Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033355.1

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1701

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033355.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 742 bp

gtgggtggccgtggctcagttagtttccatggaagctgttagccggaagatgactttgaacttcaaagaaaccgagctgtgtcttgggttgcccggcggggctgctgtgaccgagccggagatctgtacccctaaggctaccggaaagagaggtttctccgaaaccgttgatctcaaactcaacctacacgccaaggaagatctgataaatgagaatgtcaaaaatgtttcttccaaggagaaaaaccttccatgcgttaaagatccagcaaaaccaccagccaaggcacaagttgtcggttggccaccagtgcgctcctacagaaagaacgttatggcgcagaaaagcaccggcgaggagagcagtactactactgagaaggctgcattcgtgaaggtttgcatggatggtgcaccctatcttcgtaaggtggatttgaagatgtacaagagctacaaggagctatctgatgccttgtccaagatgttcagctccttcaccatgggttactatggggcccaaggaatgatagacttcatgaatgagagcaagttgatggatcttctgaacagtactgagtatgtgccgacctatgaagataaggatggagactggatgcttgtgggtgatgttccatgggagatgtttgttgattcatgcaagcgcctgcgaataatgaaaggatcagaagcaattggacttgctccaaaagcgatggagaaatgcaagaacagaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

246

Amino Acids

27.38

Weight (kDa)

