Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550 |
| fragaria_vesca | FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280 |
| malus_domestica | MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1 |
| prunus_persica | Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 |
| pyrus_communis | pycom05g19190 pycom13g17780 pycom16g17370 |
| rosa_chinensis | RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571 |
| rosa_laevigata | RLG00000009966 RLG00000012292 |
| rosa_multiflora | Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00335610 Rroxscaffold_7G00177850 |
| rosa_rugosa | Rorug03G0324200 Rorug06G0204600 |
| rosa_samantha | Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200 |
| rosa_wichuraiana | Rw4G002160 Rw6G027270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 362 |
| AccI | GTMKAC | 1 cut(s) | 123 |
| AciI | CCGC | 1 cut(s) | 11 |
| AclWI | GGATC | 2 cut(s) | 201, 214 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 118 |
| AgsI | TTSAA | 2 cut(s) | 130, 344 |
| AleI | CACNNNNGTG | 1 cut(s) | 11 |
| AluBI | AGCT | 5 cut(s) | 24, 154, 183, 244, 429 |
| AluI | AGCT | 5 cut(s) | 24, 154, 183, 244, 429 |
| Alw21I | GWGCWC | 3 cut(s) | 26, 106, 156 |
| Alw44I | GTGCAC | 1 cut(s) | 102 |
| AlwI | GGATC | 2 cut(s) | 201, 214 |
| ApaLI | GTGCAC | 1 cut(s) | 102 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 224 |
| AspLEI | GCGC | 2 cut(s) | 166, 363 |
| AsuHPI | GGTGA | 3 cut(s) | 94, 181, 311 |
| AsuNHI | GCTAGC | 1 cut(s) | 166 |
| BaeGI | GKGCMC | 1 cut(s) | 106 |
| BamHI | GGATCC | 1 cut(s) | 206 |
| BanII | GRGCYC | 2 cut(s) | 26, 156 |
| BbsI | GAAGAC | 1 cut(s) | 294 |
| Bbv12I | GWGCWC | 3 cut(s) | 26, 106, 156 |
| BccI | CCATC | 3 cut(s) | 92, 241, 290 |
| BceAI | ACGGC | 1 cut(s) | 24 |
| BfaI | CTAG | 1 cut(s) | 167 |
| BmiI | GGNNCC | 1 cut(s) | 208 |
| BmsI | GCATC | 2 cut(s) | 151, 297 |
| BmtI | GCTAGC | 1 cut(s) | 170 |
| BpiI | GAAGAC | 1 cut(s) | 294 |
| Bpu10I | CCTNAGC | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 3 cut(s) | 211, 326, 405 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 118 |
| BseDI | CCNNGG | 3 cut(s) | 211, 326, 405 |
| BseGI | GGATG | 4 cut(s) | 103, 256, 301, 312 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BseMII | CTCAG | 1 cut(s) | 141 |
| BseSI | GKGCMC | 1 cut(s) | 106 |
| BsiHKAI | GWGCWC | 3 cut(s) | 26, 106, 156 |
| BslFI | GGGAC | 1 cut(s) | 308 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BsmFI | GGGAC | 1 cut(s) | 308 |
| Bsp1286I | GDGCHC | 3 cut(s) | 26, 106, 156 |
| Bsp1407I | TGTACA | 1 cut(s) | 135 |
| Bsp143I | GATC | 1 cut(s) | 206 |
| Bsp19I | CCATGG | 2 cut(s) | 326, 405 |
| BspACI | CCGC | 1 cut(s) | 11 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspHI | TCATGA | 1 cut(s) | 228 |
| BspLI | GGNNCC | 1 cut(s) | 208 |
| BspOI | GCTAGC | 1 cut(s) | 170 |
| BspPI | GGATC | 2 cut(s) | 201, 214 |
| BspQI | GCTCTTC | 1 cut(s) | 365 |
| BsrGI | TGTACA | 1 cut(s) | 135 |
| BssECI | CCNNGG | 3 cut(s) | 211, 326, 405 |
| BssMI | GATC | 1 cut(s) | 206 |
| BssT1I | CCWWGG | 3 cut(s) | 211, 326, 405 |
| Bst4CI | ACNGT | 1 cut(s) | 263 |
| Bst6I | CTCTTC | 1 cut(s) | 365 |
| BstAUI | TGTACA | 1 cut(s) | 135 |
| BstC8I | GCNNGC | 3 cut(s) | 168, 242, 393 |
| BstDEI | CTNAG | 1 cut(s) | 150 |
| BstDSI | CCRYGG | 2 cut(s) | 326, 405 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 116 |
| BstF5I | GGATG | 4 cut(s) | 103, 256, 301, 312 |
| BstHHI | GCGC | 2 cut(s) | 166, 363 |
| BstKTI | GATC | 1 cut(s) | 209 |
| BstMBI | GATC | 1 cut(s) | 206 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 401 |
| BstSLI | GKGCMC | 1 cut(s) | 106 |
| BstV2I | GAAGAC | 1 cut(s) | 294 |
| BstX2I | RGATCY | 1 cut(s) | 206 |
| BstYI | RGATCY | 1 cut(s) | 206 |
| BtgI | CCRYGG | 2 cut(s) | 326, 405 |
