Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

6130896 .. 6134074

Gene Structure 3179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG031000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCAAGAAATTCTATTTTCGGTTCAAAGATTATTTCATCTCTTTACTAATAGTCATAGTAATCTGGCTAAACTTGTTATTAATGTATTATGCATTAATTACTTCTTCAGGGCACAAGTTGTCGGTTGGCCACCAGTGCGCTCCTACAGAAAGAACGTTATGGCGCAGAAAAGCACCGGCGAGGAGAGCAGTACTACTACTGAGAAGGCTGCATTCGTGAAGGTTTGCATGGATGGTGCACCCTATCTTCGTAAGGTGGATTTGAAGATGTACAAGAGCTACAAGGAGCTATCTGATGCCTTGTCCAAGATGTTCAGCTCCTTCACCATGGGTTACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGTACTGAGTATGTGCCGACCTATGAAGATAAGGATGGAGACTGGATGCTTGTGGGTGATGTTCCATGGGAGATGTTTGTTGATTCATGCAAGCGCCTGCGAATAATGAAAGGATCAGAAGCAATTGGACTTGCTCCAAAAGCGATGGAGAAATGCAAGAACAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

188

Amino Acids

21.56

Weight (kDa)

8.79

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	37 - 179	2.3e-77	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	2 cut(s)	393, 517
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	91
AfaI	GTAC	3 cut(s)	193, 272, 400
AgsI	TTSAA	2 cut(s)	26, 265
AluBI	AGCT	4 cut(s)	279, 289, 318, 564
AluI	AGCT	4 cut(s)	279, 289, 318, 564
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	429
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	393, 517
AlwNI	CAGNNNCTG	1 cut(s)	564
AoxI	GGCC	2 cut(s)	128, 342
ApaI	GGGCCC	1 cut(s)	346
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	9
AseI	ATTAAT	2 cut(s)	81, 96
AspLEI	GCGC	3 cut(s)	141, 166, 492
AspS9I	GGNCC	2 cut(s)	342, 343
AsuHPI	GGTGA	2 cut(s)	316, 464
BaeGI	GKGCMC	3 cut(s)	115, 241, 346
BalI	TGGCCA	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	4 cut(s)	227, 376, 425, 535
BcoDI	GTCTC	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	493
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmcAI	AGTACT	2 cut(s)	193, 400
BmgT120I	GGNCC	2 cut(s)	342, 343
BmiI	GGNNCC	2 cut(s)	343, 344
BmsI	GCATC	2 cut(s)	286, 432
BsaJI	CCNNGG	3 cut(s)	327, 346, 461
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	134, 443
BseDI	CCNNGG	3 cut(s)	327, 346, 461
BseGI	GGATG	3 cut(s)	238, 436, 447
BseMII	CTCAG	2 cut(s)	192, 393
BseNI	ACTGG	2 cut(s)	134, 443
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	3 cut(s)	115, 241, 346
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	2 cut(s)	130, 344
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	130, 344
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	3 cut(s)	115, 241, 346
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	385, 509
Bsp19I	CCATGG	2 cut(s)	327, 461
BspANI	GGCC	2 cut(s)	130, 344
BspCNI	CTCAG	2 cut(s)	193, 394
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	343, 344
BspPI	GGATC	2 cut(s)	393, 517
BsrFI	RCCGGY	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	134, 443
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	327, 346, 461
BssMI	GATC	2 cut(s)	385, 509
BssT1I	CCWWGG	3 cut(s)	327, 346, 461
Bst4CI	ACNGT	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	488, 494
BstDEI	CTNAG	2 cut(s)	201, 402
BstDSI	CCRYGG	2 cut(s)	327, 461
BstF5I	GGATG	3 cut(s)	238, 436, 447
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	3 cut(s)	141, 166, 492
BstKTI	GATC	2 cut(s)	388, 512
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	2 cut(s)	385, 509
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 186, 536
BstSFI	CTRYAG	1 cut(s)	145
BstSLI	GKGCMC	3 cut(s)	115, 241, 346
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	130, 344
BtgI	CCRYGG	2 cut(s)	327, 461
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	3 cut(s)	238, 436, 447
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	488, 494
CaiI	CAGNNNCTG	1 cut(s)	564
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	3 cut(s)	141, 166, 492
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	342, 343
Csp6I	GTAC	3 cut(s)	192, 271, 399
