)	1805
Bsp119I	TTCGAA	1 cut(s)	574
Bsp120I	GGGCCC	1 cut(s)	2244
Bsp1286I	GDGCHC	3 cut(s)	1525, 2042, 2248
Bsp1407I	TGTACA	1 cut(s)	1054
Bsp143I	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
Bsp1720I	GCTNAGC	3 cut(s)	2016, 2358, 2436
BspACI	CCGC	8 cut(s)	288, 1121, 1772, 2180, 2304, 2343, 2366, 2403
BspANI	GGCC	8 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212, 2246
BspCNI	CTCAG	8 cut(s)	97, 998, 1537, 1693, 1910, 1993, 2371, 2449
BspDI	ATCGAT	1 cut(s)	940
BspFNI	CGCG	1 cut(s)	1721
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	5 cut(s)	884, 1241, 2246, 2247, 2401
BspMAI	CTGCAG	3 cut(s)	1024, 1255, 2416
BspMI	ACCTGC	3 cut(s)	2140, 2308, 2452
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	5 cut(s)	424, 761, 945, 1419, 2013
BspT104I	TTCGAA	1 cut(s)	574
BsrDI	GCAATG	3 cut(s)	21, 45, 1650
BsrFI	RCCGGY	1 cut(s)	2362
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	5 cut(s)	324, 939, 2137, 2173, 2482
BssAI	RCCGGY	1 cut(s)	2362
BssECI	CCNNGG	5 cut(s)	1443, 1516, 1752, 1869, 2248
BssMI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
BssT1I	CCWWGG	1 cut(s)	1869
Bst2UI	CCWGG	8 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250, 2397
Bst4CI	ACNGT	7 cut(s)	11, 19, 373, 953, 1607, 1716, 1986
Bst6I	CTCTTC	3 cut(s)	528, 1149, 1451
BstAPI	GCANNNNNTGC	3 cut(s)	1034, 2273, 2411
BstAUI	TGTACA	1 cut(s)	1054
BstBAI	YACGTR	1 cut(s)	1234
BstBI	TTCGAA	1 cut(s)	574
BstF5I	GGATG	4 cut(s)	157, 448, 1054, 1984
BstFNI	CGCG	1 cut(s)	1721
BstHHI	GCGC	2 cut(s)	1352, 1723
BstKTI	GATC	8 cut(s)	419, 643, 769, 900, 940, 1414, 1435, 2008
BstMAI	GTCTC	3 cut(s)	8, 530, 1453
BstMBI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
BstMCI	CGRYCG	1 cut(s)	1776
BstNI	CCWGG	8 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250, 2397
BstNSI	RCATGY	3 cut(s)	1592, 1784, 2015
BstSCI	CCNGG	8 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248, 2395
BstSFI	CTRYAG	5 cut(s)	144, 1020, 1251, 2412, 2424
BstSLI	GKGCMC	1 cut(s)	2248
BstUI	CGCG	1 cut(s)	1721
BstV2I	GAAGAC	1 cut(s)	1559
BstX2I	RGATCY	3 cut(s)	416, 766, 1411
BstYI	RGATCY	3 cut(s)	416, 766, 1411
Bsu15I	ATCGAT	1 cut(s)	940
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	8 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212, 2246
BsuTUI	ATCGAT	1 cut(s)	940
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	157, 448, 1054, 1984
BtsI	GCAGTG	1 cut(s)	2313
BtsIMutI	CAGTG	3 cut(s)	16, 2180, 2313
BveI	ACCTGC	3 cut(s)	2140, 2308, 2452
CaiI	CAGNNNCTG	1 cut(s)	2411
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	2 cut(s)	1352, 1723
Cfr10I	RCCGGY	1 cut(s)	2362
Cfr13I	GGNCC	5 cut(s)	883, 1239, 1810, 2244, 2245
ClaI	ATCGAT	1 cut(s)	940
CsiI	ACCWGGT	1 cut(s)	1561
Csp6I	GTAC	4 cut(s)	850, 1055, 1544, 2297
CspCI	CAANNNNNGTGG	2 cut(s)	2156, 2191
CviQI	GTAC	4 cut(s)	850, 1055, 1544, 2297
DpnI	GATC	8 cut(s)	418, 642, 768, 899, 939, 1413, 1434, 2007
DpnII	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	1 cut(s)	2210
