Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

1933812 .. 1936072

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G027600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCAGCATCTGCTGTTAGCCGCAAGATGCCGAACATGCTCGGGGTCGAGCGCGATCTGAATCTCAAAGAGACTGAGCTGTGCCTTGGTTTGCCTGGCGGGGGCACTGTGCCTGAGCCAGAGACTCCCAGGGCTACTGGAAAGAGAGGCTTCTCTGAGACCATTGATCTCAAACTGAACCTTCAGTCCAAGGAAGATCTGAACGACAACGTCAAAAATATTGCTTCCAAGGAAAAAAACAACCTCCTGACTTGCACAAAAGATCCAGCAAAGCCACCAGCTAAGGCACAAGTTGTGGGTTGGCCACCAGTGCGATCATACCGGAAGAACATAATGGCGCAGAAGAGCAGCAGCGAGGAGAGCACTGAGAAGGGAAGCGGCTGCAGCGCGGCGTTTGTGAAGGTTTGCATGGATGGTGCTCCATATCTTCGTAAGGTGGATTTGAAGATGTACAAGAGCTACCAAGAGCTGTCTAATTCCTTGGCCAAGATGTTCAGTTCCTTCACCATGGGTTACTATGGGGCCCAAGGAATGATAGATTTCATGAATGAGAGCAAGTTGATGGATCTACTAAACAGTTCTGAGTATGTGCCAACCTATGAGGATAAGGATGGCGATTGGATGCTCGTGGGTGATGTTCCGTGGGAGATGTTTGTTGATTCATGCAAGCGCCTGCGAATAATGAAAGGATCAGAAGCAATTGGACTTGCTCCAAGGGCTATGGAGAAATGCAAAAACAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

249

Amino Acids

27.5

Weight (kDa)

