Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

13510316 .. 13511784

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGACGAGCATGCTTGGAGTTGAGTGTGATTTGAACCTCAGAGAGACTGAGCTGTGCCTAGGGCTGCCTGGTGGTGGTACTTCTACTGTGGCTGAGCCGGAGACTAAGGCTACCGGAAAGAGAGGCTTCTCTGAGACCGTTGATCTCAAGCTCAACCTTCAGTCCAAGGAAGATCTGAATGACAATGTAAAAAATATTGCTTCCAGGGAGAAGAACGACCTCCGTTCTTGCACAAAAGATCCAGCAAAGCCTCCAGCCAAGGCACAAGTTGTGGGTTGGCCACCAGTTCGATCATACCGAAAGAACATAATGGCGCAGAAGAACACCAGCGAGGAAAACACTGAGAAGGCAACCGTCGGTGGTGGAGGCTGCAGCGCTGCATTTGTGAAGGTTTGCATGGATGGCGCTCCATATCTTCGTAAGGTGGATTTGAAGACGTACAAGAGTTACCAAGAGCTCTCTAATGCCTTAGCCAAGATGTTCAGTTCCTTCACCACCGGGGGCCCAAGGAATGATAGACTTCATGAACGAGAGCAAGTTGATGGATCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

185

Amino Acids

20.01

Weight (kDa)

