Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

1136078 .. 1138663

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATGGGCAGTGTCGAGCTGAATCTGAGGGAGACTGAGCTGTGTCTTGGTCTTCCCGGTGGAGATACAGTGGCTCCGGTAACCGGAAACAAGAGAGGGTTCTCAGAGACGGTTGATCTGAAGCTAAATCTGAATAATGAGCCTGCAAACAAGGAAGGATCTACGACTCATGACGTCGTGACTTTTGATTCCAAGGAGAAGAGTGCTTGTCCTAAAGATCCAGCCAAACCTCCGGCCAAGGCACAAGTTGTGGGATGGCCACCGGTGAGATCATACCGGAAGAACGTGATGGTTTCCTGCCAAAAATCAAGCGGTGGCCCGGAGGCGGCGGCGTTCGTGAAGGTATCAATGGACGGAGCACCGTACTTGAGGAAAATCGATTTGAGGATGTATAAAAGCTACGATGAGCTTTCTAATGCTTTGTCCAACATGTTCAGCTCTTTTACCATGGGCAAACATGGAGGAGAAGAAGGAATGATAGACTTCATGAATGAGAGGAAATTGATGGATTTGGTGAATAGCTGGGACTATGTTCCCTCTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGGCCAATGTTCGTCGATACATGCAAGCGTTTACGTCTCATGAAAGGATCGGATGCCATTGGTCTCGCTCCGAGGGCGATGGAGAAGTGCAAGAGCAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

229

Amino Acids

25.29

Weight (kDa)