8.61

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	54, 389
AciI	CCGC	4 cut(s)	22, 99, 378, 389
AclWI	GGATC	3 cut(s)	257, 573, 697
AcoI	YGGCCR	2 cut(s)	302, 483
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	94, 128
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	5 cut(s)	79, 281, 459, 469, 744
AluI	AGCT	5 cut(s)	79, 281, 459, 469, 744
Alw21I	GWGCWC	2 cut(s)	365, 421
Alw26I	GTCTC	3 cut(s)	65, 116, 152
AlwI	GGATC	3 cut(s)	257, 573, 697
AlwNI	CAGNNNCTG	2 cut(s)	11, 744
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	3 cut(s)	302, 483, 522
ApaI	GGGCCC	1 cut(s)	526
ApeKI	GCWGC	5 cut(s)	5, 348, 351, 381, 384
AspLEI	GCGC	4 cut(s)	54, 340, 389, 672
AspS9I	GGNCC	2 cut(s)	522, 523
AsuHPI	GGTGA	2 cut(s)	496, 644
AvaI	CYCGRG	1 cut(s)	41
BaeGI	GKGCMC	2 cut(s)	107, 526
BalI	TGGCCA	2 cut(s)	304, 485
BanII	GRGCYC	1 cut(s)	526
BauI	CACGAG	1 cut(s)	626
Bbv12I	GWGCWC	2 cut(s)	365, 421
BbvI	GCAGC	5 cut(s)	17, 360, 363, 368, 396
BccI	CCATC	3 cut(s)	407, 556, 605
BciT130I	CCWGG	2 cut(s)	96, 130
BcoDI	GTCTC	3 cut(s)	65, 116, 152
BfmI	CTRYAG	1 cut(s)	382
BfoI	RGCGCY	1 cut(s)	673
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	8 cut(s)	6, 22, 349, 352, 379, 382, 385, 390
BlsI	GCNGC	8 cut(s)	7, 23, 350, 353, 380, 383, 386, 391
Bme1390I	CCNGG	2 cut(s)	96, 130
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	522, 523
BmiI	GGNNCC	2 cut(s)	523, 524
BmrFI	CCNGG	2 cut(s)	96, 130
BmsI	GCATC	3 cut(s)	17, 18, 612
Bpu10I	CCTNAGC	2 cut(s)	114, 282
BsaBI	GATNNNNATC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	142, 308
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	96, 130
BseGI	GGATG	3 cut(s)	418, 616, 627
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	5 cut(s)	66, 105, 147, 357, 573
BseNI	ACTGG	2 cut(s)	142, 308
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	2 cut(s)	107, 526
BseXI	GCAGC	5 cut(s)	17, 360, 363, 368, 396
Bsh1236I	CGCG	2 cut(s)	54, 389
BshFI	GGCC	3 cut(s)	304, 485, 524
BsiHKAI	GWGCWC	2 cut(s)	365, 421
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	3 cut(s)	65, 116, 152
BsnI	GGCC	3 cut(s)	304, 485, 524
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	41
Bsp120I	GGGCCC	1 cut(s)	522
Bsp1286I	GDGCHC	4 cut(s)	107, 365, 421, 526
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	7 cut(s)	55, 166, 196, 262, 314, 565, 689
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	4 cut(s)	22, 99, 378, 389
BspANI	GGCC	3 cut(s)	304, 485, 524
BspCNI	CTCAG	5 cut(s)	67, 106, 148, 358, 574
BspFNI	CGCG	2 cut(s)	54, 389
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	2 cut(s)	523, 524
BspMAI	CTGCAG	1 cut(s)	386
BspPI	GGATC	3 cut(s)	257, 573, 697
BspQI	GCTCTTC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	152
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	142, 308
BssMI	GATC	7 cut(s)	55, 166, 196, 262, 314, 565, 689
BssSI	CACGAG	1 cut(s)	626
BssT1I	CCWWGG	7 cut(s)	85, 189, 228, 480, 507, 526, 713
Bst2BI	CACGAG	1 cut(s)	626
Bst2UI	CCWGG	2 cut(s)	96, 130
Bst4CI	ACNGT	2 cut(s)	109, 578
Bst6I	CTCTTC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	668, 674
BstDEI	CTNAG	6 cut(s)	75, 114, 156, 282, 366, 582
BstDSI	CCRYGG	2 cut(s)	507, 641
BstF5I	GGATG	3 cut(s)	418, 616, 627
BstFNI	CGCG	2 cut(s)	54, 389
BstH2I	RGCGCY	1 cut(s)	673
BstHHI	GCGC	4 cut(s)	54, 340, 389, 672
BstKTI	GATC	7 cut(s)	58, 169, 199, 265, 317, 568, 692
BstMAI	GTCTC	3 cut(s)	65, 116, 152
BstMBI	GATC	7 cut(s)	55, 166, 196, 262, 314, 565, 689
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 37, 310, 360, 384, 716
BstNI	CCWGG	2 cut(s)	96, 130
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	94, 128
BstSFI	CTRYAG	1 cut(s)	382
BstSLI	GKGCMC	2 cut(s)	107, 526
BstUI	CGCG	2 cut(s)	54, 389
BstV1I	GCAGC	5 cut(s)	17, 360, 363, 368, 396
BstX2I	RGATCY	3 cut(s)	196, 262, 565
BstYI	RGATCY	3 cut(s)	196, 262, 565
BsuRI	GGCC	3 cut(s)	304, 485, 524
BtgI	CCRYGG	2 cut(s)	507, 641
BtsCI	GGATG	3 cut(s)	418, 616, 627
BtsIMutI	CAGTG	3 cut(s)	105, 315, 363
Cac8I	GCNNGC	2 cut(s)	668, 674
CaiI	CAGNNNCTG	2 cut(s)	11, 744
CciI	TCATGA	1 cut(s)	543
CfoI	GCGC	4 cut(s)	54, 340, 389, 672
Cfr13I	GGNCC	2 cut(s)	522, 523
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	5 cut(s)	37, 409, 508, 544, 663
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	6 cut(s)	75, 114, 156, 282, 366, 582
DpnI	GATC	7 cut(s)	57, 168, 198, 264, 316, 567, 691
DpnII	GATC	7 cut(s)	55, 166, 196, 262, 314, 565, 689
