Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

18556276 .. 18559279

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1205000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCAAACACAGACACAAGCGTCCCACGCAGTTATATTATTGTGTGGGGGGTCTCCCTCTCTCCTAGCTCAAAACCAACACAACAACGCAACAAGACAGAAGAAAGAAGAAGAAGCAGCGAAAGCAGCTCTACGCATCACCACCAATATAAACGCAAGCTTACAGATCCTCACAGGCTTTTTATTAAAGCACTTTCTTCAAAATCTCTATTTTCTTGTTAGCCGGAAGATGATGAGCATGCTTGGAGTTGAGCGTGATCTGAACCTCCGAGAGACTGAGCTGTGCCTAGGGCTGCCCGGTGGCGGTACTACTACTGTGGCCGAGCCGGAGACTGCCAAGACTACTGGAAAGAGAGGGTTCTCGGAGACCATTGATCTCAAGCTCAACCTTCAGTCCAAGGAAGATCTGAATGACAATGTAAAAAATATTGCTTCCAAGGACAAAAACAACTTTCTTTCTTGCACAAAAGATCCATCAAAGCCTCCAGCCAAGGCACAAGTTGTGGGTTGGCCACCAGTTCGATCATACCGAAAGAACATAATGGCGCAAAAGAATACCAGCGAGGAAAAAACTAAGAAGGCAAGCGGCGGCGGTGGCTGCACCGCCGCGTTTGTGAAGGTTTGCATGGATGGCGCTCCATATCTCCGTAAGGTAGATTTGAAGATGTACAAGAGCTACCAAGAGCTCTCTAATGCCTTAGCCAAGATGTTCAGTTCCTTCACCACCGGTTACTATGGGACCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGTTCTGAGTATGTGCCGACCTATGAAGATAAGGATGGTGATTGGATGCTCGTGGGTGATGTTCCATGGGGGATGTTGGTTGATTCATGCAAGCGCTTGCGAATAATGAAAGGATCAGAAGCAATTGGACTTGCCCCAAAAGCTATGGAGAAATGCAAGGGCAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

321

Amino Acids

35.29

Weight (kDa)

