Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Reverse (-)

48845974 .. 48852452

Gene Structure 6479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGGGAGACAGTGAGACTGTTGTTGCTCAAACAAATGCAATGATGGGATATTCATCAGCAGCCTATACTACGACAGGTTATTCTGATTCCAGCTCAAATATTGCTCAGGAGGCTACCACAGAAATTTCTGCTCCTCCTGCTCCTGTAGATGCAACCCATCCAATGCCTGGTGATGGAAATGCATATTCTGTGGCTTCCGATTCTCTCATGCAAGAATCACATTCTTATGCAACATATGAGGCTCAACCAGCTGTTGGTGTTGCTGATGCTGGTGGGAATGTTGCTAACAGTGAACATGAAACCATGGCATCATTGCAAGCTGCCAATTATGATTCTACTGCTAATGGTGTTGCTACTTCTGGGGTGGGAACTGTTTCATCTGTTGGAAATGGAGATGCTTCAGACAACATGGCTGGATCTCTGGATACACAACAATATGTGGACTGTTCTGCTATGTCTGCCGAAGAAGATAGACTATGGAACATTGTTAGGGCTAATTCTTTAGATTTTAATGCCTGGACTGCTTTAATTGAAGAGACAGAGAAGGTTGCAGAGGATAACATATTAAAAATTCGAAAAGTTTATGATGCTTTTCTAGCAGAGTTTCCTTTGTGTTATGGGTATTGGAAAAAGTATGCAGATCATGAGGCGCGTTTTGGTGTTATTGATAAAGTTGTGGAGGTTTATGAGCGAGCAGTTCAAGCTGTTACCTATTCAGTTGACATTTGGTTGCATTACTGTACATTTGCCACAACTACTTTTGGAGATCCAGACACTATCAGAAGGCTTTTTGAGCGAGGATTAGCGTATGTTGGAACAGATTACTTGTCCTTTCCTCTTTGGGACAGGTACATTGATTATGAATTTATGCAGCAAGCATGGGGCCAGCTTGTTGTGATCTACTCACGAATATTAGAGAATCCGAACCAACAACTGGATCGATATTTAAACAGTTTTAAGGAGTTAGCTGGAAGTCGGCCTCTCTCAGAATTGAGAACTGCTGAAGAAGCTGCTGCTGCAGCAGCAGCAGCAAGTGCCACTTCAGAGGATGGTGTACAAGCAAACGGGGAAGATGCTCAACCTGATGGTGCAGAACCATCTCCTGCTATCTTAACAGAAGCGGAGGAGTTGGAGAAGTTTATCGCCATTCGAGAAGAGATGTATAAAAAAGCTAAAGAGTTCGATTCTAAGATAATTAATTTTGAAACAGCTATTAGGAGGCCTTACTTTCACGTGAGGCCTCTTAACGCTGCAGAGCTTGAAAATTGGAACAACTATCTTGACTTTATTGAAAGGGAAGGTGACTTTAACAAGGTGGTCAAGTTATATGAAAGATGCCTGATTGCTTGTGCTAATTATCCTGAATACTGGATTCGTTATGTCCTAAGTATGGAAGCTAGTGGAAGTTTGGATCTTGCCAATAATGCTCTTGATCGTGCAACCCAGGTCTTTGTGAAGAGACAACCAGAGATTCACCTTTTTGCTGCTCGCTTCAAAGAGCAAAGTGGAGATATCCCTGGTGCTCAGGCTGCCTATCAACTCGTACATTCTGAAATTTCACCTGGTCTTCTAGAAGCAATCATTAAGCATGCAAACATGGAACACCGTCTGGGAAATATGGAAGCTGCCTACTCCTTGTTTGAACAGGCCATTGCCATTGAAAAAGGAAAGGAGCATTCTCAGACCTTACCCGTGCTGTTTGCTCAATACGCACGGTTCGCATACTTGGTATCTTTGAATGCTGAAAAAGCCAGGGCTATCTTTCTTGAAGCGGTCGAGCATGTTCAATTGTCAAAAGCATTCCTCGAGGCCCTGATACATTTCGAGTCGATACATTCGTTGCCAAAGCAAATTGATTACATAGATTCCTTGGTTGTGAAGTTCGTGGAGTCCAACTCAGAGAACCCCAATTTTGCGAGTGTTGCTGACAGAGAGGAGTTATCTTGCATCTATTTGGAGTTTCTAAATCTCTTTGGGGATGCACAGTCTATCAAGAAGGCTGAGGATCGGCATGCTAAGCTCTTTTTACTTCATAGGAGCACCACTTCAGAATTGAAAAAACGGCAAGCTGAAGATTACCTATCTTCTGATAAAACAAAGATGGCAAAATCATACTCTGGTGTTCCTTCACCTGCCCAGTCTATTATGGGAGCATATCCAAATGCACAAAATCAGTGGGCAGCTGGTTATGGTGTGCAACCTCAAGCTTGGCCACCAGCTACACAAGCACAGGGACAACAATGGACCCCTGGTTATACCCAACAGGCATACAATGCATATGGTGGTTATCAGCAAGTACCTGCTGCAGTGCCACAGACTGCTGCTTATCCTGCTACATATCCCGCCACATATCCTGCTCAGATGTTTTGTGACAATGTTACAAGTAGGTCATTTATAAGTGGTGTCTCTATTGTTAGATTAGTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