8.6

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	97
AclI	AACGTT	1 cut(s)	331
AclWI	GGATC	3 cut(s)	258, 568, 692
AcoI	YGGCCR	2 cut(s)	7, 303
AfaI	GTAC	4 cut(s)	128, 368, 447, 575
AgsI	TTSAA	3 cut(s)	59, 65, 440
AluBI	AGCT	6 cut(s)	36, 77, 454, 464, 493, 739
AluI	AGCT	6 cut(s)	36, 77, 454, 464, 493, 739
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	604
Alw44I	GTGCAC	1 cut(s)	412
AlwI	GGATC	3 cut(s)	258, 568, 692
AlwNI	CAGNNNCTG	1 cut(s)	739
AoxI	GGCC	3 cut(s)	7, 303, 517
ApaI	GGGCCC	1 cut(s)	521
ApaLI	GTGCAC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	102, 384
AspLEI	GCGC	3 cut(s)	316, 341, 667
AspS9I	GGNCC	2 cut(s)	517, 518
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	491, 639
AxyI	CCTNAGG	1 cut(s)	133
BaeGI	GKGCMC	2 cut(s)	416, 521
BalI	TGGCCA	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	89, 371
BccI	CCATC	4 cut(s)	402, 551, 600, 710
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	604
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	668
BglII	AGATCT	2 cut(s)	121, 200
BisI	GCNGC	2 cut(s)	103, 385
BlsI	GCNGC	2 cut(s)	104, 386
BmcAI	AGTACT	2 cut(s)	368, 575
Bme1390I	CCNGG	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	517, 518
BmiI	GGNNCC	2 cut(s)	518, 519
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	461, 607
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	8 cut(s)	10, 28, 193, 235, 283, 502, 521, 636
BsaWI	WCCGGW	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	309, 618
Bse21I	CCTNAGG	1 cut(s)	133
BseDI	CCNNGG	8 cut(s)	10, 28, 193, 235, 283, 502, 521, 636
BseGI	GGATG	3 cut(s)	413, 611, 622
BseMII	CTCAG	3 cut(s)	30, 367, 568
BseNI	ACTGG	2 cut(s)	309, 618
BseRI	GAGGAG	1 cut(s)	372
BseSI	GKGCMC	2 cut(s)	416, 521
BseXI	GCAGC	2 cut(s)	89, 371
BshFI	GGCC	3 cut(s)	9, 305, 519
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	5 cut(s)	44, 94, 117, 142, 352
BsmAI	GTCTC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	3 cut(s)	9, 305, 519
Bsp120I	GGGCCC	1 cut(s)	517
Bsp1286I	GDGCHC	2 cut(s)	416, 521
Bsp1407I	TGTACA	1 cut(s)	445
Bsp143I	GATC	6 cut(s)	121, 170, 200, 263, 560, 684
Bsp19I	CCATGG	3 cut(s)	28, 502, 636
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	3 cut(s)	9, 305, 519
BspCNI	CTCAG	3 cut(s)	29, 368, 569
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	518, 519
BspPI	GGATC	3 cut(s)	258, 568, 692
BsrFI	RCCGGY	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	445
BsrI	ACTGG	2 cut(s)	309, 618
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	8 cut(s)	10, 28, 193, 235, 283, 502, 521, 636
BssMI	GATC	6 cut(s)	121, 170, 200, 263, 560, 684
BssT1I	CCWWGG	7 cut(s)	28, 193, 235, 283, 502, 521, 636
Bst4CI	ACNGT	2 cut(s)	167, 573
BstAUI	TGTACA	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	663, 669
BstDEI	CTNAG	4 cut(s)	16, 133, 376, 577
BstDSI	CCRYGG	4 cut(s)	10, 28, 502, 636
BstF5I	GGATG	3 cut(s)	413, 611, 622
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	3 cut(s)	316, 341, 667
BstKTI	GATC	6 cut(s)	124, 173, 203, 266, 563, 687
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	6 cut(s)	121, 170, 200, 263, 560, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 361, 711
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	2 cut(s)	416, 521
BstV1I	GCAGC	2 cut(s)	89, 371
BstX2I	RGATCY	4 cut(s)	121, 200, 263, 560
BstYI	RGATCY	4 cut(s)	121, 200, 263, 560
Bsu36I	CCTNAGG	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	9, 305, 519
BtgI	CCRYGG	4 cut(s)	10, 28, 502, 636
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	3 cut(s)	413, 611, 622
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	663, 669
CaiI	CAGNNNCTG	1 cut(s)	739
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	3 cut(s)	316, 341, 667
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	2 cut(s)	517, 518
Csp6I	GTAC	4 cut(s)	127, 367, 446, 574
CviAII	CATG	7 cut(s)	29, 253, 404, 503, 539, 637, 658
CviQI	GTAC	4 cut(s)	127, 367, 446, 574
DdeI	CTNAG	4 cut(s)	16, 133, 376, 577
DpnI	GATC	6 cut(s)	123, 172, 202, 265, 562, 686
DpnII	GATC	6 cut(s)	121, 170, 200, 263, 560, 684
EaeI	YGGCCR	2 cut(s)	7, 303
Eco130I	CCWWGG	7 cut(s)	28, 193, 235, 283, 502, 521, 636
Eco24I	GRGCYC	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	517
EcoT14I	CCWWGG	7 cut(s)	28, 193, 235, 283, 502, 521, 636
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	7 cut(s)	28, 193, 235, 283, 502, 521, 636
FaeI	CATG	7 cut(s)	32, 256, 407, 506, 542, 640, 661
FatI	CATG	7 cut(s)	28, 252, 403, 502, 538, 636, 657
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	103, 385
FokI	GGATG	3 cut(s)	420, 618, 629
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	2 cut(s)	103, 385
GlaI	GCGC	3 cut(s)	315, 340, 666
GluI	GCNGC	2 cut(s)	103, 385
HaeII	RGCGCY	1 cut(s)	668
HaeIII	GGCC	3 cut(s)	9, 305, 519
HapII	CCGG	5 cut(s)	44, 94, 117, 142, 352
HhaI	GCGC	3 cut(s)	316, 341, 667
Hin1II	CATG	7 cut(s)	32, 256, 407, 506, 542, 640, 661
Hin6I	GCGC	3 cut(s)	314, 339, 665
HinP1I	GCGC	3 cut(s)	314, 339, 665
HinfI	GANTC	1 cut(s)	654
HpaII	CCGG	5 cut(s)	44, 94, 117, 142, 352
HphI	GGTGA	2 cut(s)	491, 639
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	5 cut(s)	161, 205, 470, 568, 689
Hpy188III	TCNNGA	2 cut(s)	392, 539
Hpy8I	GTNNAC	1 cut(s)	414
HpyAV	CCTTC	4 cut(s)	258, 374, 389, 506
HpyCH4III	ACNGT	2 cut(s)	167, 573
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	387, 403, 414, 661, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 361, 711
HpyF3I	CTNAG	4 cut(s)	16, 133, 376, 577
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	7 cut(s)	32, 256, 407, 506, 542, 640, 661
HspAI	GCGC	3 cut(s)	314, 339, 665
Kzo9I	GATC	6 cut(s)	121, 170, 200, 263, 560, 684
LmnI	GCTCC	4 cut(s)	321, 461, 498, 710
Lsp1109I	GCAGC	2 cut(s)	89, 371
LweI	GCATC	2 cut(s)	461, 607
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	107, 507
MalI	GATC	6 cut(s)	123, 172, 202, 265, 562, 686
MboI	GATC	6 cut(s)	121, 170, 200, 263, 560, 684
MboII	GAAGA	7 cut(s)	59, 210, 223, 414, 452, 555, 609
MfeI	CAATTG	1 cut(s)	694
MflI	RGATCY	4 cut(s)	121, 200, 263, 560
MhlI	GDGCHC	2 cut(s)	416, 521
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	1 cut(s)	694
MluNI	TGGCCA	1 cut(s)	305
MnlI	CCTC	2 cut(s)	144, 350
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	1 cut(s)	259
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	5 cut(s)	44, 94, 117, 142, 352
MspR9I	CCNGG	1 cut(s)	94
MunI	CAATTG	1 cut(s)	694
Mva1269I	GAATGC	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	311, 361, 711
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	3 cut(s)	28, 502, 636
NdeII	GATC	6 cut(s)	121, 170, 200, 263, 560, 684
NlaIII	CATG	7 cut(s)	32, 256, 407, 506, 542, 640, 661
NlaIV	GGNNCC	2 cut(s)	518, 519
NmuCI	GTSAC	1 cut(s)	107
PagI	TCATGA	1 cut(s)	538
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	654
PkrI	GCNGC	2 cut(s)	104, 386
Psp1406I	AACGTT	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	518, 519
PspOMI	GGGCCC	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	517, 518
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	4 cut(s)	121, 200, 263, 560
RsaI	GTAC	4 cut(s)	128, 368, 447, 575
RsaNI	GTAC	4 cut(s)	127, 367, 446, 574
SaqAI	TTAA	1 cut(s)	259
SatI	GCNGC	2 cut(s)	103, 385
Sau3AI	GATC	6 cut(s)	121, 170, 200, 263, 560, 684
Sau96I	GGNCC	2 cut(s)	517, 518
ScaI	AGTACT	2 cut(s)	368, 575
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	2 cut(s)	416, 521
SfaNI	GCATC	2 cut(s)	461, 607
SfcI	CTRYAG	1 cut(s)	320
SgrAI	CRCCGGYG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	694
SsiI	CCGC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	7 cut(s)	28, 193, 235, 283, 502, 521, 636
TaaI	ACNGT	2 cut(s)	167, 573
TaiI	ACGT	1 cut(s)	334
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	694
TatI	WGTACW	3 cut(s)	366, 445, 573
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	2 cut(s)	102, 384
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	5 cut(s)	527, 555, 610, 646, 693
TspRI	CASTG	1 cut(s)	316
VneI	GTGCAC	1 cut(s)	412
ZrmI	AGTACT	2 cut(s)	368, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.