Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Reverse (-)

50991654 .. 50993809

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGACAGAGCTCAGGCTAGGGTTGCCCGGAGGAGGAGGAGGAGGAGGTGGTGAAGGAGAAGATCAGGTGGTGGTGATGATGAGGAAGAGAGGCTTCTCTGAAACCGAGAGTGAGATCACTACTGATGATGAGAGCAGCACTTGTGTGGATTTGAAGCTGAAACTTTCTTCCAAGGATGGTAGCAGCAGCACTAATGAAAAGTCCAAGAGCTTGATGATGAACAAGAACAAGGAGAAGAACATGGATCTTCCCGCCGATCCGGCAAAGCCTCCGGCCAAGGCACAAGTAGTGGGTTGGCCGCCGGTGAGATCCTTCCGGAAGAACATGTTGAGCGCACAGAAGAGCAGTTCTACTGATGAAAGCAAGGCTGGAGGAAATGCAGCTTTGGTGAAGGTGAGCATGGATGGTGCGCCTTACCTCCGAAAGGTCGACCTGAACATGTACAAGACTTACCCTCAGCTCTCCGACGCCCTAGCCAAAATGTTCAGCTCGTTCACCATTGGTAACTGTGGATCCCAAGGAACGATTGATTTCATGAATGAGAGGAAGCTGATGGATCTTCTCAATGATTCTGATTACATCCCAACTTATGAAGACAAGGACGGTGACTGGATGCTTGTTGGTGATGTCCCGTGGGAGATGTTTGTTGAATCATGCAAGAGACTGCGCATAATGAAGGGAAAGGAGGCTGTTGGACTCGCACCAAGAGCCATGGAGAAATGCAAGAACAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

246

Amino Acids

26.97

Weight (kDa)

