Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Reverse (-)

286225 .. 287789

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggagacagagctcaggctagggttgcccggaggaggaggaggaggtggtgaaggagaagatcaggtggtggtgatgatgaggaagagaggcttctctgaaaccgagagtgagatcactactgatgatgagagcagcacttgtgtggatttgaagctgaaactttcttccaaggatggtagcagcagcactaatgaaaagtccaagagcttgatgatgaacaagaacaaggagaagaacatggatcttcccgccgatccggcaaagcctccggccaaggcacaagtagtgggttggccgccggtgagatccttccggaagaacatgttgagcgcacagaagagcagttctactgatgaaagcaaggctggaggaaatgcagctttggtgaaggtgagcatggatggtgcgccttacctccgaaaggtcgacctgaacatgtacaagacttaccctcagctctccgacgccctagccaaaatgttcagctcgttcaccattggtaactgtggatcccaaggaacgattgatttcatgaatgagaggaagctgatggatcttctcaatgattctgattacatcccaacttatgaagacaaggacggtgactggatgcttgttggtgatgtcccgtgggagatgtttgttgaatcatgcaagagactgcgcataatgaagggaaaggaggctgttggactcgcaccaagagccatggagaaatgcaagaacagaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

245

Amino Acids

26.91

Weight (kDa)