809

Amino Acids

89.58

Weight (kDa)

4.78

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	157 - 321	9.4e-61	PRP39 N-terminal HAT repeat
Suf	PF05843	158 - 288	1.4e-13	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N	PF23233	165 - 306	9.9e-08	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	209 - 270	3e-06	PRP39 C-terminal HAT repeat
Suf	PF05843	378 - 598	1.7e-07	Suppressor of forked protein (Suf)
HAT_PRP39_C	PF23241	397 - 536	4.3e-48	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2396
AarI	CACCTGC	1 cut(s)	2140
AbsI	CCTCGAGG	1 cut(s)	1805
Acc36I	ACCTGC	2 cut(s)	2140, 2308
AccB7I	CCANNNNNTGG	3 cut(s)	167, 254, 934
AccII	CGCG	1 cut(s)	652
AciI	CCGC	3 cut(s)	1121, 1772, 2343
AclWI	GGATC	5 cut(s)	424, 761, 945, 1419, 2013
AcoI	YGGCCR	1 cut(s)	2210
AcsI	RAATTY	4 cut(s)	123, 570, 863, 1554
AcuI	CTGAAG	5 cut(s)	384, 1023, 1026, 2031, 2091
AcvI	CACGTG	1 cut(s)	1234
AfaI	GTAC	5 cut(s)	742, 851, 1056, 1545, 2298
AfiI	CCNNNNNNNGG	5 cut(s)	167, 173, 254, 934, 1390
AjnI	CCWGG	7 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248
Alw21I	GWGCWC	2 cut(s)	1525, 2042
Alw26I	GTCTC	4 cut(s)	8, 530, 1453, 2410
AlwI	GGATC	5 cut(s)	424, 761, 945, 1419, 2013
Ama87I	CYCGRG	1 cut(s)	1805
AoxI	GGCC	7 cut(s)	883, 977, 1220, 1238, 1647, 1809, 2210
ApoI	RAATTY	4 cut(s)	123, 570, 863, 1554
AseI	ATTAAT	1 cut(s)	1197
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	3 cut(s)	883, 1810, 2244
AsuHPI	GGTGA	5 cut(s)	182, 1313, 1466, 1551, 2121
AsuII	TTCGAA	1 cut(s)	574
AvaI	CYCGRG	1 cut(s)	1805
AvaII	GGWCC	1 cut(s)	2244
BaeI	ACNNNNGTAYC	2 cut(s)	1823, 1856
BalI	TGGCCA	1 cut(s)	2212
BbrPI	CACGTG	1 cut(s)	1234
BbsI	GAAGAC	1 cut(s)	1559
Bbv12I	GWGCWC	2 cut(s)	1525, 2042
BbvCI	CCTCAGC	1 cut(s)	2001
BccI	CCATC	7 cut(s)	37, 165, 167, 1043, 1079, 1105, 2095
BceAI	ACGGC	1 cut(s)	2078
BciT130I	CCWGG	7 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	4 cut(s)	8, 530, 1453, 2410
BfaI	CTAG	3 cut(s)	596, 1398, 1571
BfmI	CTRYAG	4 cut(s)	144, 1017, 1251, 2304
BfuAI	ACCTGC	2 cut(s)	2140, 2308
BfuI	GTATCC	1 cut(s)	418
BlpI	GCTNAGC	1 cut(s)	2016
Bme1390I	CCNGG	7 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250
Bme18I	GGWCC	1 cut(s)	2244
BmeT110I	CYCGRG	1 cut(s)	1805
BmgT120I	GGNCC	3 cut(s)	883, 1810, 2244