9.21

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	91 - 311	1.3e-86	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
AccII	CGCG	1 cut(s)	608
AciI	CCGC	6 cut(s)	303, 585, 588, 591, 603, 606
AclWI	GGATC	4 cut(s)	160, 464, 789, 913
AcoI	YGGCCR	2 cut(s)	318, 509
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	2 cut(s)	307, 668
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgeI	ACCGGT	1 cut(s)	725
AgsI	TTSAA	2 cut(s)	200, 661
AluBI	AGCT	9 cut(s)	68, 128, 159, 280, 382, 675, 685, 935, 960
AluI	AGCT	9 cut(s)	68, 128, 159, 280, 382, 675, 685, 935, 960
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	4 cut(s)	57, 266, 323, 359
AlwI	GGATC	4 cut(s)	160, 464, 789, 913
AlwNI	CAGNNNCTG	1 cut(s)	960
Aor51HI	AGCGCT	1 cut(s)	887
AoxI	GGCC	2 cut(s)	318, 509
ApeKI	GCWGC	4 cut(s)	116, 125, 292, 597
AsiGI	ACCGGT	1 cut(s)	725
AspA2I	CCTAGG	1 cut(s)	286
AspLEI	GCGC	3 cut(s)	547, 635, 888
AspS9I	GGNCC	1 cut(s)	738
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	4 cut(s)	130, 712, 842, 860
AvaII	GGWCC	1 cut(s)	738
AvrII	CCTAGG	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	687
BauI	CACGAG	1 cut(s)	842
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	4 cut(s)	128, 137, 279, 584
BccI	CCATC	4 cut(s)	481, 623, 772, 821
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	4 cut(s)	57, 266, 323, 359
BfaI	CTAG	2 cut(s)	65, 287
BfoI	RGCGCY	2 cut(s)	636, 889
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	7 cut(s)	117, 126, 293, 586, 589, 598, 606
BlnI	CCTAGG	1 cut(s)	286
BlsI	GCNGC	7 cut(s)	118, 127, 294, 587, 590, 599, 607
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	738
BmgT120I	GGNCC	1 cut(s)	738
BmiI	GGNNCC	2 cut(s)	739, 740
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	144, 828
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	697
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	297
BsaI	GGTCTC	2 cut(s)	57, 359
BsaJI	CCNNGG	6 cut(s)	286, 396, 435, 489, 742, 857
BsaWI	WCCGGW	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	2 cut(s)	349, 515
BseDI	CCNNGG	6 cut(s)	286, 396, 435, 489, 742, 857
BseGI	GGATG	4 cut(s)	634, 832, 843, 870
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	267, 789
BseNI	ACTGG	2 cut(s)	349, 515
BseXI	GCAGC	4 cut(s)	128, 137, 279, 584
BsgI	GTGCAG	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	2 cut(s)	320, 511
BshTI	ACCGGT	1 cut(s)	725
BsiHKAI	GWGCWC	1 cut(s)	687
BsiSI	CCGG	4 cut(s)	223, 297, 326, 726
BslFI	GGGAC	2 cut(s)	7, 751
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	4 cut(s)	57, 266, 323, 359
BsmFI	GGGAC	2 cut(s)	7, 751
BsnI	GGCC	2 cut(s)	320, 511
Bso31I	GGTCTC	2 cut(s)	57, 359
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	8 cut(s)	165, 256, 373, 403, 469, 521, 781, 905
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	6 cut(s)	303, 585, 588, 591, 603, 606
BspANI	GGCC	2 cut(s)	320, 511
BspCNI	CTCAG	2 cut(s)	268, 790
BspFNI	CGCG	1 cut(s)	608
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	2 cut(s)	739, 740
BspPI	GGATC	4 cut(s)	160, 464, 789, 913
BspTNI	GGTCTC	2 cut(s)	57, 359
BsrFI	RCCGGY	1 cut(s)	725
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	349, 515
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	6 cut(s)	286, 396, 435, 489, 742, 857
BssMI	GATC	8 cut(s)	165, 256, 373, 403, 469, 521, 781, 905
BssSI	CACGAG	1 cut(s)	842
BssT1I	CCWWGG	6 cut(s)	286, 396, 435, 489, 742, 857
Bst2BI	CACGAG	1 cut(s)	842
Bst4CI	ACNGT	2 cut(s)	316, 794
BstAUI	TGTACA	1 cut(s)	666
BstC8I	GCNNGC	5 cut(s)	157, 239, 583, 884, 890
BstDEI	CTNAG	4 cut(s)	276, 573, 697, 798
BstDSI	CCRYGG	1 cut(s)	857
BstF5I	GGATG	4 cut(s)	634, 832, 843, 870
BstFNI	CGCG	1 cut(s)	608
BstH2I	RGCGCY	2 cut(s)	636, 889
BstHHI	GCGC	3 cut(s)	547, 635, 888
BstKTI	GATC	8 cut(s)	168, 259, 376, 406, 472, 524, 784, 908
BstMAI	GTCTC	4 cut(s)	57, 266, 323, 359
BstMBI	GATC	8 cut(s)	165, 256, 373, 403, 469, 521, 781, 905
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 122, 125, 594, 597, 630, 932
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	295
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	4 cut(s)	128, 137, 279, 584
BstX2I	RGATCY	4 cut(s)	165, 403, 469, 781
BstYI	RGATCY	4 cut(s)	165, 403, 469, 781
BsuRI	GGCC	2 cut(s)	320, 511
BtgI	CCRYGG	1 cut(s)	857
BtsCI	GGATG	4 cut(s)	634, 832, 843, 870
Cac8I	GCNNGC	5 cut(s)	157, 239, 583, 884, 890
CaiI	CAGNNNCTG	1 cut(s)	960
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	3 cut(s)	547, 635, 888
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	1 cut(s)	738
CseI	GACGC	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	306, 667
CspAI	ACCGGT	1 cut(s)	725
CviAII	CATG	5 cut(s)	238, 625, 760, 858, 879
CviQI	GTAC	2 cut(s)	306, 667
DdeI	CTNAG	4 cut(s)	276, 573, 697, 798
DpnI	GATC	8 cut(s)	167, 258, 375, 405, 471, 523, 783, 907
