Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Reverse (-)

8347822 .. 8350263

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCCGGAGGCACTGAAACCGTTGAAAGTCCGGCCAAGTCGGGTGTTGGGAACAAGAGAGGCTTCTCCGAGACCGTTGATCTCAAACTTAATCTTCAATCTAACAAACAAGGACATGTGGATCTCAACACTAATGGAGCTCCCAAGGAGAAGACCTTCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTGGTGGGTTGGCCACCGGTGAGGAACTACCGGAAAAATGTTATGGCTAATCAGAAGAGCGGCGAAGCAGAGGAGGCAATGAGTAGTGGTGGAGGAACCGTCGCCTTTGTGAAGGTTTCCATGGATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGATGTACACCAGCTACAAGGATCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCATGGGGAGTTATGGAGCACAAGGGATGATAGATTTCATGAACGAGAGTAAAGTGATGGATCTGTTGAACAGTTCTGAGTATGTTCCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCCTGGCCGATGTTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAGGATCCGAAGCAATTGGACTTGCTCCAAGAGCAATGGAGAAGTTCAAGAACAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

228

Amino Acids

25.04

Weight (kDa)

8.68

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	5 - 195	8e-70	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	288
AciI	CCGC	1 cut(s)	288
AclI	AACGTT	1 cut(s)	610
AclWI	GGATC	5 cut(s)	162, 414, 513, 624, 637
AcoI	YGGCCR	4 cut(s)	66, 239, 423, 584
AfaI	GTAC	1 cut(s)	392
AflII	CTTAAG	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	244
AgsI	TTSAA	4 cut(s)	59, 131, 514, 673
AjnI	CCWGG	1 cut(s)	581
AluBI	AGCT	6 cut(s)	22, 173, 359, 399, 438, 537
AluI	AGCT	6 cut(s)	22, 173, 359, 399, 438, 537
Alw21I	GWGCWC	3 cut(s)	175, 361, 466
Alw26I	GTCTC	2 cut(s)	8, 98
AlwI	GGATC	5 cut(s)	162, 414, 513, 624, 637
AoxI	GGCC	5 cut(s)	31, 66, 239, 423, 584
AsiGI	ACCGGT	1 cut(s)	244
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	618
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	3 cut(s)	259, 566, 584
BalI	TGGCCA	2 cut(s)	241, 425
BamHI	GGATCC	1 cut(s)	629
BanII	GRGCYC	2 cut(s)	175, 361
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	3 cut(s)	175, 361, 466
BccI	CCATC	3 cut(s)	347, 496, 545
BciT130I	CCWGG	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	8, 98
BfrI	CTTAAG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	2 cut(s)	39, 583
BmiI	GGNNCC	2 cut(s)	325, 631
BmrFI	CCNGG	2 cut(s)	39, 583
BmsI	GCATC	2 cut(s)	406, 552
BpiI	GAAGAC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	6 cut(s)	37, 177, 348, 420, 447, 581
BsaWI	WCCGGW	2 cut(s)	244, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	2 cut(s)	312, 666
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	6 cut(s)	37, 177, 348, 420, 447, 581
BseGI	GGATG	3 cut(s)	358, 477, 567
BseMI	GCAATG	2 cut(s)	312, 666
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	1 cut(s)	314
BshFI	GGCC	5 cut(s)	33, 68, 241, 425, 586
BshTI	ACCGGT	1 cut(s)	244
BsiHKAI	GWGCWC	3 cut(s)	175, 361, 466
BsiSI	CCGG	4 cut(s)	39, 65, 245, 259
BslFI	GGGAC	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	8, 98
BsmBI	CGTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	5 cut(s)	33, 68, 241, 425, 586
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	175, 361, 466