BmiI	GGNNCC	2 cut(s)	884, 2246
BmrFI	CCNGG	7 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250
BmrI	ACTGGG	1 cut(s)	2131
BmsI	GCATC	9 cut(s)	139, 256, 317, 385, 577, 1063, 1325, 1956, 1969
BmuI	ACTGGG	1 cut(s)	2131
BpiI	GAAGAC	1 cut(s)	1559
BplI	GAGNNNNNCTC	2 cut(s)	1880, 1912
Bpu10I	CCTNAGC	3 cut(s)	105, 1524, 2001
Bpu1102I	GCTNAGC	1 cut(s)	2016
Bpu14I	TTCGAA	1 cut(s)	574
BpuEI	CTTGAG	1 cut(s)	2187
Bsa29I	ATCGAT	1 cut(s)	940
BsaAI	YACGTR	1 cut(s)	1234
BsaBI	GATNNNNATC	1 cut(s)	52
BsaJI	CCNNGG	6 cut(s)	303, 1443, 1516, 1752, 1869, 2248
Bsc4I	CCNNNNNNNGG	5 cut(s)	167, 173, 254, 934, 1390
Bse1I	ACTGG	3 cut(s)	939, 1373, 2137
Bse3DI	GCAATG	3 cut(s)	45, 311, 1650
Bse8I	GATNNNNATC	1 cut(s)	52
BseBI	CCWGG	7 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250
BseCI	ATCGAT	1 cut(s)	940
BseDI	CCNNGG	6 cut(s)	303, 1443, 1516, 1752, 1869, 2248
BseGI	GGATG	3 cut(s)	157, 1054, 1984
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	5 cut(s)	167, 173, 254, 934, 1390
BseMI	GCAATG	3 cut(s)	45, 311, 1650
BseMII	CTCAG	7 cut(s)	119, 999, 1538, 1694, 1911, 1992, 2372
BseNI	ACTGG	3 cut(s)	939, 1373, 2137
BseRI	GAGGAG	3 cut(s)	123, 1139, 1949
BsgI	GTGCAG	1 cut(s)	1110
Bsh1236I	CGCG	1 cut(s)	652
Bsh1285I	CGRYCG	1 cut(s)	1776
BshFI	GGCC	7 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212
BshVI	ATCGAT	1 cut(s)	940
BsiEI	CGRYCG	1 cut(s)	1776
BsiHKAI	GWGCWC	2 cut(s)	1525, 2042
BsiHKCI	CYCGRG	1 cut(s)	1805
BslFI	GGGAC	2 cut(s)	857, 2247
BslI	CCNNNNNNNGG	5 cut(s)	167, 173, 254, 934, 1390
BsmAI	GTCTC	4 cut(s)	8, 530, 1453, 2410
BsmFI	GGGAC	2 cut(s)	857, 2247
BsmI	GAATGC	3 cut(s)	1675, 1744, 1799
BsnI	GGCC	7 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212
BsoBI	CYCGRG	1 cut(s)	1805
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1286I	GDGCHC	2 cut(s)	1525, 2042
Bsp1407I	TGTACA	2 cut(s)	740, 1054
Bsp143I	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
Bsp1720I	GCTNAGC	1 cut(s)	2016
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	3 cut(s)	1121, 1772, 2343
BspANI	GGCC	7 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212
BspCNI	CTCAG	7 cut(s)	118, 998, 1537, 1693, 1910, 1993, 2371
BspDI	ATCGAT	1 cut(s)	940
BspFNI	CGCG	1 cut(s)	652
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	884, 2246
BspMAI	CTGCAG	3 cut(s)	1021, 1255, 2308
BspMI	ACCTGC	2 cut(s)	2140, 2308
BspPI	GGATC	5 cut(s)	424, 761, 945, 1419, 2013
BspT104I	TTCGAA	1 cut(s)	574
BsrDI	GCAATG	3 cut(s)	45, 311, 1650