DpnII	GATC	8 cut(s)	165, 256, 373, 403, 469, 521, 781, 905
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	2 cut(s)	318, 509
Ecl136II	GAGCTC	1 cut(s)	685
Eco130I	CCWWGG	6 cut(s)	286, 396, 435, 489, 742, 857
Eco24I	GRGCYC	1 cut(s)	687
Eco31I	GGTCTC	2 cut(s)	57, 359
Eco47I	GGWCC	1 cut(s)	738
Eco47III	AGCGCT	1 cut(s)	887
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	738
EcoT14I	CCWWGG	6 cut(s)	286, 396, 435, 489, 742, 857
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	6 cut(s)	286, 396, 435, 489, 742, 857
FaeI	CATG	5 cut(s)	241, 628, 763, 861, 882
FaqI	GGGAC	2 cut(s)	7, 751
FatI	CATG	5 cut(s)	237, 624, 759, 857, 878
Fnu4HI	GCNGC	7 cut(s)	117, 126, 293, 586, 589, 598, 606
FokI	GGATG	4 cut(s)	641, 839, 850, 877
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	7 cut(s)	117, 126, 293, 586, 589, 598, 606
FspBI	CTAG	2 cut(s)	65, 287
GlaI	GCGC	3 cut(s)	546, 634, 887
GluI	GCNGC	7 cut(s)	117, 126, 293, 586, 589, 598, 606
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	2 cut(s)	636, 889
HaeIII	GGCC	2 cut(s)	320, 511
HapII	CCGG	4 cut(s)	223, 297, 326, 726
HgaI	GACGC	1 cut(s)	9
HhaI	GCGC	3 cut(s)	547, 635, 888
Hin1II	CATG	5 cut(s)	241, 628, 763, 861, 882
Hin6I	GCGC	3 cut(s)	545, 633, 886
HinP1I	GCGC	3 cut(s)	545, 633, 886
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	1 cut(s)	875
HpaII	CCGG	4 cut(s)	223, 297, 326, 726
HphI	GGTGA	4 cut(s)	130, 712, 842, 860
Hpy188I	TCNGA	6 cut(s)	261, 269, 364, 408, 799, 910
Hpy188III	TCNNGA	1 cut(s)	760
HpyAV	CCTTC	4 cut(s)	398, 571, 610, 727
HpyCH4III	ACNGT	2 cut(s)	316, 794
HpyCH4V	TGCA	6 cut(s)	4, 462, 600, 624, 882, 948
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 122, 125, 594, 597, 630, 932
HpyF3I	CTNAG	4 cut(s)	276, 573, 697, 798
Hsp92II	CATG	5 cut(s)	241, 628, 763, 861, 882
HspAI	GCGC	3 cut(s)	545, 633, 886
KflI	GGGWCCC	1 cut(s)	738
Kzo9I	GATC	8 cut(s)	165, 256, 373, 403, 469, 521, 781, 905
LmnI	GCTCC	1 cut(s)	640
LpnPI	CCDG	9 cut(s)	159, 236, 310, 330, 339, 498, 528, 571, 739
Lsp1109I	GCAGC	4 cut(s)	128, 137, 279, 584
LweI	GCATC	2 cut(s)	144, 828
MaeI	CTAG	2 cut(s)	65, 287
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	8 cut(s)	167, 258, 375, 405, 471, 523, 783, 907
MboI	GATC	8 cut(s)	165, 256, 373, 403, 469, 521, 781, 905
MboII	GAAGA	9 cut(s)	112, 119, 122, 188, 238, 413, 673, 776, 830
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	4 cut(s)	165, 403, 469, 781
MhlI	GDGCHC	1 cut(s)	687
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	1 cut(s)	915
MluNI	TGGCCA	1 cut(s)	511
MnlI	CCTC	6 cut(s)	67, 179, 275, 347, 492, 556
Mox20I	TGGCCA	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	2 cut(s)	185, 789
Msp20I	TGGCCA	1 cut(s)	511
MspI	CCGG	4 cut(s)	223, 297, 326, 726
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	915
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	7 cut(s)	26, 122, 125, 594, 597, 630, 932
NciI	CCSGG	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	8 cut(s)	165, 256, 373, 403, 469, 521, 781, 905
NlaIII	CATG	5 cut(s)	241, 628, 763, 861, 882
NlaIV	GGNNCC	2 cut(s)	739, 740
NmeAIII	GCCGAG	1 cut(s)	346
NspI	RCATGY	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	241
PagI	TCATGA	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	875
PinAI	ACCGGT	1 cut(s)	725
PkrI	GCNGC	7 cut(s)	118, 127, 294, 587, 590, 599, 607
PpuMI	RGGWCCY	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	687
Psp5II	RGGWCCY	1 cut(s)	738
PspN4I	GGNNCC	2 cut(s)	739, 740
PspPI	GGNCC	1 cut(s)	738
PspPPI	RGGWCCY	1 cut(s)	738
PstNI	CAGNNNCTG	1 cut(s)	960
PsuI	RGATCY	4 cut(s)	165, 403, 469, 781
RsaI	GTAC	2 cut(s)	307, 668
RsaNI	GTAC	2 cut(s)	306, 667
SacI	GAGCTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	185, 789
SatI	GCNGC	7 cut(s)	117, 126, 293, 586, 589, 598, 606
Sau3AI	GATC	8 cut(s)	165, 256, 373, 403, 469, 521, 781, 905
Sau96I	GGNCC	1 cut(s)	738
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	2 cut(s)	144, 828
SinI	GGWCC	1 cut(s)	738
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	241
Sse9I	AATT	1 cut(s)	915
SsiI	CCGC	6 cut(s)	303, 585, 588, 591, 603, 606
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	2 cut(s)	65, 287
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	6 cut(s)	286, 396, 435, 489, 742, 857
TaaI	ACNGT	2 cut(s)	316, 794
TaqI	TCGA	1 cut(s)	520
TasI	AATT	1 cut(s)	915
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	3 cut(s)	588, 591, 608
TfiI	GAWTC	1 cut(s)	875
Tru1I	TTAA	2 cut(s)	185, 789
Tru9I	TTAA	2 cut(s)	185, 789
TseI	GCWGC	4 cut(s)	116, 125, 292, 597
TspDTI	ATGAA	5 cut(s)	748, 776, 831, 867, 914
TspGWI	ACGGA	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	738
XceI	RCATGY	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	286
XspI	CTAG	2 cut(s)	65, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.