Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

2122941 .. 2125371

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02280.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAGTTGTTATCCGGAAGATGAATCTGAACTTCAAGGAGACCGAGCTGTGCCTTGGGTTGCCCGGCGGGGCTGCTTTGACGACCGAGCCGGAGATCTGTACCCCTAAGGCTACCGGAAAGAGAGGTTTCTCCGAGACAGTTGATCTCAAGCTCAACCTTCATGCCAACGAAGGTTTGATGAATGAGAGTGTCAAAAATGTTTCTTCCAGGGAGAAAAACCTTCCCTGCATTAAGGATCCAGCCAAACCACCTGCCAAGGCACAAGTTGTGGGTTGGCCACCAGTTCGCTCCTTCAGAAAGAACGTTATGGCGCAGAAGAGCACCGGCGAGGAGAGTAGTACTACTACTGAGAAGGCTGCATTCGTGAAGGTTTGCATGGATGGTGCACCTTACCTTCGTAAGGTAGATTTGAAGATGTACAAGAGCTACAAGGAGCTGTCTGATGCCTTGTCCAAGATGTTCAGCTCCTTCACCACAGGTTACTACGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGCTGATGGATCTGCTGAACAGTACTGAGTATGTGCCAACCTATGAAGATAAGGATGGAGACTGGATGCTTGTGGGTGATGTTCCATGGGAGATGTTTGTTGATTCATGCAAGCGATTGCGAATAATGAAAGGATCAGAAGCAATTGGACTTGCTCCAAAAGCGATGGAGAAATGCAAGAACAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

239

Amino Acids

26.52

Weight (kDa)