BsrGI	TGTACA	2 cut(s)	740, 1054
BsrI	ACTGG	3 cut(s)	939, 1373, 2137
BssECI	CCNNGG	6 cut(s)	303, 1443, 1516, 1752, 1869, 2248
BssMI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
BssT1I	CCWWGG	2 cut(s)	303, 1869
Bst2UI	CCWGG	7 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250
Bst6I	CTCTTC	3 cut(s)	528, 1149, 1451
BstAPI	GCANNNNNTGC	2 cut(s)	1034, 2273
BstAUI	TGTACA	2 cut(s)	740, 1054
BstBAI	YACGTR	1 cut(s)	1234
BstBI	TTCGAA	1 cut(s)	574
BstC8I	GCNNGC	8 cut(s)	318, 693, 876, 887, 1489, 1590, 2013, 2067
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	157, 1054, 1984
BstFNI	CGCG	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	8 cut(s)	419, 643, 769, 900, 940, 1414, 1435, 2008
BstMAI	GTCTC	4 cut(s)	8, 530, 1453, 2410
BstMBI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
BstMCI	CGRYCG	1 cut(s)	1776
BstNI	CCWGG	7 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250
BstNSI	RCATGY	3 cut(s)	1592, 1784, 2015
BstSCI	CCNGG	7 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248
BstSFI	CTRYAG	4 cut(s)	144, 1017, 1251, 2304
BstUI	CGCG	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	1559
BstX2I	RGATCY	3 cut(s)	416, 766, 1411
BstYI	RGATCY	3 cut(s)	416, 766, 1411
Bsu15I	ATCGAT	1 cut(s)	940
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	7 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212
BsuTUI	ATCGAT	1 cut(s)	940
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	157, 1054, 1984
BtsI	GCAGTG	1 cut(s)	2313
BtsIMutI	CAGTG	4 cut(s)	16, 295, 2180, 2313
BveI	ACCTGC	2 cut(s)	2140, 2308
Cac8I	GCNNGC	8 cut(s)	318, 693, 876, 887, 1489, 1590, 2013, 2067
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	3 cut(s)	883, 1810, 2244
ClaI	ATCGAT	1 cut(s)	940
CsiI	ACCWGGT	1 cut(s)	1561
Csp6I	GTAC	5 cut(s)	741, 850, 1055, 1544, 2297
CspCI	CAANNNNNGTGG	2 cut(s)	2156, 2191
CviQI	GTAC	5 cut(s)	741, 850, 1055, 1544, 2297
DpnI	GATC	8 cut(s)	418, 642, 768, 899, 939, 1413, 1434, 2007
DpnII	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	1 cut(s)	2210
Eam1104I	CTCTTC	3 cut(s)	528, 1149, 1451
EarI	CTCTTC	3 cut(s)	528, 1149, 1451
Eco130I	CCWWGG	2 cut(s)	303, 1869
Eco147I	AGGCCT	2 cut(s)	1222, 1240
Eco32I	GATATC	1 cut(s)	1513
Eco47I	GGWCC	1 cut(s)	2244
Eco57I	CTGAAG	5 cut(s)	384, 1023, 1026, 2031, 2091
Eco72I	CACGTG	1 cut(s)	1234
Eco88I	CYCGRG	1 cut(s)	1805
EcoO109I	RGGNCCY	1 cut(s)	1810
EcoRII	CCWGG	7 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248
