Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Reverse (-)

52770753 .. 52773215

Gene Structure 2463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG298200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGAGACAGTGAGACTGTTGTTGCTCAAACAAATGCAGTGATGGGATATTCATCAGCAGCCTATACTACGACAGGTTATTCTGATTCCAGCTCAAATATTGCTCAGGAGGCTACCACAGAAATTTCTGCTCCTCCTGCTCCTGTAGATGCAACCCATCCAATGCCTGGTGATGGAAATGCGTATTCTGTGGCTTCCGATTCTCTCATGCAAGAATCACATTCTTATGCAACATATGAGGCTCAACCAGCTGTTGGTGTTGCTGATGCTGGTGGGAATGTTGTTAGCAGTGAACATGAAACCATGGCATCATTGCAAGCTGCCAATTATGATTCTACTGCTAATGGTGTTGCTACTTCTGGGGTGGGAACTGTTTCATCTGTTGGAAATGGAGATGCTTTAGACAACATGGCTGGATCTCTGGATACACAACAATATGTGGATGGTTCTGCTATGTCTGCTGAAGAAGATAGACTATGGAACATTGTGAGGGCTAATTCTTTAGATTTTAATGCCTGGACTGCTTTAATTGAAGAGACAGAGAAGGTGGCAGAGGATAACATATTAAAAATTCGAAAAGTTTATGATGCTTTTCTAGCAGAGTTTCCTTTGTGTTATGGGTATTGGAAAAAGTATGCAGATCATGAGGCACGTTTTGGTGTTATTGATAAAGTTGTGGAGGTATATGAACGAGCAGTTCAAGCTGTTACCTATTCAGTTGACATTTGGTTGCATTACTGCACATTTGCCACAACAACTTTTGGAGATCCAGACACTATCAGAAGTGCATCATTATGCAAATTGCTGCTGGGAAGATCTCGTCCAGTTAAGGGCTTAGATGGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

30.07

Weight (kDa)