Eam1104I	CTCTTC	3 cut(s)	528, 1149, 1451
EarI	CTCTTC	3 cut(s)	528, 1149, 1451
Eco130I	CCWWGG	1 cut(s)	1869
Eco147I	AGGCCT	1 cut(s)	1222
Eco24I	GRGCYC	1 cut(s)	2248
Eco32I	GATATC	1 cut(s)	1513
Eco57I	CTGAAG	5 cut(s)	384, 1023, 1026, 2031, 2091
Eco72I	CACGTG	1 cut(s)	1234
Eco88I	CYCGRG	1 cut(s)	1805
EcoO109I	RGGNCCY	3 cut(s)	1239, 1810, 2245
EcoRII	CCWGG	8 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248, 2395
EcoRV	GATATC	1 cut(s)	1513
EcoT14I	CCWWGG	1 cut(s)	1869
EcoT22I	ATGCAT	2 cut(s)	184, 2278
EcoT38I	GRGCYC	1 cut(s)	2248
ErhI	CCWWGG	1 cut(s)	1869
FalI	AAGNNNNNCTT	2 cut(s)	1024, 1056
FaqI	GGGAC	2 cut(s)	857, 2247
FauI	CCCGC	1 cut(s)	2350
FauNDI	CATATG	2 cut(s)	235, 2278
FokI	GGATG	4 cut(s)	144, 455, 1061, 1991
FriOI	GRGCYC	1 cut(s)	2248
FspBI	CTAG	3 cut(s)	285, 596, 1398
GlaI	GCGC	2 cut(s)	1351, 1722
HaeIII	GGCC	8 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212, 2246
HapII	CCGG	2 cut(s)	2363, 2450
HhaI	GCGC	2 cut(s)	1352, 1723
Hin6I	GCGC	2 cut(s)	1350, 1721
HinP1I	GCGC	2 cut(s)	1350, 1721
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	2205
HpaII	CCGG	2 cut(s)	2363, 2450
HphI	GGTGA	6 cut(s)	182, 302, 1313, 1466, 1551, 2121
Hpy166II	GTNNAC	3 cut(s)	293, 721, 1055
Hpy8I	GTNNAC	3 cut(s)	293, 721, 1055
HpyAV	CCTTC	5 cut(s)	538, 777, 1292, 1990, 2136
HpyCH4III	ACNGT	7 cut(s)	11, 19, 373, 953, 1607, 1716, 1986
HpyCH4IV	ACGT	2 cut(s)	652, 1233
HpySE526I	ACGT	2 cut(s)	652, 1233
HspAI	GCGC	2 cut(s)	1350, 1721
KroI	GCCGGC	1 cut(s)	2362
KroNI	GCCGGC	1 cut(s)	2364
Kzo9I	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
LmnI	GCTCC	7 cut(s)	136, 145, 1672, 2037, 2150, 2399, 2452
LweI	GCATC	9 cut(s)	139, 256, 317, 385, 577, 1063, 1325, 1956, 1969
MabI	ACCWGGT	1 cut(s)	1561
MaeI	CTAG	3 cut(s)	285, 596, 1398
MaeII	ACGT	2 cut(s)	652, 1233
MaeIII	GTNAC	3 cut(s)	259, 706, 1301
MalI	GATC	8 cut(s)	418, 642, 768, 899, 939, 1413, 1434, 2007
MboI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
MfeI	CAATTG	1 cut(s)	1787
MflI	RGATCY	3 cut(s)	416, 766, 1411
MhlI	GDGCHC	3 cut(s)	1525, 2042, 2248
MlsI	TGGCCA	1 cut(s)	2212
MluNI	TGGCCA	1 cut(s)	2212
MlyI	GAGTC	3 cut(s)	767, 1835, 1898
MmeI	TCCRAC	4 cut(s)	364, 793, 1110, 1917
Mox20I	TGGCCA	1 cut(s)	2212
Mph1103I	ATGCAT	2 cut(s)	184, 2278
MroNI	GCCGGC	1 cut(s)	2362
MroXI	GAANNNNTTC	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	2212
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	2212
MspA1I	CMGCKG	2 cut(s)	251, 2423
MspI	CCGG	2 cut(s)	2363, 2450
MspR9I	CCNGG	8 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250, 2397
MunI	CAATTG	1 cut(s)	1787
Mva1269I	GAATGC	2 cut(s)	1675, 1744
MvaI	CCWGG	8 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250, 2397
MvnI	CGCG	1 cut(s)	1721
NaeI	GCCGGC	1 cut(s)	2364
NdeI	CATATG	2 cut(s)	235, 2278
NdeII	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
NgoMIV	GCCGGC	1 cut(s)	2362
NheI	GCTAGC	1 cut(s)	284
NlaIV	GGNNCC	5 cut(s)	884, 1241, 2246, 2247, 2401
NmuCI	GTSAC	1 cut(s)	1301