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	6 cut(s)	112, 154, 406, 505, 629, 680
Bsp19I	CCATGG	2 cut(s)	348, 447
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	5 cut(s)	33, 68, 241, 425, 586
BspCNI	CTCAG	1 cut(s)	514
BspHI	TCATGA	2 cut(s)	483, 683
BspLI	GGNNCC	2 cut(s)	325, 631
BspPI	GGATC	5 cut(s)	162, 414, 513, 624, 637
BspQI	GCTCTTC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	312, 666
BsrFI	RCCGGY	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	6 cut(s)	37, 177, 348, 420, 447, 581
BssMI	GATC	6 cut(s)	112, 154, 406, 505, 629, 680
BssT1I	CCWWGG	4 cut(s)	177, 348, 420, 447
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	4 cut(s)	55, 109, 328, 518
Bst6I	CTCTTC	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	390
BstDEI	CTNAG	2 cut(s)	207, 522
BstDSI	CCRYGG	2 cut(s)	348, 447
BstF5I	GGATG	3 cut(s)	358, 477, 567
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	6 cut(s)	115, 157, 409, 508, 632, 683
BstMAI	GTCTC	2 cut(s)	8, 98
BstMBI	GATC	6 cut(s)	112, 154, 406, 505, 629, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 656
BstNI	CCWGG	1 cut(s)	583
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	37, 581
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	4 cut(s)	154, 406, 505, 629
BstYI	RGATCY	4 cut(s)	154, 406, 505, 629
BsuRI	GGCC	5 cut(s)	33, 68, 241, 425, 586
BtgI	CCRYGG	2 cut(s)	348, 447
BtsCI	GGATG	3 cut(s)	358, 477, 567
BtsIMutI	CAGTG	1 cut(s)	45
CciI	TCATGA	2 cut(s)	483, 683
CfoI	GCGC	1 cut(s)	618
Cfr10I	RCCGGY	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	391
CspAI	ACCGGT	1 cut(s)	244
CviAII	CATG	6 cut(s)	149, 349, 448, 484, 603, 684
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	207, 522
DpnI	GATC	6 cut(s)	114, 156, 408, 507, 631, 682
DpnII	GATC	6 cut(s)	112, 154, 406, 505, 629, 680
EaeI	YGGCCR	4 cut(s)	66, 239, 423, 584
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Ecl136II	GAGCTC	2 cut(s)	173, 359
Eco130I	CCWWGG	4 cut(s)	177, 348, 420, 447
Eco24I	GRGCYC	2 cut(s)	175, 361
Eco31I	GGTCTC	1 cut(s)	98
Eco53kI	GAGCTC	2 cut(s)	173, 359
EcoICRI	GAGCTC	2 cut(s)	173, 359
EcoRII	CCWGG	1 cut(s)	581
EcoT14I	CCWWGG	4 cut(s)	177, 348, 420, 447
EcoT38I	GRGCYC	2 cut(s)	175, 361
ErhI	CCWWGG	4 cut(s)	177, 348, 420, 447
Esp3I	CGTCTC	1 cut(s)	8
FaeI	CATG	6 cut(s)	152, 352, 451, 487, 606, 687
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	6 cut(s)	148, 348, 447, 483, 602, 683
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	3 cut(s)	365, 484, 574
FriOI	GRGCYC	2 cut(s)	175, 361
Fsp4HI	GCNGC	1 cut(s)	289
FspI	TGCGCA	1 cut(s)	617
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	1 cut(s)	289
HaeIII	GGCC	5 cut(s)	33, 68, 241, 425, 586
HapII	CCGG	4 cut(s)	39, 65, 245, 259
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	6 cut(s)	152, 352, 451, 487, 606, 687
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	4 cut(s)	39, 65, 245, 259
HphI	GGTGA	3 cut(s)	259, 566, 584
Hpy166II	GTNNAC	2 cut(s)	379, 393
Hpy188I	TCNGA	6 cut(s)	103, 282, 372, 415, 523, 634
Hpy188III	TCNNGA	4 cut(s)	385, 484, 673, 684
Hpy8I	GTNNAC	2 cut(s)	379, 393
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	4 cut(s)	199, 213, 334, 367
