Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

8194606 .. 8197161

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATCGGCCAACTTATGAACCTCAAGGCCACGGAGCTCTGTCTCGGCCTCCCCGGCGGCGCTGAAGCAGTTGAGAGTCCTGCCAAATCGGCGGTGGGAAGCAAGAGAGGCTTCTCCGAAACCGTTGATCTCATGCTCAATCTTCAATCTAACAAAGAAGGCTCCGTTGATCTCAAAAACGTTTCTGCTGTTCCCAAGGAGAAGACTACCCTTAAAGATCCTTCTAAGCCTCCTGCTAAAGCACAAGTGGTGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATGATGACTCAGCAGAAGACCAGTAGTGGTGCGGAGGAGGCCAGCAGTGAGAAGGCCGGGAACTTTGGTGGAGGAGCAGCCGGAGCCGGCTTGGTGAAGGTCTCCATGGACGGTGCTCCATATCTGAGGAAAGTTGACCTCAAGATGTACAAAAGCTACCAGGATCTTTCTGATGCATTGGCCAAAATGTTCAGCTCCTTTACTATGGGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAAGCTAATGAATCTGCTGAATAGCTCTGAGTATGTGCCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGTTGGCGATGTCCCATGGGAAATGTTTGTCGAGTCTTGCAAACGTTTGCGCATTATGAAGGGATCTGAAGCAGTTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAGAACAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

243

Amino Acids

26.38

Weight (kDa)