CviAII	CATG	5 cut(s)	229, 328, 364, 462, 483
CviJI	RGCY	8 cut(s)	68, 130, 209, 279, 289, 318, 344, 564
CviKI_1	RGCY	8 cut(s)	68, 130, 209, 279, 289, 318, 344, 564
CviQI	GTAC	3 cut(s)	192, 271, 399
DdeI	CTNAG	2 cut(s)	201, 402
DpnI	GATC	2 cut(s)	387, 511
DpnII	GATC	2 cut(s)	385, 509
EaeI	YGGCCR	1 cut(s)	128
Eco130I	CCWWGG	3 cut(s)	327, 346, 461
Eco24I	GRGCYC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	342
EcoT14I	CCWWGG	3 cut(s)	327, 346, 461
EcoT22I	ATGCAT	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	3 cut(s)	327, 346, 461
FaeI	CATG	5 cut(s)	232, 331, 367, 465, 486
FatI	CATG	5 cut(s)	228, 327, 363, 461, 482
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	245, 443, 454
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	210
GlaI	GCGC	3 cut(s)	140, 165, 491
GluI	GCNGC	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	130, 344
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	3 cut(s)	141, 166, 492
Hin1II	CATG	5 cut(s)	232, 331, 367, 465, 486
Hin6I	GCGC	3 cut(s)	139, 164, 490
HinP1I	GCGC	3 cut(s)	139, 164, 490
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	316, 464
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	295, 393, 514
Hpy188III	TCNNGA	2 cut(s)	217, 364
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	199, 214, 331
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	7 cut(s)	4, 93, 212, 228, 239, 486, 552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 186, 536
HpyF3I	CTNAG	2 cut(s)	201, 402
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	5 cut(s)	232, 331, 367, 465, 486
HspAI	GCGC	3 cut(s)	139, 164, 490
Kzo9I	GATC	2 cut(s)	385, 509
LmnI	GCTCC	4 cut(s)	146, 286, 323, 535
LpnPI	CCDG	6 cut(s)	50, 94, 147, 190, 424, 506
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	286, 432
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	2 cut(s)	387, 511
MboI	GATC	2 cut(s)	385, 509
MboII	GAAGA	5 cut(s)	97, 239, 277, 380, 434
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	3 cut(s)	115, 241, 346
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	3 cut(s)	9, 97, 519
MluNI	TGGCCA	1 cut(s)	130
MnlI	CCTC	1 cut(s)	175
Mox20I	TGGCCA	1 cut(s)	130
Mph1103I	ATGCAT	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	130
MseI	TTAA	2 cut(s)	81, 96
Msp20I	TGGCCA	1 cut(s)	130
MspI	CCGG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	136, 186, 536
NcoI	CCATGG	2 cut(s)	327, 461
NdeII	GATC	2 cut(s)	385, 509
NlaIII	CATG	5 cut(s)	232, 331, 367, 465, 486
NlaIV	GGNNCC	2 cut(s)	343, 344
NsiI	ATGCAT	1 cut(s)	95
PagI	TCATGA	1 cut(s)	363
PctI	GAATGC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	211
PshBI	ATTAAT	2 cut(s)	81, 96
Psp1406I	AACGTT	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	343, 344
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	342, 343
PstNI	CAGNNNCTG	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	3 cut(s)	193, 272, 400
RsaNI	GTAC	3 cut(s)	192, 271, 399
SaqAI	TTAA	2 cut(s)	81, 96
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	2 cut(s)	385, 509
Sau96I	GGNCC	2 cut(s)	342, 343
ScaI	AGTACT	2 cut(s)	193, 400
SduI	GDGCHC	3 cut(s)	115, 241, 346
SetI	ASST	8 cut(s)	159, 225, 258, 281, 291, 320, 419, 566
SfaNI	GCATC	2 cut(s)	286, 432
SfcI	CTRYAG	1 cut(s)	145
SgrAI	CRCCGGYG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	9, 97, 519
StyI	CCWWGG	3 cut(s)	327, 346, 461
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	1 cut(s)	159
TasI	AATT	3 cut(s)	9, 97, 519
TatI	WGTACW	3 cut(s)	191, 270, 398
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	81, 96
Tru9I	TTAA	2 cut(s)	81, 96
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	6 cut(s)	26, 352, 380, 435, 471, 518
TspRI	CASTG	1 cut(s)	141
VneI	GTGCAC	1 cut(s)	237
VspI	ATTAAT	2 cut(s)	81, 96
XapI	RAATTY	1 cut(s)	9
ZrmI	AGTACT	2 cut(s)	193, 400
Zsp2I	ATGCAT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.