8.55

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	15 - 178	3.2e-46	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	233, 553
AcoI	YGGCCR	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	79, 440
AfeI	AGCGCT	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	34, 433
AjnI	CCWGG	2 cut(s)	67, 203
AluBI	AGCT	3 cut(s)	52, 151, 457
AluI	AGCT	3 cut(s)	52, 151, 457
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	3 cut(s)	38, 95, 128
AlwI	GGATC	2 cut(s)	233, 553
Aor51HI	AGCGCT	1 cut(s)	376
AoxI	GGCC	2 cut(s)	278, 502
ApaI	GGGCCC	1 cut(s)	506
ApeKI	GCWGC	4 cut(s)	64, 369, 372, 377
AspA2I	CCTAGG	1 cut(s)	58
AspLEI	GCGC	3 cut(s)	316, 377, 407
AspS9I	GGNCC	2 cut(s)	502, 503
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	484
AvrII	CCTAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	506
BalI	TGGCCA	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	459, 506
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	51, 356, 364, 384
BccI	CCATC	2 cut(s)	395, 536
BciT130I	CCWGG	2 cut(s)	69, 205
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	38, 95, 128
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	370
BfoI	RGCGCY	2 cut(s)	378, 408
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	4 cut(s)	65, 370, 373, 378
BlnI	CCTAGG	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	4 cut(s)	66, 371, 374, 379
Bme1390I	CCNGG	3 cut(s)	69, 205, 499
BmgT120I	GGNCC	2 cut(s)	502, 503
BmiI	GGNNCC	2 cut(s)	503, 504
BmrFI	CCNGG	3 cut(s)	69, 205, 499
BpiI	GAAGAC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	469
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	499
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	6 cut(s)	58, 165, 204, 258, 498, 506
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	284
BseBI	CCWGG	2 cut(s)	69, 205
BseDI	CCNNGG	6 cut(s)	58, 165, 204, 258, 498, 506
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	5 cut(s)	39, 52, 84, 123, 333
BseNI	ACTGG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	4 cut(s)	51, 356, 364, 384
BshFI	GGCC	2 cut(s)	280, 504
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	98, 114, 498
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	3 cut(s)	38, 95, 128
BsnI	GGCC	2 cut(s)	280, 504
Bso31I	GGTCTC	1 cut(s)	128
Bsp120I	GGGCCC	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	459, 506
Bsp143I	GATC	5 cut(s)	142, 172, 238, 290, 545
Bsp1720I	GCTNAGC	1 cut(s)	93
BspANI	GGCC	2 cut(s)	280, 504
BspCNI	CTCAG	5 cut(s)	40, 51, 85, 124, 334
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	503, 504
BspMAI	CTGCAG	1 cut(s)	374
BspPI	GGATC	2 cut(s)	233, 553
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	6 cut(s)	58, 165, 204, 258, 498, 506
BssMI	GATC	5 cut(s)	142, 172, 238, 290, 545
BssT1I	CCWWGG	4 cut(s)	58, 165, 258, 506
Bst2UI	CCWGG	2 cut(s)	69, 205
Bst4CI	ACNGT	3 cut(s)	88, 139, 355
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	7 cut(s)	38, 48, 93, 105, 132, 342, 469
BstF5I	GGATG	1 cut(s)	406
BstH2I	RGCGCY	2 cut(s)	378, 408
BstHHI	GCGC	3 cut(s)	316, 377, 407
BstKTI	GATC	5 cut(s)	145, 175, 241, 293, 548
BstMAI	GTCTC	3 cut(s)	38, 95, 128
BstMBI	GATC	5 cut(s)	142, 172, 238, 290, 545
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNI	CCWGG	2 cut(s)	69, 205
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	3 cut(s)	67, 203, 497
BstSFI	CTRYAG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	4 cut(s)	51, 356, 364, 384
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	3 cut(s)	172, 238, 545
BstYI	RGATCY	3 cut(s)	172, 238, 545
BsuRI	GGCC	2 cut(s)	280, 504
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	11
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	3 cut(s)	316, 377, 407
Cfr13I	GGNCC	2 cut(s)	502, 503
Csp6I	GTAC	2 cut(s)	78, 439
CviAII	CATG	3 cut(s)	10, 397, 524
CviQI	GTAC	2 cut(s)	78, 439
DdeI	CTNAG	7 cut(s)	38, 48, 93, 105, 132, 342, 469
DpnI	GATC	5 cut(s)	144, 174, 240, 292, 547
DpnII	GATC	5 cut(s)	142, 172, 238, 290, 545
EaeI	YGGCCR	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	4 cut(s)	58, 165, 258, 506
Eco24I	GRGCYC	2 cut(s)	459, 506
Eco31I	GGTCTC	1 cut(s)	128
Eco47III	AGCGCT	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	67, 203
EcoT14I	CCWWGG	4 cut(s)	58, 165, 258, 506
EcoT38I	GRGCYC	2 cut(s)	459, 506
ErhI	CCWWGG	4 cut(s)	58, 165, 258, 506
FaeI	CATG	3 cut(s)	13, 400, 527
FaiI	YATR	6 cut(s)	11, 295, 308, 398, 412, 525
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	3 cut(s)	9, 396, 523
Fnu4HI	GCNGC	4 cut(s)	65, 370, 373, 378
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	2 cut(s)	459, 506
Fsp4HI	GCNGC	4 cut(s)	65, 370, 373, 378
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	3 cut(s)	315, 376, 406
GluI	GCNGC	4 cut(s)	65, 370, 373, 378
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	2 cut(s)	378, 408
HaeIII	GGCC	2 cut(s)	280, 504
HapII	CCGG	3 cut(s)	98, 114, 498
HhaI	GCGC	3 cut(s)	316, 377, 407
Hin1II	CATG	3 cut(s)	13, 400, 527
Hin6I	GCGC	3 cut(s)	314, 375, 405
HinP1I	GCGC	3 cut(s)	314, 375, 405
HpaII	CCGG	3 cut(s)	98, 114, 498
HphI	GGTGA	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	41, 133, 177
Hpy188III	TCNNGA	1 cut(s)	524
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	4 cut(s)	167, 340, 382, 499
HpyCH4III	ACNGT	3 cut(s)	88, 139, 355
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	4 cut(s)	231, 372, 380, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpyF3I	CTNAG	7 cut(s)	38, 48, 93, 105, 132, 342, 469
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	3 cut(s)	13, 400, 527
HspAI	GCGC	3 cut(s)	314, 375, 405
Kzo9I	GATC	5 cut(s)	142, 172, 238, 290, 545
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	4 cut(s)	51, 356, 364, 384
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	5 cut(s)	144, 174, 240, 292, 547
MboI	GATC	5 cut(s)	142, 172, 238, 290, 545
MboII	GAAGA	6 cut(s)	182, 223, 331, 407, 445, 540
MflI	RGATCY	3 cut(s)	172, 238, 545
MhlI	GDGCHC	2 cut(s)	459, 506
MlsI	TGGCCA	1 cut(s)	280
MluNI	TGGCCA	1 cut(s)	280
MnlI	CCTC	6 cut(s)	47, 116, 230, 261, 325, 359
Mox20I	TGGCCA	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	1 cut(s)	553
Msp20I	TGGCCA	1 cut(s)	280
MspI	CCGG	3 cut(s)	98, 114, 498
MspR9I	CCNGG	3 cut(s)	69, 205, 499
MvaI	CCWGG	2 cut(s)	69, 205
MwoI	GCNNNNNNNGC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	499
NdeII	GATC	5 cut(s)	142, 172, 238, 290, 545
NlaIII	CATG	3 cut(s)	13, 400, 527
NlaIV	GGNNCC	2 cut(s)	503, 504
NspI	RCATGY	1 cut(s)	13
PaeI	GCATGC	1 cut(s)	13
PagI	TCATGA	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PkrI	GCNGC	4 cut(s)	66, 371, 374, 379
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	67, 203
PspGI	CCWGG	2 cut(s)	67, 203
PspN4I	GGNNCC	2 cut(s)	503, 504
PspOMI	GGGCCC	1 cut(s)	502
PspPI	GGNCC	2 cut(s)	502, 503
PstI	CTGCAG	1 cut(s)	374
PsuI	RGATCY	3 cut(s)	172, 238, 545
RsaI	GTAC	2 cut(s)	79, 440
RsaNI	GTAC	2 cut(s)	78, 439
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	553
SatI	GCNGC	4 cut(s)	65, 370, 373, 378
Sau3AI	GATC	5 cut(s)	142, 172, 238, 290, 545
Sau96I	GGNCC	2 cut(s)	502, 503
ScrFI	CCNGG	3 cut(s)	69, 205, 499
SduI	GDGCHC	2 cut(s)	459, 506
SetI	ASST	9 cut(s)	39, 54, 153, 159, 222, 393, 426, 440, 459
SfcI	CTRYAG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	13
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	67, 203, 497
StyI	CCWWGG	4 cut(s)	58, 165, 258, 506
TaaI	ACNGT	3 cut(s)	88, 139, 355
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	553
Tru9I	TTAA	1 cut(s)	553
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	4 cut(s)	64, 369, 372, 377
TspDTI	ATGAA	2 cut(s)	512, 540
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	346
XceI	RCATGY	1 cut(s)	13
XmaJI	CCTAGG	1 cut(s)	58
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.