Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550 |
| fragaria_vesca | FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280 |
| malus_domestica | MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1 |
| prunus_persica | Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 |
| pyrus_communis | pycom05g19190 pycom13g17780 pycom16g17370 |
| rosa_chinensis | RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571 |
| rosa_laevigata | RLG00000009966 RLG00000012292 |
| rosa_multiflora | Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00335610 Rroxscaffold_7G00177850 |
| rosa_rugosa | Rorug03G0324200 Rorug06G0204600 |
| rosa_samantha | Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200 |
| rosa_wichuraiana | Rw4G002160 Rw6G027270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 69 |
| AclWI | GGATC | 1 cut(s) | 230 |
| AfaI | GTAC | 1 cut(s) | 100 |
| AgsI | TTSAA | 2 cut(s) | 31, 37 |
| AluBI | AGCT | 2 cut(s) | 8, 49 |
| AluI | AGCT | 2 cut(s) | 8, 49 |
| Alw26I | GTCTC | 1 cut(s) | 128 |
| AlwI | GGATC | 1 cut(s) | 230 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| AsuC2I | CCSGG | 1 cut(s) | 66 |
| AxyI | CCTNAGG | 1 cut(s) | 105 |
| BbvI | GCAGC | 1 cut(s) | 61 |
| BcnI | CCSGG | 1 cut(s) | 66 |
| BcoDI | GTCTC | 1 cut(s) | 128 |
| BglII | AGATCT | 2 cut(s) | 93, 172 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| Bme1390I | CCNGG | 1 cut(s) | 66 |
| BmrFI | CCNGG | 1 cut(s) | 66 |
| BpuMI | CCSGG | 1 cut(s) | 66 |
| BsaI | GGTCTC | 1 cut(s) | 128 |
| BsaJI | CCNNGG | 3 cut(s) | 55, 165, 207 |
| BsaWI | WCCGGW | 1 cut(s) | 113 |
| Bse21I | CCTNAGG | 1 cut(s) | 105 |
| BseDI | CCNNGG | 3 cut(s) | 55, 165, 207 |
| BseXI | GCAGC | 1 cut(s) | 61 |
| BsiSI | CCGG | 4 cut(s) | 16, 66, 89, 114 |
| BsmAI | GTCTC | 1 cut(s) | 128 |
| Bso31I | GGTCTC | 1 cut(s) | 128 |
| Bsp143I | GATC | 4 cut(s) | 93, 142, 172, 235 |
| BspACI | CCGC | 1 cut(s) | 69 |
| BspPI | GGATC | 1 cut(s) | 230 |
| BspTNI | GGTCTC | 1 cut(s) | 128 |
| BssECI | CCNNGG | 3 cut(s) | 55, 165, 207 |
| BssMI | GATC | 4 cut(s) | 93, 142, 172, 235 |
| BssT1I | CCWWGG | 3 cut(s) | 55, 165, 207 |
| Bst4CI | ACNGT | 1 cut(s) | 139 |
| BstDEI | CTNAG | 1 cut(s) | 105 |
| BstKTI | GATC | 4 cut(s) | 96, 145, 175, 238 |
| BstMAI | GTCTC | 1 cut(s) | 128 |
| BstMBI | GATC | 4 cut(s) | 93, 142, 172, 235 |
| BstSCI | CCNGG | 1 cut(s) | 64 |
| BstV1I | GCAGC | 1 cut(s) | 61 |
| BstX2I | RGATCY | 3 cut(s) | 93, 172, 235 |
| BstYI | RGATCY | 3 cut(s) | 93, 172, 235 |
| Bsu36I | CCTNAGG | 1 cut(s) | 105 |
| Csp6I | GTAC | 1 cut(s) | 99 |
| CviJI | RGCY | 7 cut(s) | 8, 15, 49, 74, 88, 110, 254 |
| CviKI_1 | RGCY | 7 cut(s) | 8, 15, 49, 74, 88, 110, 254 |
| CviQI | GTAC | 1 cut(s) | 99 |
| DdeI | CTNAG | 1 cut(s) | 105 |
| DpnI | GATC | 4 cut(s) | 95, 144, 174, 237 |
| DpnII | GATC | 4 cut(s) | 93, 142, 172, 235 |
| Eco130I | CCWWGG | 3 cut(s) | 55, 165, 207 |
| Eco31I | GGTCTC | 1 cut(s) | 128 |
| Eco81I | CCTNAGG | 1 cut(s) | 105 |
| EcoT14I | CCWWGG | 3 cut(s) | 55, 165, 207 |
| ErhI | CCWWGG | 3 cut(s) | 55, 165, 207 |
| FauI | CCCGC | 1 cut(s) | 62 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| GluI | GCNGC | 1 cut(s) | 75 |
| HapII | CCGG | 4 cut(s) | 16, 66, 89, 114 |
| HpaII | CCGG | 4 cut(s) | 16, 66, 89, 114 |
| Hpy188I | TCNGA | 2 cut(s) | 133, 177 |
| HpyAV | CCTTC | 1 cut(s) | 230 |
| HpyCH4III | ACNGT | 1 cut(s) | 139 |
| HpyF3I | CTNAG | 1 cut(s) | 105 |
| Kzo9I | GATC | 4 cut(s) | 93, 142, 172, 235 |
| LpnPI | CCDG | 5 cut(s) | 29, 79, 102, 127, 252 |
| Lsp1109I | GCAGC | 1 cut(s) | 61 |
| MaeIII | GTNAC | 1 cut(s) | 79 |
| MalI | GATC | 4 cut(s) | 95, 144, 174, 237 |
| MboI | GATC | 4 cut(s) | 93, 142, 172, 235 |
| MboII | GAAGA | 3 cut(s) | 31, 182, 195 |
| MflI | RGATCY | 3 cut(s) | 93, 172, 235 |
| MnlI | CCTC | 1 cut(s) | 116 |
| MseI | TTAA | 1 cut(s) | 231 |
| MspI | CCGG | 4 cut(s) | 16, 66, 89, 114 |
| MspR9I | CCNGG | 1 cut(s) | 66 |
| NciI | CCSGG | 1 cut(s) | 66 |
| NdeII | GATC | 4 cut(s) | 93, 142, 172, 235 |
| NmuCI | GTSAC | 1 cut(s) | 79 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| PsuI | RGATCY | 3 cut(s) | 93, 172, 235 |
| RsaI | GTAC | 1 cut(s) | 100 |
| RsaNI | GTAC | 1 cut(s) | 99 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| SatI | GCNGC | 1 cut(s) | 75 |
| Sau3AI | GATC | 4 cut(s) | 93, 142, 172, 235 |
| ScrFI | CCNGG | 1 cut(s) | 66 |
| SetI | ASST | 5 cut(s) | 10, 51, 127, 159, 222 |
| SsiI | CCGC | 1 cut(s) | 69 |
| StyD4I | CCNGG | 1 cut(s) | 64 |
| StyI | CCWWGG | 3 cut(s) | 55, 165, 207 |
| TaaI | ACNGT | 1 cut(s) | 139 |
| TaqII | GACCGA | 1 cut(s) | 98 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TseFI | GTSAC | 1 cut(s) | 79 |
| TseI | GCWGC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 1 cut(s) | 79 |