Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Reverse (-)

20644105 .. 20646711

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G232200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGGTTTGAAGAGACGGAGCTGAGGCTAGGGTTACCAGGAAATGGTGGAAGCCATGAAGGAGATCAAGCGGCAGCGGTGACGATGAGGAAGAGAGGGTTCTCTGAAACTGAGAGCAGTGAGGATGAGATCAGCTGTGAGACAAGCTGTGTGGATTTGAAGCTTAACCTTTCTAATTCTAAGGAGCAGGCAATAACTACTGGGAAAGATGTAACTGAAAAGTCCAAGACCAACAAGGACAACAAACTTGATCTCCCAGCTGCTGATCCTGCAAAGCCTCCAGCCAAGGCACAAGTTGTGGGCTGGCCACCGGTGCGATCGTTCCGAAAGAACATGTTCACGGCGTTGCAGAAGAGCCCGAGTGATAAAGAAAGTGAGCACAACAAGGGCAGCAGCAATGCAGTGACGTTGGTGAAGGTGAGCATGGATGGCGCACCCTACCTTCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCCTGAGCTCTCTGATGCCCTAGCCAAAATGTTCAGCTCCTTCGCCATCGGAAACTGTGGATCCCAAGGAATGAAGGATTTCATGAATGAAAGCAAGCTGATGGATGTGCTCAAGGGTTCTGATTACATTCCAACATATGAAGACAAGGATGGTGATTGGATGCTGGTTGGCGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGAGATTGCGCATAATGAAGGGCAAAGAGGCTGTTGGGCTGGCACCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

254

Amino Acids

27.88

Weight (kDa)