6.46

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	429
AccIII	TCCGGA	1 cut(s)	315
AciI	CCGC	2 cut(s)	252, 299
AclWI	GGATC	6 cut(s)	251, 252, 303, 507, 520, 564
AcoI	YGGCCR	2 cut(s)	273, 296
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	35, 424
AflIII	ACRYGT	2 cut(s)	324, 438
AgsI	TTSAA	2 cut(s)	154, 650
AleI	CACNNNNGTG	1 cut(s)	143
AluBI	AGCT	8 cut(s)	13, 157, 210, 383, 460, 489, 550, 735
AluI	AGCT	8 cut(s)	13, 157, 210, 383, 460, 489, 550, 735
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	6 cut(s)	251, 252, 303, 507, 520, 564
AlwNI	CAGNNNCTG	1 cut(s)	735
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	2 cut(s)	273, 296
ApeKI	GCWGC	4 cut(s)	135, 183, 186, 380
AspLEI	GCGC	3 cut(s)	335, 412, 669
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	8 cut(s)	62, 85, 316, 400, 406, 487, 617, 635
BamHI	GGATCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	147, 195, 198, 392
BccI	CCATC	3 cut(s)	170, 398, 547
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	655
BfaI	CTAG	2 cut(s)	20, 473
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
BlsI	GCNGC	5 cut(s)	137, 185, 188, 300, 382
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	600
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	2 cut(s)	14, 456
BpuMI	CCSGG	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	5 cut(s)	171, 276, 517, 632, 711
BsaWI	WCCGGW	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 424
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	614
BseAI	TCCGGA	1 cut(s)	315
BseDI	CCNNGG	5 cut(s)	171, 276, 517, 632, 711
BseGI	GGATG	4 cut(s)	181, 409, 579, 618
BseLI	CCNNNNNNNGG	2 cut(s)	35, 424
BseMII	CTCAG	2 cut(s)	28, 470
BseNI	ACTGG	1 cut(s)	614
BseRI	GAGGAG	4 cut(s)	48, 51, 54, 57
BseXI	GCAGC	4 cut(s)	147, 195, 198, 392
BshFI	GGCC	2 cut(s)	275, 298
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	30, 260, 272, 302, 316
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	35, 424
BsmAI	GTCTC	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	275, 298
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	315
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	2 cut(s)	252, 299
BspANI	GGCC	2 cut(s)	275, 298
BspCNI	CTCAG	2 cut(s)	27, 469
BspEI	TCCGGA	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	6 cut(s)	251, 252, 303, 507, 520, 564
BspQI	GCTCTTC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	301
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	614
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	5 cut(s)	171, 276, 517, 632, 711
BssMI	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	4 cut(s)	171, 276, 517, 711
Bst4CI	ACNGT	2 cut(s)	509, 605
Bst6I	CTCTTC	2 cut(s)	80, 335
BstACI	GRCGYC	1 cut(s)	468
BstAUI	TGTACA	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	14, 456
BstDSI	CCRYGG	2 cut(s)	632, 711
BstENI	CCTNNNNNAGG	1 cut(s)	422
BstF5I	GGATG	4 cut(s)	181, 409, 579, 618
BstHHI	GCGC	3 cut(s)	335, 412, 669
BstKTI	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 260, 707
BstNSI	RCATGY	2 cut(s)	328, 442
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	4 cut(s)	147, 195, 198, 392
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	4 cut(s)	244, 308, 512, 556
BstYI	RGATCY	4 cut(s)	244, 308, 512, 556
BsuRI	GGCC	2 cut(s)	275, 298
BtgI	CCRYGG	2 cut(s)	632, 711
BtsCI	GGATG	4 cut(s)	181, 409, 579, 618
CaiI	CAGNNNCTG	1 cut(s)	735
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	3 cut(s)	335, 412, 669
Cfr10I	RCCGGY	1 cut(s)	301
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	7 cut(s)	241, 325, 400, 439, 535, 654, 712
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	2 cut(s)	14, 456
DpnI	GATC	7 cut(s)	63, 116, 246, 258, 310, 514, 558
DpnII	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
EaeI	YGGCCR	2 cut(s)	273, 296
Eam1104I	CTCTTC	2 cut(s)	80, 335
EarI	CTCTTC	2 cut(s)	80, 335
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	4 cut(s)	171, 276, 517, 711
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	422
EcoT14I	CCWWGG	4 cut(s)	171, 276, 517, 711
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	4 cut(s)	171, 276, 517, 711
FaeI	CATG	7 cut(s)	244, 328, 403, 442, 538, 657, 715
FaiI	YATR	9 cut(s)	242, 326, 401, 440, 536, 591, 655, 671, 713
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	7 cut(s)	240, 324, 399, 438, 534, 653, 711
FauI	CCCGC	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
FokI	GGATG	4 cut(s)	188, 416, 566, 625
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
FspBI	CTAG	2 cut(s)	20, 473
FspI	TGCGCA	1 cut(s)	668
GlaI	GCGC	3 cut(s)	334, 411, 668
GluI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	275, 298
HapII	CCGG	5 cut(s)	30, 260, 272, 302, 316
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	3 cut(s)	335, 412, 669
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	7 cut(s)	244, 328, 403, 442, 538, 657, 715
Hin6I	GCGC	3 cut(s)	333, 410, 667
HinP1I	GCGC	3 cut(s)	333, 410, 667
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	569, 650, 696
HpaII	CCGG	5 cut(s)	30, 260, 272, 302, 316
HphI	GGTGA	8 cut(s)	62, 85, 316, 400, 406, 487, 617, 635
Hpy166II	GTNNAC	2 cut(s)	430, 495
Hpy188I	TCNGA	4 cut(s)	100, 422, 466, 574
Hpy188III	TCNNGA	2 cut(s)	316, 535
Hpy8I	GTNNAC	2 cut(s)	430, 495
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	4 cut(s)	47, 322, 385, 670
HpyCH4III	ACNGT	2 cut(s)	509, 605
HpyCH4V	TGCA	3 cut(s)	380, 657, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 260, 707
HpyF3I	CTNAG	2 cut(s)	14, 456
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	7 cut(s)	244, 328, 403, 442, 538, 657, 715
HspAI	GCGC	3 cut(s)	333, 410, 667
Kpn2I	TCCGGA	1 cut(s)	315
Kzo9I	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
LguI	GCTCTTC	1 cut(s)	335
LpnPI	CCDG	9 cut(s)	43, 50, 273, 285, 315, 329, 354, 446, 595
Lsp1109I	GCAGC	4 cut(s)	147, 195, 198, 392
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	2 cut(s)	20, 473
MaeIII	GTNAC	2 cut(s)	503, 605
MalI	GATC	7 cut(s)	63, 116, 246, 258, 310, 514, 558
MboI	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
MboII	GAAGA	9 cut(s)	71, 97, 159, 239, 247, 331, 352, 551, 605
MflI	RGATCY	4 cut(s)	244, 308, 512, 556
MhlI	GDGCHC	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	690
MmeI	TCCRAC	2 cut(s)	489, 673
MroI	TCCGGA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	5 cut(s)	30, 260, 272, 302, 316
MspR9I	CCNGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	25, 260, 707
NciI	CCSGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
NlaIII	CATG	7 cut(s)	244, 328, 403, 442, 538, 657, 715
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	605
NsbI	TGCGCA	1 cut(s)	668
NspI	RCATGY	2 cut(s)	328, 442
OliI	CACNNNNGTG	1 cut(s)	143
PagI	TCATGA	1 cut(s)	534
PciI	ACATGT	2 cut(s)	324, 438
PciSI	GCTCTTC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	569, 650
PkrI	GCNGC	5 cut(s)	137, 185, 188, 300, 382
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PscI	ACATGT	2 cut(s)	324, 438
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	735
PsuI	RGATCY	4 cut(s)	244, 308, 512, 556
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	15
SalI	GTCGAC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	335
SatI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
Sau3AI	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	603
SgrAI	CRCCGGYG	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	143
SsiI	CCGC	2 cut(s)	252, 299
SspMI	CTAG	2 cut(s)	20, 473
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	4 cut(s)	171, 276, 517, 711
TaaI	ACNGT	2 cut(s)	509, 605
TaqI	TCGA	1 cut(s)	429
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	569, 650
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	4 cut(s)	135, 183, 186, 380
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	7 cut(s)	210, 233, 372, 523, 551, 606, 689
XagI	CCTNNNNNAGG	1 cut(s)	422
XceI	RCATGY	2 cut(s)	328, 442
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	20, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.