EcoRV	GATATC	1 cut(s)	1513
EcoT14I	CCWWGG	2 cut(s)	303, 1869
EcoT22I	ATGCAT	2 cut(s)	184, 2278
ErhI	CCWWGG	2 cut(s)	303, 1869
FalI	AAGNNNNNCTT	2 cut(s)	1024, 1056
FaqI	GGGAC	2 cut(s)	857, 2247
FauI	CCCGC	1 cut(s)	2350
FauNDI	CATATG	2 cut(s)	235, 2278
FokI	GGATG	3 cut(s)	144, 1061, 1991
FspBI	CTAG	3 cut(s)	596, 1398, 1571
GlaI	GCGC	1 cut(s)	651
HaeIII	GGCC	7 cut(s)	885, 979, 1222, 1240, 1649, 1811, 2212
HhaI	GCGC	1 cut(s)	652
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	2205
HphI	GGTGA	5 cut(s)	182, 1313, 1466, 1551, 2121
Hpy166II	GTNNAC	4 cut(s)	293, 442, 721, 1055
Hpy8I	GTNNAC	4 cut(s)	293, 442, 721, 1055
HpyAV	CCTTC	5 cut(s)	538, 777, 1292, 1990, 2136
HpyCH4IV	ACGT	1 cut(s)	1233
HpySE526I	ACGT	1 cut(s)	1233
HspAI	GCGC	1 cut(s)	650
Kzo9I	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
LmnI	GCTCC	5 cut(s)	136, 145, 1672, 2037, 2150
LweI	GCATC	9 cut(s)	139, 256, 317, 385, 577, 1063, 1325, 1956, 1969
MabI	ACCWGGT	1 cut(s)	1561
MaeI	CTAG	3 cut(s)	596, 1398, 1571
MaeII	ACGT	1 cut(s)	1233
MaeIII	GTNAC	4 cut(s)	706, 1301, 2369, 2377
MalI	GATC	8 cut(s)	418, 642, 768, 899, 939, 1413, 1434, 2007
MboI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
MfeI	CAATTG	1 cut(s)	1787
MflI	RGATCY	3 cut(s)	416, 766, 1411
MhlI	GDGCHC	2 cut(s)	1525, 2042
MlsI	TGGCCA	1 cut(s)	2212
MluNI	TGGCCA	1 cut(s)	2212
MlyI	GAGTC	2 cut(s)	1835, 1898
MmeI	TCCRAC	4 cut(s)	364, 793, 1110, 1917
Mox20I	TGGCCA	1 cut(s)	2212
Mph1103I	ATGCAT	2 cut(s)	184, 2278
MroXI	GAANNNNTTC	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	2212
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	2212
MspA1I	CMGCKG	2 cut(s)	251, 2183
MspR9I	CCNGG	7 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250
MunI	CAATTG	1 cut(s)	1787
Mva1269I	GAATGC	3 cut(s)	1675, 1744, 1799
MvaI	CCWGG	7 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250
MvnI	CGCG	1 cut(s)	652
NcoI	CCATGG	1 cut(s)	303
NdeI	CATATG	2 cut(s)	235, 2278
NdeII	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
NlaIV	GGNNCC	2 cut(s)	884, 2246
NmuCI	GTSAC	2 cut(s)	1301, 2369
NsiI	ATGCAT	2 cut(s)	184, 2278
NspI	RCATGY	3 cut(s)	1592, 1784, 2015
NspV	TTCGAA	1 cut(s)	574
PaeI	GCATGC	2 cut(s)	1592, 2015
PaeR7I	CTCGAG	1 cut(s)	1805
PagI	TCATGA	1 cut(s)	643
PaqCI	CACCTGC	1 cut(s)	2140
PceI	AGGCCT	2 cut(s)	1222, 1240
PcsI	WCGNNNNNNNCGW	1 cut(s)	1835
PctI	GAATGC	3 cut(s)	1675, 1744, 1799
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	9 cut(s)	86, 200, 215, 332, 919, 1184, 1372, 1471, 1865