4.33

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	157 - 258	4.9e-40	PRP39 N-terminal HAT repeat
Suf	PF05843	158 - 249	5.4e-11	Suppressor of forked protein (Suf)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	167, 254
AclWI	GGATC	2 cut(s)	424, 761
AcsI	RAATTY	2 cut(s)	123, 570
AcuI	CTGAAG	1 cut(s)	483
AfiI	CCNNNNNNNGG	4 cut(s)	167, 173, 254, 830
AgsI	TTSAA	2 cut(s)	533, 701
AjnI	CCWGG	2 cut(s)	166, 515
AluBI	AGCT	4 cut(s)	93, 251, 320, 704
AluI	AGCT	4 cut(s)	93, 251, 320, 704
Alw26I	GTCTC	2 cut(s)	8, 530
AlwI	GGATC	2 cut(s)	424, 761
AoxI	GGCC	1 cut(s)	841
ApeKI	GCWGC	3 cut(s)	59, 320, 805
ApoI	RAATTY	2 cut(s)	123, 570
Asp700I	GAANNNNTTC	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	574
BbvI	GCAGC	3 cut(s)	71, 307, 792
BccI	CCATC	5 cut(s)	37, 165, 167, 437, 833
BciT130I	CCWGG	2 cut(s)	168, 517
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	8, 530
BfaI	CTAG	2 cut(s)	596, 847
BfmI	CTRYAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	418
BglII	AGATCT	1 cut(s)	815
BisI	GCNGC	3 cut(s)	60, 321, 806
BlsI	GCNGC	3 cut(s)	61, 322, 807
Bme1390I	CCNGG	2 cut(s)	168, 517
BmrFI	CCNGG	2 cut(s)	168, 517
BmsI	GCATC	6 cut(s)	139, 256, 317, 385, 577, 797
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	574
BsaBI	GATNNNNATC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 173, 254, 830
Bse1I	ACTGG	1 cut(s)	824
Bse3DI	GCAATG	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	168, 517
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	2 cut(s)	157, 448
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	4 cut(s)	167, 173, 254, 830
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	824
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	71, 307, 792
BseYI	CCCAGC	1 cut(s)	808
BsgI	GTGCAG	1 cut(s)	724
BshFI	GGCC	1 cut(s)	843
BslI	CCNNNNNNNGG	4 cut(s)	167, 173, 254, 830
BsmAI	GTCTC	2 cut(s)	8, 530
BsnI	GGCC	1 cut(s)	843
Bsp119I	TTCGAA	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	416, 640, 766, 815
Bsp19I	CCATGG	1 cut(s)	303
BspANI	GGCC	1 cut(s)	843
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	643
BspPI	GGATC	2 cut(s)	424, 761
BspT104I	TTCGAA	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	824
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	416, 640, 766, 815
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	168, 517
Bst4CI	ACNGT	3 cut(s)	11, 19, 373
Bst6I	CTCTTC	1 cut(s)	528
BstBI	TTCGAA	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	105, 835
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	157, 448
BstKTI	GATC	4 cut(s)	419, 643, 769, 818
BstMAI	GTCTC	2 cut(s)	8, 530
BstMBI	GATC	4 cut(s)	416, 640, 766, 815
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 137, 248, 458, 521, 596, 701, 840
BstNI	CCWGG	2 cut(s)	168, 517
BstSCI	CCNGG	2 cut(s)	166, 515
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	71, 307, 792
BstX2I	RGATCY	3 cut(s)	416, 766, 815
BstYI	RGATCY	3 cut(s)	416, 766, 815
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	843
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	157, 448
BtsI	GCAGTG	2 cut(s)	45, 295
BtsIMutI	CAGTG	3 cut(s)	16, 45, 295
Cac8I	GCNNGC	1 cut(s)	318
CciI	TCATGA	1 cut(s)	643
CviAII	CATG	5 cut(s)	208, 296, 304, 409, 644
DdeI	CTNAG	2 cut(s)	105, 835
DpnI	GATC	4 cut(s)	418, 642, 768, 817
DpnII	GATC	4 cut(s)	416, 640, 766, 815
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	483
EcoRII	CCWGG	2 cut(s)	166, 515
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	5 cut(s)	211, 299, 307, 412, 647
FatI	CATG	5 cut(s)	207, 295, 303, 408, 643
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	60, 321, 806
FokI	GGATG	2 cut(s)	144, 455
Fsp4HI	GCNGC	3 cut(s)	60, 321, 806
FspBI	CTAG	2 cut(s)	596, 847
GluI	GCNGC	3 cut(s)	60, 321, 806
GsaI	CCCAGC	1 cut(s)	812
HaeIII	GGCC	1 cut(s)	843
Hin1II	CATG	5 cut(s)	211, 299, 307, 412, 647
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	4 cut(s)	86, 200, 215, 332
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	293, 721
Hpy188I	TCNGA	3 cut(s)	85, 199, 782
Hpy188III	TCNNGA	4 cut(s)	107, 422, 644, 770
Hpy8I	GTNNAC	2 cut(s)	293, 721
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	3 cut(s)	11, 19, 373
HpyCH4IV	ACGT	1 cut(s)	652
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 137, 248, 458, 521, 596, 701, 840
HpyF3I	CTNAG	2 cut(s)	105, 835
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	5 cut(s)	211, 299, 307, 412, 647
Kzo9I	GATC	4 cut(s)	416, 640, 766, 815
LmnI	GCTCC	2 cut(s)	136, 145
Lsp1109I	GCAGC	3 cut(s)	71, 307, 792
LweI	GCATC	6 cut(s)	139, 256, 317, 385, 577, 797
MaeI	CTAG	2 cut(s)	596, 847
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	4 cut(s)	418, 642, 768, 817
MboI	GATC	4 cut(s)	416, 640, 766, 815
MboII	GAAGA	4 cut(s)	476, 479, 545, 825
MflI	RGATCY	3 cut(s)	416, 766, 815
MluCI	AATT	6 cut(s)	123, 325, 496, 528, 570, 800
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	7 cut(s)	103, 144, 232, 483, 547, 640, 673
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	4 cut(s)	510, 527, 566, 828
MslI	CAYNNNNRTG	2 cut(s)	225, 793
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	168, 517
MvaI	CCWGG	2 cut(s)	168, 517
MwoI	GCNNNNNNNGC	8 cut(s)	110, 137, 248, 458, 521, 596, 701, 840
NcoI	CCATGG	1 cut(s)	303
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	4 cut(s)	416, 640, 766, 815
NlaIII	CATG	5 cut(s)	211, 299, 307, 412, 647
NspV	TTCGAA	1 cut(s)	574
PagI	TCATGA	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	4 cut(s)	86, 200, 215, 332
PflMI	CCANNNNNTGG	2 cut(s)	167, 254
PkrI	GCNGC	3 cut(s)	61, 322, 807
Psp6I	CCWGG	2 cut(s)	166, 515
PspFI	CCCAGC	1 cut(s)	808
PspGI	CCWGG	2 cut(s)	166, 515
PsuI	RGATCY	3 cut(s)	416, 766, 815
PvuII	CAGCTG	1 cut(s)	251
RseI	CAYNNNNRTG	2 cut(s)	225, 793
SaqAI	TTAA	4 cut(s)	510, 527, 566, 828
SatI	GCNGC	3 cut(s)	60, 321, 806
Sau3AI	GATC	4 cut(s)	416, 640, 766, 815
ScrFI	CCNGG	2 cut(s)	168, 517
SetI	ASST	9 cut(s)	79, 95, 253, 322, 549, 655, 684, 706, 713
SfaNI	GCATC	6 cut(s)	139, 256, 317, 385, 577, 797
SfcI	CTRYAG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	225, 793
Sse9I	AATT	6 cut(s)	123, 325, 496, 528, 570, 800
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	2 cut(s)	596, 847
StyD4I	CCNGG	2 cut(s)	166, 515
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	11, 19, 373
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	1 cut(s)	574
TasI	AATT	6 cut(s)	123, 325, 496, 528, 570, 800
TfiI	GAWTC	4 cut(s)	86, 200, 215, 332
Tru1I	TTAA	4 cut(s)	510, 527, 566, 828
Tru9I	TTAA	4 cut(s)	510, 527, 566, 828
TscAI	CASTG	3 cut(s)	16, 45, 295
TseI	GCWGC	3 cut(s)	59, 320, 805
TspDTI	ATGAA	4 cut(s)	42, 312, 366, 702
TspRI	CASTG	3 cut(s)	16, 45, 295
Van91I	CCANNNNNTGG	2 cut(s)	167, 254
XapI	RAATTY	2 cut(s)	123, 570
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	2 cut(s)	596, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.