EaeI	YGGCCR	2 cut(s)	302, 483
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco130I	CCWWGG	7 cut(s)	85, 189, 228, 480, 507, 526, 713
Eco24I	GRGCYC	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	522
EcoRII	CCWGG	2 cut(s)	94, 128
EcoT14I	CCWWGG	7 cut(s)	85, 189, 228, 480, 507, 526, 713
EcoT38I	GRGCYC	1 cut(s)	526
ErhI	CCWWGG	7 cut(s)	85, 189, 228, 480, 507, 526, 713
FaeI	CATG	5 cut(s)	40, 412, 511, 547, 666
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	5 cut(s)	36, 408, 507, 543, 662
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	8 cut(s)	6, 22, 349, 352, 379, 382, 385, 390
FokI	GGATG	3 cut(s)	425, 623, 634
FriOI	GRGCYC	1 cut(s)	526
Fsp4HI	GCNGC	8 cut(s)	6, 22, 349, 352, 379, 382, 385, 390
GlaI	GCGC	4 cut(s)	53, 339, 388, 671
GluI	GCNGC	8 cut(s)	6, 22, 349, 352, 379, 382, 385, 390
HaeII	RGCGCY	1 cut(s)	673
HaeIII	GGCC	3 cut(s)	304, 485, 524
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	4 cut(s)	54, 340, 389, 672
Hin1II	CATG	5 cut(s)	40, 412, 511, 547, 666
Hin6I	GCGC	4 cut(s)	52, 338, 387, 670
HinP1I	GCGC	4 cut(s)	52, 338, 387, 670
HinfI	GANTC	3 cut(s)	61, 124, 659
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	2 cut(s)	496, 644
Hpy188I	TCNGA	5 cut(s)	60, 157, 201, 583, 694
Hpy188III	TCNNGA	2 cut(s)	247, 544
HpyAV	CCTTC	4 cut(s)	191, 364, 394, 511
HpyCH4III	ACNGT	2 cut(s)	109, 578
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	5 cut(s)	255, 384, 408, 666, 732
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 37, 310, 360, 384, 716
HpyF3I	CTNAG	6 cut(s)	75, 114, 156, 282, 366, 582
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	40, 412, 511, 547, 666
HspAI	GCGC	4 cut(s)	52, 338, 387, 670
Kzo9I	GATC	7 cut(s)	55, 166, 196, 262, 314, 565, 689
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	3 cut(s)	424, 715, 741
Lsp1109I	GCAGC	5 cut(s)	17, 360, 363, 368, 396
LweI	GCATC	3 cut(s)	17, 18, 612
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	7 cut(s)	57, 168, 198, 264, 316, 567, 691
MboI	GATC	7 cut(s)	55, 166, 196, 262, 314, 565, 689
MboII	GAAGA	5 cut(s)	206, 337, 355, 419, 457
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	3 cut(s)	196, 262, 565
MhlI	GDGCHC	4 cut(s)	107, 365, 421, 526
MlsI	TGGCCA	2 cut(s)	304, 485
MluCI	AATT	2 cut(s)	475, 699
MluNI	TGGCCA	2 cut(s)	304, 485
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	140, 254, 349, 595
Mox20I	TGGCCA	2 cut(s)	304, 485
MscI	TGGCCA	2 cut(s)	304, 485
Msp20I	TGGCCA	2 cut(s)	304, 485
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	96, 130
MunI	CAATTG	1 cut(s)	699
MvaI	CCWGG	2 cut(s)	96, 130
MvnI	CGCG	2 cut(s)	54, 389
MwoI	GCNNNNNNNGC	6 cut(s)	11, 37, 310, 360, 384, 716
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	7 cut(s)	55, 166, 196, 262, 314, 565, 689
NlaIII	CATG	5 cut(s)	40, 412, 511, 547, 666
NlaIV	GGNNCC	2 cut(s)	523, 524
NspI	RCATGY	1 cut(s)	40
PagI	TCATGA	1 cut(s)	543
PasI	CCCWGGG	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	61, 659
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	8 cut(s)	7, 23, 350, 353, 380, 383, 386, 391
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	94, 128
PspGI	CCWGG	2 cut(s)	94, 128
PspN4I	GGNNCC	2 cut(s)	523, 524
PspOMI	GGGCCC	1 cut(s)	522
PspPI	GGNCC	2 cut(s)	522, 523
PstI	CTGCAG	1 cut(s)	386
PstNI	CAGNNNCTG	2 cut(s)	11, 744
PsuI	RGATCY	3 cut(s)	196, 262, 565
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SapI	GCTCTTC	1 cut(s)	338
SatI	GCNGC	8 cut(s)	6, 22, 349, 352, 379, 382, 385, 390
Sau3AI	GATC	7 cut(s)	55, 166, 196, 262, 314, 565, 689
Sau96I	GGNCC	2 cut(s)	522, 523
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	96, 130
SduI	GDGCHC	4 cut(s)	107, 365, 421, 526
SfaNI	GCATC	3 cut(s)	17, 18, 612
SfcI	CTRYAG	1 cut(s)	382
Sse9I	AATT	2 cut(s)	475, 699
SsiI	CCGC	4 cut(s)	22, 99, 378, 389
SspI	AATATT	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	94, 128
StyI	CCWWGG	7 cut(s)	85, 189, 228, 480, 507, 526, 713
TaaI	ACNGT	2 cut(s)	109, 578
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	475, 699
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	3 cut(s)	24, 381, 392
TfiI	GAWTC	2 cut(s)	61, 659
TscAI	CASTG	3 cut(s)	112, 315, 370
TseI	GCWGC	5 cut(s)	5, 348, 351, 381, 384
TspDTI	ATGAA	4 cut(s)	532, 560, 651, 698
TspGWI	ACGGA	1 cut(s)	630
TspRI	CASTG	3 cut(s)	112, 315, 370
Tth111I	GACNNNGTC	1 cut(s)	209
XceI	RCATGY	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.