6.76

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	724
AccB7I	CCANNNNNTGG	1 cut(s)	44
AciI	CCGC	2 cut(s)	71, 77
AclWI	GGATC	3 cut(s)	260, 531, 544
AcoI	YGGCCR	1 cut(s)	305
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	333
AgeI	ACCGGT	1 cut(s)	310
AgsI	TTSAA	4 cut(s)	11, 160, 460, 674
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	9 cut(s)	22, 135, 147, 163, 260, 484, 513, 574, 759
AluI	AGCT	9 cut(s)	22, 135, 147, 163, 260, 484, 513, 574, 759
Alw21I	GWGCWC	3 cut(s)	381, 486, 588
Alw26I	GTCTC	2 cut(s)	8, 134
AlwI	GGATC	3 cut(s)	260, 531, 544
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	2 cut(s)	305, 732
ApeKI	GCWGC	4 cut(s)	74, 260, 390, 393
AsiGI	ACCGGT	1 cut(s)	310
Asp700I	GAANNNNTTC	2 cut(s)	335, 554
AspLEI	GCGC	2 cut(s)	434, 693
AspS9I	GGNCC	1 cut(s)	732
AsuHPI	GGTGA	4 cut(s)	91, 424, 430, 641
AvaI	CYCGRG	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	724
BanII	GRGCYC	2 cut(s)	359, 486
BbsI	GAAGAC	1 cut(s)	624
Bbv12I	GWGCWC	3 cut(s)	381, 486, 588
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	4 cut(s)	86, 247, 402, 405
BccI	CCATC	4 cut(s)	422, 530, 571, 620
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	8, 134
BfaI	CTAG	2 cut(s)	29, 497
BisI	GCNGC	5 cut(s)	72, 75, 261, 391, 394
BlsI	GCNGC	5 cut(s)	73, 76, 262, 392, 395
Bme1390I	CCNGG	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	732
BmiI	GGNNCC	2 cut(s)	538, 726
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	481, 627
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	624
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	2 cut(s)	23, 480
BpuEI	CTTGAG	1 cut(s)	572
BsaJI	CCNNGG	5 cut(s)	285, 541, 656, 728, 735
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	5 cut(s)	285, 541, 656, 728, 735
BseGI	GGATG	5 cut(s)	130, 433, 586, 631, 642
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	14, 102, 471
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	4 cut(s)	86, 247, 402, 405
BseYI	CCCAGC	1 cut(s)	256
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	307, 734
BshNI	GGYRCC	1 cut(s)	724
BshTI	ACCGGT	1 cut(s)	310
BsiEI	CGRYCG	1 cut(s)	320
BsiHKAI	GWGCWC	3 cut(s)	381, 486, 588
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	8, 134
BsmBI	CGTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	307, 734
BsoBI	CYCGRG	1 cut(s)	358
Bsp1286I	GDGCHC	4 cut(s)	359, 381, 486, 588
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	6 cut(s)	64, 129, 250, 265, 317, 536
Bsp19I	CCATGG	2 cut(s)	656, 735
BspACI	CCGC	2 cut(s)	71, 77
BspANI	GGCC	2 cut(s)	307, 734
BspCNI	CTCAG	3 cut(s)	15, 103, 472
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	538, 726
BspPI	GGATC	3 cut(s)	260, 531, 544
BspQI	GCTCTTC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	724
BsrDI	GCAATG	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	5 cut(s)	285, 541, 656, 728, 735
BssMI	GATC	6 cut(s)	64, 129, 250, 265, 317, 536
BssT1I	CCWWGG	5 cut(s)	285, 541, 656, 728, 735
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	3 cut(s)	6, 86, 347
BstAUI	TGTACA	1 cut(s)	465
BstC8I	GCNNGC	4 cut(s)	189, 305, 572, 723
BstDEI	CTNAG	4 cut(s)	23, 111, 180, 480
BstDSI	CCRYGG	2 cut(s)	656, 735
BstEII	GGTNACC	1 cut(s)	33
BstF5I	GGATG	5 cut(s)	130, 433, 586, 631, 642
BstHHI	GCGC	2 cut(s)	434, 693
BstKTI	GATC	6 cut(s)	67, 132, 253, 268, 320, 539
BstMAI	GTCTC	2 cut(s)	8, 134
BstMBI	GATC	6 cut(s)	64, 129, 250, 265, 317, 536
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 313, 429, 731
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	337
BstPI	GGTNACC	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	4 cut(s)	86, 247, 402, 405
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	307, 734
BtgI	CCRYGG	2 cut(s)	656, 735
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	5 cut(s)	130, 433, 586, 631, 642
BtsI	GCAGTG	2 cut(s)	124, 408
BtsIMutI	CAGTG	2 cut(s)	124, 408
Cac8I	GCNNGC	4 cut(s)	189, 305, 572, 723
CaiI	CAGNNNCTG	1 cut(s)	263
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	434, 693
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	732
Csp6I	GTAC	1 cut(s)	466
CspAI	ACCGGT	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	7 cut(s)	56, 334, 424, 559, 657, 678, 736
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	4 cut(s)	23, 111, 180, 480
DpnI	GATC	6 cut(s)	66, 131, 252, 267, 319, 538
DpnII	GATC	6 cut(s)	64, 129, 250, 265, 317, 536
EaeI	YGGCCR	1 cut(s)	305
Eam1104I	CTCTTC	3 cut(s)	6, 86, 347