PflMI	CCANNNNNTGG	3 cut(s)	167, 254, 934
PleI	GAGTC	2 cut(s)	1834, 1897
PmaCI	CACGTG	1 cut(s)	1234
PmlI	CACGTG	1 cut(s)	1234
PpsI	GAGTC	2 cut(s)	1834, 1897
Ppu21I	YACGTR	1 cut(s)	1234
PshBI	ATTAAT	1 cut(s)	1197
PsiI	TTATAA	1 cut(s)	2396
Psp6I	CCWGG	7 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248
PspCI	CACGTG	1 cut(s)	1234
PspGI	CCWGG	7 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248
PspN4I	GGNNCC	2 cut(s)	884, 2246
PspPI	GGNCC	3 cut(s)	883, 1810, 2244
PspXI	VCTCGAGB	1 cut(s)	1805
PstI	CTGCAG	3 cut(s)	1021, 1255, 2308
PsuI	RGATCY	3 cut(s)	416, 766, 1411
PvuII	CAGCTG	2 cut(s)	251, 2183
RsaI	GTAC	5 cut(s)	742, 851, 1056, 1545, 2298
RsaNI	GTAC	5 cut(s)	741, 850, 1055, 1544, 2297
RseI	CAYNNNNRTG	1 cut(s)	225
Sau3AI	GATC	8 cut(s)	416, 640, 766, 897, 937, 1411, 1432, 2005
Sau96I	GGNCC	3 cut(s)	883, 1810, 2244
SchI	GAGTC	2 cut(s)	1835, 1898
ScrFI	CCNGG	7 cut(s)	168, 517, 1445, 1518, 1563, 1753, 2250
SduI	GDGCHC	2 cut(s)	1525, 2042
SexAI	ACCWGGT	1 cut(s)	1561
SfaNI	GCATC	9 cut(s)	139, 256, 317, 385, 577, 1063, 1325, 1956, 1969
SfcI	CTRYAG	4 cut(s)	144, 1017, 1251, 2304
Sfr274I	CTCGAG	1 cut(s)	1805
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	1 cut(s)	2244
SlaI	CTCGAG	1 cut(s)	1805
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	1805, 2202
SmoI	CTYRAG	2 cut(s)	1805, 2202
SphI	GCATGC	2 cut(s)	1592, 2015
SseBI	AGGCCT	2 cut(s)	1222, 1240
SsiI	CCGC	3 cut(s)	1121, 1772, 2343
SspI	AATATT	2 cut(s)	100, 912
SspMI	CTAG	3 cut(s)	596, 1398, 1571
StuI	AGGCCT	2 cut(s)	1222, 1240
StyD4I	CCNGG	7 cut(s)	166, 515, 1443, 1516, 1561, 1751, 2248
StyI	CCWWGG	2 cut(s)	303, 1869
TaiI	ACGT	1 cut(s)	1236
TaqI	TCGA	8 cut(s)	574, 940, 1150, 1182, 1776, 1806, 1824, 1829
TatI	WGTACW	2 cut(s)	740, 1054
TfiI	GAWTC	9 cut(s)	86, 200, 215, 332, 919, 1184, 1372, 1471, 1865
TscAI	CASTG	4 cut(s)	16, 295, 2180, 2313
TseFI	GTSAC	2 cut(s)	1301, 2369
Tsp45I	GTSAC	2 cut(s)	1301, 2369
TspDTI	ATGAA	6 cut(s)	42, 312, 366, 876, 1344, 2021
TspRI	CASTG	4 cut(s)	16, 295, 2180, 2313
Van91I	CCANNNNNTGG	3 cut(s)	167, 254, 934
VpaK11BI	GGWCC	1 cut(s)	2244
VspI	ATTAAT	1 cut(s)	1197
XapI	RAATTY	4 cut(s)	123, 570, 863, 1554
XbaI	TCTAGA	1 cut(s)	1570
XceI	RCATGY	3 cut(s)	1592, 1784, 2015
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	1805
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	3 cut(s)	596, 1398, 1571
Zsp2I	ATGCAT	2 cut(s)	184, 2278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.