Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8332197.1

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 862

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8332197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

agacaaccagagattcacctttttgctgctcgcttcaaagagcaaagtggagatatccctggtgctcaggctgcttatcaactcgtacattctgaaatttcacctggtcttcttgaagcaatcattaagcatgcaaacatggaacaccgtctgggaaatatggaagctgcctactccttgtttgaacaggccattgccattgaaaaaggaaaggagcattctcagaccttacccgtgctgtttgctcaatacgcacggttcgcatacttggtaggttataagttatataataacctggcagcttggctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.62

Weight (kDa)

6.56

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	1 cut(s)	87
AgsI	TTSAA	4 cut(s)	37, 116, 185, 203
AjnI	CCWGG	3 cut(s)	58, 103, 294
AluBI	AGCT	2 cut(s)	167, 302
AluI	AGCT	2 cut(s)	167, 302
Alw21I	GWGCWC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	4 cut(s)	26, 71, 167, 299
ApoI	RAATTY	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	8, 93
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	13, 58, 154
BciT130I	CCWGG	3 cut(s)	60, 105, 296
BisI	GCNGC	4 cut(s)	27, 72, 168, 300
BlsI	GCNGC	4 cut(s)	28, 73, 169, 301
Bme1390I	CCNGG	3 cut(s)	60, 105, 296
BmrFI	CCNGG	3 cut(s)	60, 105, 296
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	3 cut(s)	60, 105, 296
BseDI	CCNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	80, 236
BseXI	GCAGC	3 cut(s)	13, 58, 154
BshFI	GGCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	79, 235
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	58
Bst2UI	CCWGG	3 cut(s)	60, 105, 296
Bst4CI	ACNGT	2 cut(s)	149, 258
BstC8I	GCNNGC	2 cut(s)	31, 132
BstDEI	CTNAG	2 cut(s)	66, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 251, 260
BstNI	CCWGG	3 cut(s)	60, 105, 296
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	58, 103, 294
BstV1I	GCAGC	3 cut(s)	13, 58, 154
BstV2I	GAAGAC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	31, 132
CsiI	ACCWGGT	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	131, 139
CviJI	RGCY	5 cut(s)	71, 167, 191, 302, 307
CviKI_1	RGCY	5 cut(s)	71, 167, 191, 302, 307
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	2 cut(s)	66, 222
Eco32I	GATATC	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	58, 103, 294
EcoRV	GATATC	1 cut(s)	55
FaeI	CATG	2 cut(s)	134, 142
FaiI	YATR	8 cut(s)	132, 140, 161, 265, 279, 286, 288, 310
FatI	CATG	2 cut(s)	130, 138
Fnu4HI	GCNGC	4 cut(s)	27, 72, 168, 300
Fsp4HI	GCNGC	4 cut(s)	27, 72, 168, 300
GluI	GCNGC	4 cut(s)	27, 72, 168, 300
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	134, 142
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	2 cut(s)	8, 93
Hpy188I	TCNGA	2 cut(s)	94, 225
Hpy188III	TCNNGA	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	149, 258
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 251, 260
HpyF3I	CTNAG	2 cut(s)	66, 222
Hsp92II	CATG	2 cut(s)	134, 142
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	3 cut(s)	13, 58, 154
MabI	ACCWGGT	1 cut(s)	103
MboII	GAAGA	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	1 cut(s)	96
MseI	TTAA	1 cut(s)	126
MspR9I	CCNGG	3 cut(s)	60, 105, 296
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	3 cut(s)	60, 105, 296
MwoI	GCNNNNNNNGC	3 cut(s)	71, 251, 260
NlaIII	CATG	2 cut(s)	134, 142
NspI	RCATGY	1 cut(s)	134
PaeI	GCATGC	1 cut(s)	134
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	4 cut(s)	28, 73, 169, 301
PsiI	TTATAA	1 cut(s)	279
Psp6I	CCWGG	3 cut(s)	58, 103, 294
PspGI	CCWGG	3 cut(s)	58, 103, 294
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	4 cut(s)	27, 72, 168, 300
ScrFI	CCNGG	3 cut(s)	60, 105, 296
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	7 cut(s)	21, 106, 169, 230, 277, 297, 304
SexAI	ACCWGGT	1 cut(s)	103
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	58, 103, 294
TaaI	ACNGT	2 cut(s)	149, 258
TasI	AATT	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	4 cut(s)	26, 71, 167, 299
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.