6.46

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	2 - 237	4.8e-85	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	671
AccI	GTMKAC	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	318
AciI	CCGC	2 cut(s)	255, 302
AclWI	GGATC	6 cut(s)	254, 255, 306, 510, 523, 567
AcoI	YGGCCR	2 cut(s)	276, 299
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	35, 427
AflIII	ACRYGT	2 cut(s)	327, 441
AgsI	TTSAA	2 cut(s)	157, 653
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	8 cut(s)	13, 160, 213, 386, 463, 492, 553, 738
AluI	AGCT	8 cut(s)	13, 160, 213, 386, 463, 492, 553, 738
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	6 cut(s)	254, 255, 306, 510, 523, 567
AlwNI	CAGNNNCTG	1 cut(s)	738
Aor13HI	TCCGGA	1 cut(s)	318
AoxI	GGCC	2 cut(s)	276, 299
ApeKI	GCWGC	4 cut(s)	138, 186, 189, 383
AspLEI	GCGC	3 cut(s)	338, 415, 672
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	8 cut(s)	65, 88, 319, 403, 409, 490, 620, 638
BamHI	GGATCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	150, 198, 201, 395
BccI	CCATC	3 cut(s)	173, 401, 550
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	2 cut(s)	20, 476
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	5 cut(s)	139, 187, 190, 302, 384
BlsI	GCNGC	5 cut(s)	140, 188, 191, 303, 385
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	2 cut(s)	14, 459
BpuMI	CCSGG	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	5 cut(s)	174, 279, 520, 635, 714
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 427
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	617
BseAI	TCCGGA	1 cut(s)	318
BseDI	CCNNGG	5 cut(s)	174, 279, 520, 635, 714
BseGI	GGATG	4 cut(s)	184, 412, 582, 621
BseLI	CCNNNNNNNGG	2 cut(s)	35, 427
BseMII	CTCAG	2 cut(s)	28, 473
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	5 cut(s)	48, 51, 54, 57, 60
BseXI	GCAGC	4 cut(s)	150, 198, 201, 395
BshFI	GGCC	2 cut(s)	278, 301
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	30, 263, 275, 305, 319
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	2 cut(s)	35, 427
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	278, 301
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	318
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	2 cut(s)	255, 302
BspANI	GGCC	2 cut(s)	278, 301
BspCNI	CTCAG	2 cut(s)	27, 472
BspEI	TCCGGA	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	6 cut(s)	254, 255, 306, 510, 523, 567
BspQI	GCTCTTC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	304
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	617
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	5 cut(s)	174, 279, 520, 635, 714
BssMI	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
BssNI	GRCGYC	1 cut(s)	471
BssT1I	CCWWGG	4 cut(s)	174, 279, 520, 714
Bst4CI	ACNGT	2 cut(s)	512, 608
Bst6I	CTCTTC	2 cut(s)	83, 338
BstACI	GRCGYC	1 cut(s)	471
BstAUI	TGTACA	1 cut(s)	444
BstDEI	CTNAG	2 cut(s)	14, 459
BstDSI	CCRYGG	2 cut(s)	635, 714
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	4 cut(s)	184, 412, 582, 621
BstHHI	GCGC	3 cut(s)	338, 415, 672
BstKTI	GATC	7 cut(s)	67, 120, 250, 262, 314, 518, 562
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 263, 710
BstNSI	RCATGY	2 cut(s)	331, 445
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	4 cut(s)	150, 198, 201, 395
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	4 cut(s)	247, 311, 515, 559
BstYI	RGATCY	4 cut(s)	247, 311, 515, 559
BsuRI	GGCC	2 cut(s)	278, 301
BtgI	CCRYGG	2 cut(s)	635, 714
BtsCI	GGATG	4 cut(s)	184, 412, 582, 621
CaiI	CAGNNNCTG	1 cut(s)	738
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	3 cut(s)	338, 415, 672
Cfr10I	RCCGGY	1 cut(s)	304
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	7 cut(s)	244, 328, 403, 442, 538, 657, 715
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	14, 459
DpnI	GATC	7 cut(s)	66, 119, 249, 261, 313, 517, 561
DpnII	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
EaeI	YGGCCR	2 cut(s)	276, 299
Eam1104I	CTCTTC	2 cut(s)	83, 338
EarI	CTCTTC	2 cut(s)	83, 338
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	4 cut(s)	174, 279, 520, 714
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoT14I	CCWWGG	4 cut(s)	174, 279, 520, 714
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	4 cut(s)	174, 279, 520, 714
FaeI	CATG	7 cut(s)	247, 331, 406, 445, 541, 660, 718
FaiI	YATR	9 cut(s)	245, 329, 404, 443, 539, 594, 658, 674, 716
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	7 cut(s)	243, 327, 402, 441, 537, 656, 714
FauI	CCCGC	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	5 cut(s)	139, 187, 190, 302, 384
FokI	GGATG	4 cut(s)	191, 419, 569, 628
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	5 cut(s)	139, 187, 190, 302, 384
FspBI	CTAG	2 cut(s)	20, 476
FspI	TGCGCA	1 cut(s)	671
GlaI	GCGC	3 cut(s)	337, 414, 671
GluI	GCNGC	5 cut(s)	139, 187, 190, 302, 384
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	278, 301
HapII	CCGG	5 cut(s)	30, 263, 275, 305, 319
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	3 cut(s)	338, 415, 672
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	7 cut(s)	247, 331, 406, 445, 541, 660, 718
Hin6I	GCGC	3 cut(s)	336, 413, 670
HinP1I	GCGC	3 cut(s)	336, 413, 670
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	3 cut(s)	572, 653, 699
HpaII	CCGG	5 cut(s)	30, 263, 275, 305, 319
HphI	GGTGA	8 cut(s)	65, 88, 319, 403, 409, 490, 620, 638
Hpy166II	GTNNAC	2 cut(s)	433, 498
Hpy188I	TCNGA	4 cut(s)	103, 425, 469, 577
Hpy188III	TCNNGA	2 cut(s)	319, 538
Hpy8I	GTNNAC	2 cut(s)	433, 498
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	4 cut(s)	50, 325, 388, 673
HpyCH4III	ACNGT	2 cut(s)	512, 608
HpyCH4V	TGCA	3 cut(s)	383, 660, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 263, 710
HpyF3I	CTNAG	2 cut(s)	14, 459
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	7 cut(s)	247, 331, 406, 445, 541, 660, 718
HspAI	GCGC	3 cut(s)	336, 413, 670
Kpn2I	TCCGGA	1 cut(s)	318
Kzo9I	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
LguI	GCTCTTC	1 cut(s)	338
LpnPI	CCDG	9 cut(s)	43, 53, 276, 288, 318, 332, 357, 449, 598
Lsp1109I	GCAGC	4 cut(s)	150, 198, 201, 395
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	2 cut(s)	20, 476
MaeIII	GTNAC	2 cut(s)	506, 608
MalI	GATC	7 cut(s)	66, 119, 249, 261, 313, 517, 561
MboI	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
MboII	GAAGA	9 cut(s)	74, 100, 162, 242, 250, 334, 355, 554, 608
MflI	RGATCY	4 cut(s)	247, 311, 515, 559
MhlI	GDGCHC	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	693
MmeI	TCCRAC	2 cut(s)	492, 676
MroI	TCCGGA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	5 cut(s)	30, 263, 275, 305, 319
MspR9I	CCNGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	25, 263, 710
NciI	CCSGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	714
NdeII	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
NlaIII	CATG	7 cut(s)	247, 331, 406, 445, 541, 660, 718
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	608
NsbI	TGCGCA	1 cut(s)	671
NspI	RCATGY	2 cut(s)	331, 445
OliI	CACNNNNGTG	1 cut(s)	146
PagI	TCATGA	1 cut(s)	537
PciI	ACATGT	2 cut(s)	327, 441
PciSI	GCTCTTC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	572, 653
PkrI	GCNGC	5 cut(s)	140, 188, 191, 303, 385
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
PscI	ACATGT	2 cut(s)	327, 441
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	738
PsuI	RGATCY	4 cut(s)	247, 311, 515, 559
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	15
SalI	GTCGAC	1 cut(s)	431
SapI	GCTCTTC	1 cut(s)	338
SatI	GCNGC	5 cut(s)	139, 187, 190, 302, 384
Sau3AI	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
SchI	GAGTC	1 cut(s)	693
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	606
SgrAI	CRCCGGYG	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	146
SsiI	CCGC	2 cut(s)	255, 302
SspMI	CTAG	2 cut(s)	20, 476
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	4 cut(s)	174, 279, 520, 714
TaaI	ACNGT	2 cut(s)	512, 608
TaqI	TCGA	1 cut(s)	432
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	572, 653
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	4 cut(s)	138, 186, 189, 383
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	7 cut(s)	213, 236, 375, 526, 554, 609, 692
XagI	CCTNNNNNAGG	1 cut(s)	425
XceI	RCATGY	2 cut(s)	331, 445
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	20, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.