6.74

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	11 - 220	2.9e-78	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AciI	CCGC	3 cut(s)	312, 326, 329
AclWI	GGATC	3 cut(s)	166, 212, 640
AcoI	YGGCCR	3 cut(s)	234, 257, 587
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	83, 325
AflIII	ACRYGT	1 cut(s)	429
AgeI	ACCGGT	1 cut(s)	262
AluBI	AGCT	8 cut(s)	19, 40, 124, 399, 409, 438, 522, 686
AluI	AGCT	8 cut(s)	19, 40, 124, 399, 409, 438, 522, 686
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	4 cut(s)	26, 101, 626, 653
AlwI	GGATC	3 cut(s)	166, 212, 640
AoxI	GGCC	4 cut(s)	234, 257, 316, 587
AsiGI	ACCGGT	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	2 cut(s)	57, 320
AsuHPI	GGTGA	3 cut(s)	277, 526, 569
BalI	TGGCCA	2 cut(s)	259, 589
BbsI	GAAGAC	2 cut(s)	44, 552
Bbv12I	GWGCWC	1 cut(s)	361
BccI	CCATC	4 cut(s)	249, 283, 499, 658
BcnI	CCSGG	2 cut(s)	57, 320
BcoDI	GTCTC	4 cut(s)	26, 101, 626, 653
BisI	GCNGC	2 cut(s)	327, 330
BlsI	GCNGC	2 cut(s)	328, 331
Bme1390I	CCNGG	2 cut(s)	57, 320
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	57, 320
BmsI	GCATC	2 cut(s)	555, 628
BpiI	GAAGAC	2 cut(s)	44, 552
BpuEI	CTTGAG	1 cut(s)	388
BpuMI	CCSGG	2 cut(s)	57, 320
Bsa29I	ATCGAT	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	5 cut(s)	192, 237, 447, 584, 656
BsaWI	WCCGGW	4 cut(s)	76, 83, 262, 276
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 58, 84, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 325
Bse118I	RCCGGY	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	5 cut(s)	192, 237, 447, 584, 656
BseGI	GGATG	4 cut(s)	260, 393, 570, 643
BseLI	CCNNNNNNNGG	2 cut(s)	83, 325
BseMII	CTCAG	3 cut(s)	17, 27, 117
BseRI	GAGGAG	1 cut(s)	477
BseYI	CCCAGC	1 cut(s)	522
BshFI	GGCC	4 cut(s)	236, 259, 318, 589
BshTI	ACCGGT	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	7 cut(s)	57, 77, 84, 233, 263, 277, 320
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	2 cut(s)	83, 325
BsmAI	GTCTC	4 cut(s)	26, 101, 626, 653
BsmBI	CGTCTC	2 cut(s)	101, 626
BsmFI	GGGAC	1 cut(s)	539
BsnI	GGCC	4 cut(s)	236, 259, 318, 589
Bso31I	GGTCTC	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	5 cut(s)	115, 158, 217, 269, 632
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	3 cut(s)	312, 326, 329
BspANI	GGCC	4 cut(s)	236, 259, 318, 589
BspCNI	CTCAG	3 cut(s)	18, 28, 116
BspDI	ATCGAT	1 cut(s)	378
BspHI	TCATGA	3 cut(s)	169, 486, 624
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	3 cut(s)	166, 212, 640
BspTNI	GGTCTC	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	5 cut(s)	192, 237, 447, 584, 656
BssMI	GATC	5 cut(s)	115, 158, 217, 269, 632
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	4 cut(s)	192, 237, 447, 584
Bst4CI	ACNGT	4 cut(s)	70, 112, 363, 557
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	144, 611
BstDEI	CTNAG	3 cut(s)	26, 36, 103
BstDSI	CCRYGG	1 cut(s)	447
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	4 cut(s)	260, 393, 570, 643
BstKTI	GATC	5 cut(s)	118, 161, 220, 272, 635
BstMAI	GTCTC	4 cut(s)	26, 101, 626, 653
BstMBI	GATC	5 cut(s)	115, 158, 217, 269, 632
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNSI	RCATGY	2 cut(s)	433, 609
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	55, 318
BstV2I	GAAGAC	2 cut(s)	44, 552
BstX2I	RGATCY	2 cut(s)	158, 217
BstYI	RGATCY	2 cut(s)	158, 217
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	4 cut(s)	236, 259, 318, 589
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	677
BtsCI	GGATG	4 cut(s)	260, 393, 570, 643
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 75
Cac8I	GCNNGC	2 cut(s)	144, 611
CciI	TCATGA	3 cut(s)	169, 486, 624
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	364
CspAI	ACCGGT	1 cut(s)	262
CviAII	CATG	7 cut(s)	170, 430, 448, 458, 487, 606, 625
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	3 cut(s)	26, 36, 103
DpnI	GATC	5 cut(s)	117, 160, 219, 271, 634
DpnII	GATC	5 cut(s)	115, 158, 217, 269, 632
EaeI	YGGCCR	3 cut(s)	234, 257, 587
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	4 cut(s)	192, 237, 447, 584
Eco31I	GGTCTC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	79
EcoT14I	CCWWGG	4 cut(s)	192, 237, 447, 584
ErhI	CCWWGG	4 cut(s)	192, 237, 447, 584
Esp3I	CGTCTC	2 cut(s)	101, 626
FaeI	CATG	7 cut(s)	173, 433, 451, 461, 490, 609, 628
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	7 cut(s)	169, 429, 447, 457, 486, 605, 624
Fnu4HI	GCNGC	2 cut(s)	327, 330
FokI	GGATG	4 cut(s)	267, 400, 577, 650
Fsp4HI	GCNGC	2 cut(s)	327, 330
GluI	GCNGC	2 cut(s)	327, 330
GsaI	CCCAGC	1 cut(s)	526
HaeIII	GGCC	4 cut(s)	236, 259, 318, 589
HapII	CCGG	7 cut(s)	57, 77, 84, 233, 263, 277, 320
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	7 cut(s)	173, 433, 451, 461, 490, 609, 628
HinfI	GANTC	3 cut(s)	22, 166, 188
HpaII	CCGG	7 cut(s)	57, 77, 84, 233, 263, 277, 320
HphI	GGTGA	3 cut(s)	277, 526, 569
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	6 cut(s)	27, 106, 120, 132, 637, 657
Hpy188III	TCNNGA	5 cut(s)	170, 178, 337, 487, 625
Hpy8I	GTNNAC	1 cut(s)	617
Hpy99I	CGWCG	4 cut(s)	179, 575, 581, 602
HpyAV	CCTTC	3 cut(s)	149, 334, 464
HpyCH4III	ACNGT	4 cut(s)	70, 112, 363, 557
HpyCH4IV	ACGT	4 cut(s)	174, 285, 579, 619
HpyCH4V	TGCA	3 cut(s)	146, 609, 675
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	3 cut(s)	26, 36, 103
HpySE526I	ACGT	4 cut(s)	174, 285, 579, 619
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	7 cut(s)	173, 433, 451, 461, 490, 609, 628
Kzo9I	GATC	5 cut(s)	115, 158, 217, 269, 632
LmnI	GCTCC	3 cut(s)	79, 356, 658
LweI	GCATC	2 cut(s)	555, 628
MaeII	ACGT	4 cut(s)	174, 285, 579, 619
MaeIII	GTNAC	2 cut(s)	79, 178
MalI	GATC	5 cut(s)	117, 160, 219, 271, 634
MboI	GATC	5 cut(s)	115, 158, 217, 269, 632
MboII	GAAGA	5 cut(s)	44, 211, 292, 479, 557
MflI	RGATCY	2 cut(s)	158, 217
MhlI	GDGCHC	1 cut(s)	361
MlsI	TGGCCA	2 cut(s)	259, 589
MluCI	AATT	1 cut(s)	500
MluNI	TGGCCA	2 cut(s)	259, 589
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	450
Mox20I	TGGCCA	2 cut(s)	259, 589
MscI	TGGCCA	2 cut(s)	259, 589
Msp20I	TGGCCA	2 cut(s)	259, 589
MspI	CCGG	7 cut(s)	57, 77, 84, 233, 263, 277, 320
MspR9I	CCNGG	2 cut(s)	57, 320
MwoI	GCNNNNNNNGC	1 cut(s)	659
NciI	CCSGG	2 cut(s)	57, 320
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	5 cut(s)	115, 158, 217, 269, 632
NlaIII	CATG	7 cut(s)	173, 433, 451, 461, 490, 609, 628
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	2 cut(s)	433, 609
PagI	TCATGA	3 cut(s)	169, 486, 624
PciI	ACATGT	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	22, 188
PinAI	ACCGGT	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	328, 331
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	429
PspEI	GGTNACC	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	158, 217
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SatI	GCNGC	2 cut(s)	327, 330
Sau3AI	GATC	5 cut(s)	115, 158, 217, 269, 632
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	57, 320
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	2 cut(s)	555, 628
SgrAI	CRCCGGYG	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	1 cut(s)	500
SsiI	CCGC	3 cut(s)	312, 326, 329
StyD4I	CCNGG	2 cut(s)	55, 318
StyI	CCWWGG	4 cut(s)	192, 237, 447, 584
TaaI	ACNGT	4 cut(s)	70, 112, 363, 557
TaiI	ACGT	4 cut(s)	177, 288, 582, 622
TaqI	TCGA	3 cut(s)	15, 378, 600
TasI	AATT	1 cut(s)	500
TauI	GCSGC	2 cut(s)	329, 332
TfiI	GAWTC	2 cut(s)	22, 188
TscAI	CASTG	2 cut(s)	16, 75
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	4 cut(s)	475, 503, 558, 641
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	2 cut(s)	16, 75
XceI	RCATGY	2 cut(s)	433, 609
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.