EarI	CTCTTC	3 cut(s)	6, 86, 347
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	5 cut(s)	285, 541, 656, 728, 735
Eco24I	GRGCYC	2 cut(s)	359, 486
Eco53kI	GAGCTC	1 cut(s)	484
Eco88I	CYCGRG	1 cut(s)	358
Eco91I	GGTNACC	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	5 cut(s)	285, 541, 656, 728, 735
EcoT38I	GRGCYC	2 cut(s)	359, 486
ErhI	CCWWGG	5 cut(s)	285, 541, 656, 728, 735
Esp3I	CGTCTC	1 cut(s)	8
FaeI	CATG	7 cut(s)	59, 337, 427, 562, 660, 681, 739
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	7 cut(s)	55, 333, 423, 558, 656, 677, 735
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	5 cut(s)	72, 75, 261, 391, 394
FokI	GGATG	5 cut(s)	137, 440, 593, 638, 649
FriOI	GRGCYC	2 cut(s)	359, 486
Fsp4HI	GCNGC	5 cut(s)	72, 75, 261, 391, 394
FspBI	CTAG	2 cut(s)	29, 497
FspI	TGCGCA	1 cut(s)	692
GlaI	GCGC	2 cut(s)	433, 692
GluI	GCNGC	5 cut(s)	72, 75, 261, 391, 394
GsaI	CCCAGC	1 cut(s)	260
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	307, 734
HapII	CCGG	1 cut(s)	311
HhaI	GCGC	2 cut(s)	434, 693
Hin1II	CATG	7 cut(s)	59, 337, 427, 562, 660, 681, 739
Hin6I	GCGC	2 cut(s)	432, 691
HinP1I	GCGC	2 cut(s)	432, 691
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	1 cut(s)	674
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	4 cut(s)	91, 424, 430, 641
Hpy166II	GTNNAC	2 cut(s)	339, 454
Hpy188I	TCNGA	5 cut(s)	106, 326, 490, 527, 598
Hpy188III	TCNNGA	1 cut(s)	559
Hpy8I	GTNNAC	2 cut(s)	339, 454
HpyAV	CCTTC	6 cut(s)	53, 409, 452, 526, 544, 694
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	5 cut(s)	272, 349, 401, 681, 747
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 313, 429, 731
HpyF3I	CTNAG	4 cut(s)	23, 111, 180, 480
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	7 cut(s)	59, 337, 427, 562, 660, 681, 739
HspAI	GCGC	2 cut(s)	432, 691
Kzo9I	GATC	6 cut(s)	64, 129, 250, 265, 317, 536
LguI	GCTCTTC	1 cut(s)	347
LmnI	GCTCC	3 cut(s)	19, 184, 518
Lsp1109I	GCAGC	4 cut(s)	86, 247, 402, 405
LweI	GCATC	2 cut(s)	481, 627
MaeI	CTAG	2 cut(s)	29, 497
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	5 cut(s)	33, 79, 211, 403, 473
MalI	GATC	6 cut(s)	66, 131, 252, 267, 319, 538
MboI	GATC	6 cut(s)	64, 129, 250, 265, 317, 536
MboII	GAAGA	5 cut(s)	23, 103, 364, 472, 629
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	4 cut(s)	359, 381, 486, 588
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	632
MnlI	CCTC	6 cut(s)	18, 81, 89, 115, 288, 703
Mox20I	TGGCCA	1 cut(s)	307
MroXI	GAANNNNTTC	2 cut(s)	335, 554
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	307
MspA1I	CMGCKG	3 cut(s)	77, 135, 260
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	269, 313, 429, 731
NcoI	CCATGG	2 cut(s)	656, 735
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	6 cut(s)	64, 129, 250, 265, 317, 536
NlaIII	CATG	7 cut(s)	59, 337, 427, 562, 660, 681, 739
NlaIV	GGNNCC	2 cut(s)	538, 726
NmuCI	GTSAC	2 cut(s)	79, 403
NsbI	TGCGCA	1 cut(s)	692
NspI	RCATGY	1 cut(s)	337
PagI	TCATGA	1 cut(s)	558
PciI	ACATGT	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	347
PdmI	GAANNNNTTC	2 cut(s)	335, 554
PfeI	GAWTC	1 cut(s)	674
PflMI	CCANNNNNTGG	1 cut(s)	44
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	73, 76, 262, 392, 395
Ple19I	CGATCG	1 cut(s)	320
PscI	ACATGT	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	538, 726
PspPI	GGNCC	1 cut(s)	732
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	536
PvuI	CGATCG	1 cut(s)	320
PvuII	CAGCTG	2 cut(s)	135, 260
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	5 cut(s)	72, 75, 261, 391, 394
Sau3AI	GATC	6 cut(s)	64, 129, 250, 265, 317, 536
Sau96I	GGNCC	1 cut(s)	732
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	4 cut(s)	359, 381, 486, 588
SfaNI	GCATC	2 cut(s)	481, 627
SgrAI	CRCCGGYG	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	2 cut(s)	71, 77
SspMI	CTAG	2 cut(s)	29, 497
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	5 cut(s)	285, 541, 656, 728, 735
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	1 cut(s)	410
TasI	AATT	1 cut(s)	175
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	124, 408
TseFI	GTSAC	2 cut(s)	79, 403
TseI	GCWGC	4 cut(s)	74, 260, 390, 393
Tsp45I	GTSAC	2 cut(s)	79, 403
TspDTI	ATGAA	7 cut(s)	72, 547, 563, 575, 579, 630, 713
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	124, 408
Van91I	CCANNNNNTGG	1 cut(s)	44
XceI	RCATGY	1 cut(s)	337
XmnI	GAANNNNTTC	2 cut(s)	335, 554
XspI	CTAG	2 cut(s)	29, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.