8.61

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	7 - 149	1.2e-77	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	4 cut(s)	233, 246, 543, 667
AcoI	YGGCCR	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	280
AfaI	GTAC	4 cut(s)	103, 343, 422, 550
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	37, 415
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	7 cut(s)	49, 154, 429, 439, 468, 529, 714
AluI	AGCT	7 cut(s)	49, 154, 429, 439, 468, 529, 714
Alw21I	GWGCWC	2 cut(s)	326, 391
Alw26I	GTCTC	3 cut(s)	35, 131, 579
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	4 cut(s)	233, 246, 543, 667
AlwNI	CAGNNNCTG	1 cut(s)	714
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	2 cut(s)	278, 492
ApaI	GGGCCC	1 cut(s)	496
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	74, 359
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	492, 493
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	466, 614
AxyI	CCTNAGG	1 cut(s)	108
BaeGI	GKGCMC	2 cut(s)	391, 496
BalI	TGGCCA	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	496
Bbv12I	GWGCWC	2 cut(s)	326, 391
BbvI	GCAGC	2 cut(s)	61, 346
BccI	CCATC	4 cut(s)	377, 526, 575, 685
BciT130I	CCWGG	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	3 cut(s)	35, 131, 579
BfuAI	ACCTGC	1 cut(s)	262
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	2 cut(s)	75, 360
BlsI	GCNGC	2 cut(s)	76, 361
BmcAI	AGTACT	2 cut(s)	343, 550
Bme1390I	CCNGG	2 cut(s)	66, 211
BmgT120I	GGNCC	2 cut(s)	492, 493
BmiI	GGNNCC	3 cut(s)	240, 493, 494
BmrFI	CCNGG	2 cut(s)	66, 211
BmsI	GCATC	2 cut(s)	436, 582
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	5 cut(s)	55, 210, 258, 496, 611
BsaWI	WCCGGW	2 cut(s)	15, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	284, 593
Bse21I	CCTNAGG	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	5 cut(s)	55, 210, 258, 496, 611
BseGI	GGATG	3 cut(s)	388, 586, 597
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	342, 543
BseNI	ACTGG	2 cut(s)	284, 593
BseRI	GAGGAG	1 cut(s)	347
BseSI	GKGCMC	2 cut(s)	391, 496
BseXI	GCAGC	2 cut(s)	61, 346
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	280, 494
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	326, 391
BsiSI	CCGG	5 cut(s)	16, 66, 92, 117, 327
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	3 cut(s)	35, 131, 579
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	280, 494
Bso31I	GGTCTC	1 cut(s)	35
Bsp120I	GGGCCC	1 cut(s)	492
Bsp1286I	GDGCHC	3 cut(s)	326, 391, 496
Bsp13I	TCCGGA	1 cut(s)	15
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	5 cut(s)	96, 145, 238, 535, 659
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	280, 494
BspCNI	CTCAG	2 cut(s)	343, 544
BspEI	TCCGGA	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	240, 493, 494
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	4 cut(s)	233, 246, 543, 667
BspQI	GCTCTTC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	2 cut(s)	284, 593
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	5 cut(s)	55, 210, 258, 496, 611
BssMI	GATC	5 cut(s)	96, 145, 238, 535, 659
BssT1I	CCWWGG	4 cut(s)	55, 258, 496, 611
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	2 cut(s)	142, 548
Bst6I	CTCTTC	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	527, 638
BstDEI	CTNAG	3 cut(s)	108, 351, 552
BstDSI	CCRYGG	1 cut(s)	611
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	388, 586, 597
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	5 cut(s)	99, 148, 241, 538, 662
BstMAI	GTCTC	3 cut(s)	35, 131, 579
BstMBI	GATC	5 cut(s)	96, 145, 238, 535, 659
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	64, 209
BstSLI	GKGCMC	2 cut(s)	391, 496
BstV1I	GCAGC	2 cut(s)	61, 346
BstX2I	RGATCY	3 cut(s)	96, 238, 535
BstYI	RGATCY	3 cut(s)	96, 238, 535
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	280, 494
BtgI	CCRYGG	1 cut(s)	611
BtgZI	GCGATG	1 cut(s)	704
BtsCI	GGATG	3 cut(s)	388, 586, 597
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	527, 638
CaiI	CAGNNNCTG	1 cut(s)	714
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	492, 493
Csp6I	GTAC	4 cut(s)	102, 342, 421, 549
CviAII	CATG	5 cut(s)	164, 379, 514, 612, 633
CviQI	GTAC	4 cut(s)	102, 342, 421, 549
DdeI	CTNAG	3 cut(s)	108, 351, 552
DpnI	GATC	5 cut(s)	98, 147, 240, 537, 661
DpnII	GATC	5 cut(s)	96, 145, 238, 535, 659
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco130I	CCWWGG	4 cut(s)	55, 258, 496, 611
Eco24I	GRGCYC	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	280
Eco81I	CCTNAGG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	492
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	4 cut(s)	55, 258, 496, 611
EcoT38I	GRGCYC	1 cut(s)	496
ErhI	CCWWGG	4 cut(s)	55, 258, 496, 611
FaeI	CATG	5 cut(s)	167, 382, 517, 615, 636
FaiI	YATR	8 cut(s)	165, 311, 380, 515, 558, 570, 613, 634
FatI	CATG	5 cut(s)	163, 378, 513, 611, 632
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	75, 360
FokI	GGATG	3 cut(s)	395, 593, 604
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	2 cut(s)	75, 360
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	2 cut(s)	75, 360
HaeIII	GGCC	2 cut(s)	280, 494
HapII	CCGG	5 cut(s)	16, 66, 92, 117, 327
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	5 cut(s)	167, 382, 517, 615, 636
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	2 cut(s)	25, 629
HpaII	CCGG	5 cut(s)	16, 66, 92, 117, 327
HphI	GGTGA	2 cut(s)	466, 614
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	5 cut(s)	30, 136, 299, 445, 664
Hpy188III	TCNNGA	3 cut(s)	16, 367, 514
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	8 cut(s)	167, 170, 233, 304, 349, 364, 407, 481
HpyCH4III	ACNGT	2 cut(s)	142, 548
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	6 cut(s)	231, 362, 378, 389, 636, 702
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	3 cut(s)	108, 351, 552
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	5 cut(s)	167, 382, 517, 615, 636
HspAI	GCGC	1 cut(s)	314
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	96, 145, 238, 535, 659
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	4 cut(s)	296, 436, 473, 685
Lsp1109I	GCAGC	2 cut(s)	61, 346
LweI	GCATC	2 cut(s)	436, 582
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	5 cut(s)	98, 147, 240, 537, 661
MboI	GATC	5 cut(s)	96, 145, 238, 535, 659
MboII	GAAGA	5 cut(s)	31, 198, 331, 427, 584
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	3 cut(s)	96, 238, 535
MhlI	GDGCHC	3 cut(s)	326, 391, 496
MlsI	TGGCCA	1 cut(s)	280
MluCI	AATT	1 cut(s)	669
MluNI	TGGCCA	1 cut(s)	280
MnlI	CCTC	2 cut(s)	119, 325
Mox20I	TGGCCA	1 cut(s)	280
MroI	TCCGGA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	280
MspI	CCGG	5 cut(s)	16, 66, 92, 117, 327
MspR9I	CCNGG	2 cut(s)	66, 211
MunI	CAATTG	1 cut(s)	669
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	5 cut(s)	96, 145, 238, 535, 659
NlaIII	CATG	5 cut(s)	167, 382, 517, 615, 636
NlaIV	GGNNCC	3 cut(s)	240, 493, 494
PagI	TCATGA	1 cut(s)	513
PaqCI	CACCTGC	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	314
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	25, 629
PkrI	GCNGC	2 cut(s)	76, 361
Psp1406I	AACGTT	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	240, 493, 494
PspOMI	GGGCCC	1 cut(s)	492
PspPI	GGNCC	2 cut(s)	492, 493
PstNI	CAGNNNCTG	1 cut(s)	714
PsuI	RGATCY	3 cut(s)	96, 238, 535
RsaI	GTAC	4 cut(s)	103, 343, 422, 550
RsaNI	GTAC	4 cut(s)	102, 342, 421, 549
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	75, 360
Sau3AI	GATC	5 cut(s)	96, 145, 238, 535, 659
Sau96I	GGNCC	2 cut(s)	492, 493
ScaI	AGTACT	2 cut(s)	343, 550
ScrFI	CCNGG	2 cut(s)	66, 211
SduI	GDGCHC	3 cut(s)	326, 391, 496
SfaNI	GCATC	2 cut(s)	436, 582
SgrAI	CRCCGGYG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	669
SsiI	CCGC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	64, 209
StyI	CCWWGG	4 cut(s)	55, 258, 496, 611
TaaI	ACNGT	2 cut(s)	142, 548
TaiI	ACGT	1 cut(s)	309
TaqII	GACCGA	2 cut(s)	59, 101
TasI	AATT	1 cut(s)	669
TatI	WGTACW	3 cut(s)	341, 420, 548
TfiI	GAWTC	2 cut(s)	25, 629
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseI	GCWGC	2 cut(s)	74, 359
TspDTI	ATGAA	8 cut(s)	38, 152, 197, 502, 530, 585, 621, 668
VneI	GTGCAC	1 cut(s)	387
XagI	CCTNNNNNAGG	1 cut(s)	401
ZrmI	AGTACT	2 cut(s)	343, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.