HpyCH4III	ACNGT	4 cut(s)	55, 109, 328, 518
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	1 cut(s)	606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 656
HpyF3I	CTNAG	2 cut(s)	207, 522
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	6 cut(s)	152, 352, 451, 487, 606, 687
HspAI	GCGC	1 cut(s)	616
Kzo9I	GATC	6 cut(s)	112, 154, 406, 505, 629, 680
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	8 cut(s)	19, 170, 178, 356, 364, 443, 461, 655
LpnPI	CCDG	9 cut(s)	52, 78, 228, 258, 272, 409, 544, 568, 595
LweI	GCATC	2 cut(s)	406, 552
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	6 cut(s)	114, 156, 408, 507, 631, 682
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	6 cut(s)	112, 154, 406, 505, 629, 680
MboII	GAAGA	4 cut(s)	119, 196, 295, 359
MfeI	CAATTG	1 cut(s)	639
MflI	RGATCY	4 cut(s)	154, 406, 505, 629
MhlI	GDGCHC	3 cut(s)	175, 361, 466
MlsI	TGGCCA	2 cut(s)	241, 425
MluCI	AATT	1 cut(s)	639
MluNI	TGGCCA	2 cut(s)	241, 425
MlyI	GAGTC	1 cut(s)	608
Mox20I	TGGCCA	2 cut(s)	241, 425
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	2 cut(s)	241, 425
MseI	TTAA	3 cut(s)	9, 123, 195
Msp20I	TGGCCA	2 cut(s)	241, 425
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	4 cut(s)	39, 65, 245, 259
MspR9I	CCNGG	2 cut(s)	39, 583
MunI	CAATTG	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	302, 656
NciI	CCSGG	1 cut(s)	39
NcoI	CCATGG	2 cut(s)	348, 447
NdeII	GATC	6 cut(s)	112, 154, 406, 505, 629, 680
NlaIII	CATG	6 cut(s)	152, 352, 451, 487, 606, 687
NlaIV	GGNNCC	2 cut(s)	325, 631
NmuCI	GTSAC	1 cut(s)	554
NsbI	TGCGCA	1 cut(s)	617
NspI	RCATGY	1 cut(s)	152
PagI	TCATGA	2 cut(s)	483, 683
PciI	ACATGT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	188
PinAI	ACCGGT	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
PscI	ACATGT	1 cut(s)	148
Psp124BI	GAGCTC	2 cut(s)	175, 361
Psp1406I	AACGTT	1 cut(s)	610
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	325, 631
PsuI	RGATCY	4 cut(s)	154, 406, 505, 629
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SacI	GAGCTC	2 cut(s)	175, 361
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	9, 123, 195
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	6 cut(s)	112, 154, 406, 505, 629, 680
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	39, 583
SduI	GDGCHC	3 cut(s)	175, 361, 466
SfaNI	GCATC	2 cut(s)	406, 552
SgrAI	CRCCGGYG	1 cut(s)	244
SmlI	CTYRAG	2 cut(s)	8, 383
SmoI	CTYRAG	2 cut(s)	8, 383
Sse9I	AATT	1 cut(s)	639
SsiI	CCGC	1 cut(s)	288
SstI	GAGCTC	2 cut(s)	175, 361
StyD4I	CCNGG	2 cut(s)	37, 581
StyI	CCWWGG	4 cut(s)	177, 348, 420, 447
TaaI	ACNGT	4 cut(s)	55, 109, 328, 518
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	597
TasI	AATT	1 cut(s)	639
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	291
Tru1I	TTAA	3 cut(s)	9, 123, 195
Tru9I	TTAA	3 cut(s)	9, 123, 195
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	4 cut(s)	17, 472, 500, 638
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	52
Vha464I	CTTAAG	1 cut(s)	8
XceI	RCATGY	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.