NsiI	ATGCAT	2 cut(s)	184, 2278
NspI	RCATGY	3 cut(s)	1592, 1784, 2015
NspV	TTCGAA	1 cut(s)	574
PaeI	GCATGC	2 cut(s)	1592, 2015
PaeR7I	CTCGAG	1 cut(s)	1805
PagI	TCATGA	1 cut(s)	643
PaqCI	CACCTGC	1 cut(s)	2140
PceI	AGGCCT	1 cut(s)	1222
PcsI	WCGNNNNNNNCGW	1 cut(s)	1835
PctI	GAATGC	2 cut(s)	1675, 1744
PdiI	GCCGGC	1 cut(s)	2364
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	9 cut(s)	86, 200, 215, 332, 919, 1184, 1372, 1471, 1865
PflMI	CCANNNNNTGG	3 cut(s)	167, 254, 934
PleI	GAGTC	3 cut(s)	767, 1834, 1897
PmaCI	CACGTG	1 cut(s)	1234
PmlI	CACGTG	1 cut(s)	1234
PpsI	GAGTC	3 cut(s)	767, 1834, 1897
Ppu21I	YACGTR	1 cut(s)	1234
PshBI	ATTAAT	1 cut(s)	1197
Psp6I	CCWGG	8 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248, 2395
PspCI	CACGTG	1 cut(s)	1234
PspGI	CCWGG	8 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248, 2395
PspN4I	GGNNCC	5 cut(s)	884, 1241, 2246, 2247, 2401
PspOMI	GGGCCC	1 cut(s)	2244
PspPI	GGNCC	5 cut(s)	883, 1239, 1810, 2244, 2245
PstI	CTGCAG	3 cut(s)	1024, 1255, 2416
PstNI	CAGNNNCTG	1 cut(s)	2411
PsuI	RGATCY	3 cut(s)	416, 766, 1411
PvuII	CAGCTG	2 cut(s)	251, 2423
RsaI	GTAC	4 cut(s)	851, 1056, 1545, 2298
RsaNI	GTAC	4 cut(s)	850, 1055, 1544, 2297
RseI	CAYNNNNRTG	1 cut(s)	225
Sau3AI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
Sau96I	GGNCC	5 cut(s)	883, 1239, 1810, 2244, 2245
SchI	GAGTC	3 cut(s)	767, 1835, 1898
ScrFI	CCNGG	8 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250, 2397
SduI	GDGCHC	3 cut(s)	1525, 2042, 2248
SexAI	ACCWGGT	1 cut(s)	1561
SfaNI	GCATC	9 cut(s)	139, 256, 317, 385, 577, 1063, 1325, 1956, 1969
SfcI	CTRYAG	5 cut(s)	144, 1020, 1251, 2412, 2424
Sfr274I	CTCGAG	1 cut(s)	1805
SfuI	TTCGAA	1 cut(s)	574
SlaI	CTCGAG	1 cut(s)	1805
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	1805, 2202
SmoI	CTYRAG	2 cut(s)	1805, 2202
SphI	GCATGC	2 cut(s)	1592, 2015
SseBI	AGGCCT	1 cut(s)	1222
SsiI	CCGC	8 cut(s)	288, 1121, 1772, 2180, 2304, 2343, 2366, 2403
SspI	AATATT	3 cut(s)	100, 912, 1367
SspMI	CTAG	3 cut(s)	285, 596, 1398
StuI	AGGCCT	1 cut(s)	1222
StyD4I	CCNGG	8 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248, 2395
StyI	CCWWGG	1 cut(s)	1869
TaaI	ACNGT	7 cut(s)	11, 19, 373, 953, 1607, 1716, 1986
TaiI	ACGT	2 cut(s)	655, 1236
TaqI	TCGA	8 cut(s)	574, 940, 1150, 1182, 1776, 1806, 1824, 1829
TatI	WGTACW	1 cut(s)	1054
TauI	GCSGC	4 cut(s)	2183, 2306, 2369, 2405
TfiI	GAWTC	9 cut(s)	86, 200, 215, 332, 919, 1184, 1372, 1471, 1865
TscAI	CASTG	3 cut(s)	16, 2180, 2313
TseFI	GTSAC	1 cut(s)	1301
Tsp45I	GTSAC	1 cut(s)	1301
TspDTI	ATGAA	7 cut(s)	42, 312, 366, 702, 876, 1344, 2021
TspRI	CASTG	3 cut(s)	16, 2180, 2313
Van91I	CCANNNNNTGG	3 cut(s)	167, 254, 934
VspI	ATTAAT	1 cut(s)	1197
XapI	RAATTY	4 cut(s)	123, 570, 863, 1554
XceI	RCATGY	3 cut(s)	1592, 1784, 2015
XcmI	CCANNNNNNNNNTGG	2 cut(s)	164, 2180
XhoI	CTCGAG	1 cut(s)	1805
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	3 cut(s)	285, 596, 1398
Zsp2I	ATGCAT	2 cut(s)	184, 2278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.