8.79

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	10 - 166	1.1e-44	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	659
AciI	CCGC	3 cut(s)	57, 92, 317
AclI	AACGTT	2 cut(s)	180, 652
AclWI	GGATC	3 cut(s)	212, 456, 679
AcoI	YGGCCR	3 cut(s)	7, 257, 465
AcuI	CTGAAG	2 cut(s)	84, 696
AfaI	GTAC	2 cut(s)	434, 713
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	6 cut(s)	37, 441, 480, 541, 561, 579
AluI	AGCT	6 cut(s)	37, 441, 480, 541, 561, 579
Alw21I	GWGCWC	3 cut(s)	39, 403, 508
Alw26I	GTCTC	2 cut(s)	47, 391
AlwI	GGATC	3 cut(s)	212, 456, 679
AoxI	GGCC	7 cut(s)	7, 27, 46, 257, 324, 339, 465
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	62, 660
AsuC2I	CCSGG	2 cut(s)	54, 343
AsuHPI	GGTGA	2 cut(s)	391, 608
BalI	TGGCCA	2 cut(s)	259, 467
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	2 cut(s)	209, 308
Bbv12I	GWGCWC	3 cut(s)	39, 403, 508
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	2 cut(s)	249, 587
BciT130I	CCWGG	1 cut(s)	446
BcnI	CCSGG	2 cut(s)	54, 343
BcoDI	GTCTC	2 cut(s)	47, 391
BfmI	CTRYAG	1 cut(s)	274
BfoI	RGCGCY	1 cut(s)	63
BglI	GCCNNNNNGGC	2 cut(s)	54, 89
BglII	AGATCT	1 cut(s)	725
BisI	GCNGC	2 cut(s)	58, 363
BlsI	GCNGC	2 cut(s)	59, 364
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	3 cut(s)	54, 343, 446
BmiI	GGNNCC	2 cut(s)	163, 370
BmrFI	CCNGG	3 cut(s)	54, 343, 446
BmsI	GCATC	2 cut(s)	448, 594
BpiI	GAAGAC	2 cut(s)	209, 308
BpuEI	CTTGAG	2 cut(s)	8, 410
BpuMI	CCSGG	2 cut(s)	54, 343
BsaI	GGTCTC	1 cut(s)	391
BsaJI	CCNNGG	5 cut(s)	30, 52, 195, 390, 623
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	306, 605
Bse3DI	GCAATG	1 cut(s)	708
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	5 cut(s)	30, 52, 195, 390, 623
BseGI	GGATG	2 cut(s)	260, 609
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	3 cut(s)	308, 401, 555
BseNI	ACTGG	2 cut(s)	306, 605
BseRI	GAGGAG	2 cut(s)	335, 372
BseXI	GCAGC	1 cut(s)	374
BshFI	GGCC	7 cut(s)	9, 29, 48, 259, 326, 341, 467
BsiHKAI	GWGCWC	3 cut(s)	39, 403, 508
BsiSI	CCGG	4 cut(s)	54, 342, 366, 372
BslFI	GGGAC	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	47, 391
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	7 cut(s)	9, 29, 48, 259, 326, 341, 467
Bso31I	GGTCTC	1 cut(s)	391
Bsp1286I	GDGCHC	3 cut(s)	39, 403, 508
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	7 cut(s)	3, 127, 169, 217, 448, 671, 725
Bsp19I	CCATGG	2 cut(s)	390, 623
BspACI	CCGC	3 cut(s)	57, 92, 317
BspANI	GGCC	7 cut(s)	9, 29, 48, 259, 326, 341, 467
BspCNI	CTCAG	3 cut(s)	307, 402, 556
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	163, 370
BspPI	GGATC	3 cut(s)	212, 456, 679
BspTNI	GGTCTC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	306, 605
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	5 cut(s)	30, 52, 195, 390, 623
BssMI	GATC	7 cut(s)	3, 127, 169, 217, 448, 671, 725
BssT1I	CCWWGG	3 cut(s)	195, 390, 623
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	124, 398
BstAUI	TGTACA	1 cut(s)	432
BstC8I	GCNNGC	3 cut(s)	328, 373, 539
BstDEI	CTNAG	4 cut(s)	225, 294, 410, 564
BstDSI	CCRYGG	3 cut(s)	30, 390, 623
BstF5I	GGATG	2 cut(s)	260, 609
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	62, 660
BstKTI	GATC	7 cut(s)	6, 130, 172, 220, 451, 674, 728
BstMAI	GTCTC	2 cut(s)	47, 391
BstMBI	GATC	7 cut(s)	3, 127, 169, 217, 448, 671, 725
BstMWI	GCNNNNNNNGC	6 cut(s)	54, 89, 108, 323, 368, 698
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	52, 341, 444
BstSFI	CTRYAG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	2 cut(s)	209, 308
BstX2I	RGATCY	4 cut(s)	217, 448, 671, 725
BstYI	RGATCY	4 cut(s)	217, 448, 671, 725
BsuRI	GGCC	7 cut(s)	9, 29, 48, 259, 326, 341, 467
BtgI	CCRYGG	3 cut(s)	30, 390, 623
BtgZI	GCGATG	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	260, 609
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	328, 373, 539
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	2 cut(s)	62, 660
Cfr10I	RCCGGY	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	433, 712
CviAII	CATG	5 cut(s)	133, 286, 391, 526, 624
CviQI	GTAC	2 cut(s)	433, 712
DdeI	CTNAG	4 cut(s)	225, 294, 410, 564
DpnI	GATC	7 cut(s)	5, 129, 171, 219, 450, 673, 727
DpnII	GATC	7 cut(s)	3, 127, 169, 217, 448, 671, 725
EaeI	YGGCCR	3 cut(s)	7, 257, 465
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	195, 390, 623
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	84, 696
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	3 cut(s)	195, 390, 623
EcoT22I	ATGCAT	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	195, 390, 623
FaeI	CATG	5 cut(s)	136, 289, 394, 529, 627
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	5 cut(s)	132, 285, 390, 525, 623
Fnu4HI	GCNGC	2 cut(s)	58, 363
FokI	GGATG	2 cut(s)	267, 616
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	58, 363
FspI	TGCGCA	1 cut(s)	659
GlaI	GCGC	2 cut(s)	61, 659
GluI	GCNGC	2 cut(s)	58, 363
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	7 cut(s)	9, 29, 48, 259, 326, 341, 467
HapII	CCGG	4 cut(s)	54, 342, 366, 372
HhaI	GCGC	2 cut(s)	62, 660
Hin1II	CATG	5 cut(s)	136, 289, 394, 529, 627
Hin6I	GCGC	2 cut(s)	60, 658
HinP1I	GCGC	2 cut(s)	60, 658
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	4 cut(s)	76, 292, 547, 641
HpaII	CCGG	4 cut(s)	54, 342, 366, 372
HphI	GGTGA	2 cut(s)	391, 608
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	6 cut(s)	118, 411, 457, 565, 676, 696
Hpy188III	TCNNGA	3 cut(s)	427, 526, 729
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	5 cut(s)	152, 231, 331, 376, 661
HpyCH4III	ACNGT	2 cut(s)	124, 398
HpyCH4IV	ACGT	2 cut(s)	180, 652
HpyCH4V	TGCA	3 cut(s)	461, 648, 717
HpyF10VI	GCNNNNNNNGC	6 cut(s)	54, 89, 108, 323, 368, 698
HpyF3I	CTNAG	4 cut(s)	225, 294, 410, 564
HpySE526I	ACGT	2 cut(s)	180, 652
Hsp92II	CATG	5 cut(s)	136, 289, 394, 529, 627
HspAI	GCGC	2 cut(s)	60, 658
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	7 cut(s)	3, 127, 169, 217, 448, 671, 725
LmnI	GCTCC	8 cut(s)	34, 167, 359, 368, 406, 485, 503, 697
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	2 cut(s)	448, 594
MaeII	ACGT	2 cut(s)	180, 652
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	7 cut(s)	5, 129, 171, 219, 450, 673, 727
MboI	GATC	7 cut(s)	3, 127, 169, 217, 448, 671, 725
MboII	GAAGA	4 cut(s)	134, 214, 292, 313
MflI	RGATCY	4 cut(s)	217, 448, 671, 725
MhlI	GDGCHC	3 cut(s)	39, 403, 508
MlsI	TGGCCA	2 cut(s)	259, 467
MluNI	TGGCCA	2 cut(s)	259, 467
MlyI	GAGTC	3 cut(s)	85, 286, 650
MmeI	TCCRAC	1 cut(s)	664
Mox20I	TGGCCA	2 cut(s)	259, 467
Mph1103I	ATGCAT	1 cut(s)	463
MroNI	GCCGGC	1 cut(s)	371
MscI	TGGCCA	2 cut(s)	259, 467
MseI	TTAA	1 cut(s)	213
Msp20I	TGGCCA	2 cut(s)	259, 467
MspI	CCGG	4 cut(s)	54, 342, 366, 372
MspR9I	CCNGG	3 cut(s)	54, 343, 446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	6 cut(s)	54, 89, 108, 323, 368, 698
NaeI	GCCGGC	1 cut(s)	373
NciI	CCSGG	2 cut(s)	54, 343
NcoI	CCATGG	2 cut(s)	390, 623
NdeII	GATC	7 cut(s)	3, 127, 169, 217, 448, 671, 725
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	5 cut(s)	136, 289, 394, 529, 627
NlaIV	GGNNCC	2 cut(s)	163, 370
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	596
NsbI	TGCGCA	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	463
PagI	TCATGA	1 cut(s)	525
PdiI	GCCGGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	59, 364
PleI	GAGTC	3 cut(s)	84, 286, 649
PpsI	GAGTC	3 cut(s)	84, 286, 649
Psp124BI	GAGCTC	1 cut(s)	39
Psp1406I	AACGTT	2 cut(s)	180, 652
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	163, 370
PsuI	RGATCY	4 cut(s)	217, 448, 671, 725
RsaI	GTAC	2 cut(s)	434, 713
RsaNI	GTAC	2 cut(s)	433, 712
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	58, 363
Sau3AI	GATC	7 cut(s)	3, 127, 169, 217, 448, 671, 725
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	3 cut(s)	85, 286, 650
ScrFI	CCNGG	3 cut(s)	54, 343, 446
SduI	GDGCHC	3 cut(s)	39, 403, 508
SfaNI	GCATC	2 cut(s)	448, 594
SfcI	CTRYAG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	23, 425
SmoI	CTYRAG	2 cut(s)	23, 425
SsiI	CCGC	3 cut(s)	57, 92, 317
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	3 cut(s)	52, 341, 444
StyI	CCWWGG	3 cut(s)	195, 390, 623
TaaI	ACNGT	2 cut(s)	124, 398
TaiI	ACGT	2 cut(s)	183, 655
TaqI	TCGA	1 cut(s)	639
TatI	WGTACW	2 cut(s)	432, 711
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	5 cut(s)	32, 514, 542, 560, 680
TspGWI	ACGGA	2 cut(s)	47, 154
TspRI	CASTG	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
ZrmI	AGTACT	1 cut(s)	713
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.