| BtgZI | GCGATG | 1 cut(s) | 333 |
| BtsCI | GGATG | 4 cut(s) | 103, 256, 301, 312 |
| Cac8I | GCNNGC | 3 cut(s) | 168, 242, 393 |
| CciI | TCATGA | 1 cut(s) | 228 |
| CfoI | GCGC | 2 cut(s) | 166, 363 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 5 cut(s) | 94, 229, 327, 348, 406 |
| CviJI | RGCY | 9 cut(s) | 24, 154, 170, 183, 244, 383, 391, 404, 429 |
| CviKI_1 | RGCY | 9 cut(s) | 24, 154, 170, 183, 244, 383, 391, 404, 429 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 1 cut(s) | 150 |
| DpnI | GATC | 1 cut(s) | 208 |
| DpnII | GATC | 1 cut(s) | 206 |
| Eam1104I | CTCTTC | 1 cut(s) | 365 |
| EarI | CTCTTC | 1 cut(s) | 365 |
| Ecl136II | GAGCTC | 2 cut(s) | 24, 154 |
| Eco130I | CCWWGG | 3 cut(s) | 211, 326, 405 |
| Eco24I | GRGCYC | 2 cut(s) | 26, 156 |
| Eco53kI | GAGCTC | 2 cut(s) | 24, 154 |
| EcoICRI | GAGCTC | 2 cut(s) | 24, 154 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 116 |
| EcoT14I | CCWWGG | 3 cut(s) | 211, 326, 405 |
| EcoT38I | GRGCYC | 2 cut(s) | 26, 156 |
| ErhI | CCWWGG | 3 cut(s) | 211, 326, 405 |
| FaeI | CATG | 5 cut(s) | 97, 232, 330, 351, 409 |
| FaiI | YATR | 9 cut(s) | 95, 230, 283, 285, 328, 349, 365, 407, 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 110, 142 |
| FaqI | GGGAC | 1 cut(s) | 308 |
| FatI | CATG | 5 cut(s) | 93, 228, 326, 347, 405 |
| FauNDI | CATATG | 1 cut(s) | 283 |
| FblI | GTMKAC | 1 cut(s) | 123 |
| FokI | GGATG | 4 cut(s) | 110, 263, 308, 319 |
| FriOI | GRGCYC | 2 cut(s) | 26, 156 |
| FspBI | CTAG | 1 cut(s) | 167 |
| FspI | TGCGCA | 1 cut(s) | 362 |
| GlaI | GCGC | 2 cut(s) | 165, 362 |
| HhaI | GCGC | 2 cut(s) | 166, 363 |
| Hin1II | CATG | 5 cut(s) | 97, 232, 330, 351, 409 |
| Hin6I | GCGC | 2 cut(s) | 164, 361 |
| HinP1I | GCGC | 2 cut(s) | 164, 361 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HinfI | GANTC | 1 cut(s) | 344 |
| HphI | GGTGA | 3 cut(s) | 94, 181, 311 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 104, 124 |
| Hpy188I | TCNGA | 2 cut(s) | 160, 268 |
| Hpy188III | TCNNGA | 1 cut(s) | 229 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 104, 124 |
| HpyAV | CCTTC | 4 cut(s) | 79, 122, 196, 214 |
| HpyCH4III | ACNGT | 1 cut(s) | 263 |
| HpyCH4V | TGCA | 6 cut(s) | 16, 74, 104, 351, 395, 417 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 401 |
| HpyF3I | CTNAG | 1 cut(s) | 150 |
| Hsp92II | CATG | 5 cut(s) | 97, 232, 330, 351, 409 |
| HspAI | GCGC | 2 cut(s) | 164, 361 |
| Kzo9I | GATC | 1 cut(s) | 206 |
| LguI | GCTCTTC | 1 cut(s) | 365 |
| LmnI | GCTCC | 1 cut(s) | 188 |
| LpnPI | CCDG | 3 cut(s) | 65, 162, 296 |
| LweI | GCATC | 2 cut(s) | 151, 297 |
| MaeI | CTAG | 1 cut(s) | 167 |
| MaeIII | GTNAC | 1 cut(s) | 143 |
| MalI | GATC | 1 cut(s) | 208 |
| MboI | GATC | 1 cut(s) | 206 |
| MboII | GAAGA | 3 cut(s) | 142, 299, 382 |
| MflI | RGATCY | 1 cut(s) | 206 |
| MhlI | GDGCHC | 3 cut(s) | 26, 106, 156 |
| MluCI | AATT | 1 cut(s) | 199 |
| MmeI | TCCRAC | 1 cut(s) | 302 |
| MnlI | CCTC | 1 cut(s) | 373 |
| MroXI | GAANNNNTTC | 1 cut(s) | 224 |
| MslI | CAYNNNNRTG | 1 cut(s) | 11 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 401 |
| NcoI | CCATGG | 2 cut(s) | 326, 405 |
| NdeI | CATATG | 1 cut(s) | 283 |
| NdeII | GATC | 1 cut(s) | 206 |
| NheI | GCTAGC | 1 cut(s) | 166 |
| NlaIII | CATG | 5 cut(s) | 97, 232, 330, 351, 409 |
| NlaIV | GGNNCC | 1 cut(s) | 208 |
| NsbI | TGCGCA | 1 cut(s) | 362 |
| OliI | CACNNNNGTG | 1 cut(s) | 11 |
| PagI | TCATGA | 1 cut(s) | 228 |
| PciSI | GCTCTTC | 1 cut(s) | 365 |
| PdmI | GAANNNNTTC | 1 cut(s) | 224 |
| PfeI | GAWTC | 1 cut(s) | 344 |
| Psp124BI | GAGCTC | 2 cut(s) | 26, 156 |
| PspN4I | GGNNCC | 1 cut(s) | 208 |
| PsuI | RGATCY | 1 cut(s) | 206 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 1 cut(s) | 11 |
| SacI | GAGCTC | 2 cut(s) | 26, 156 |
| SalI | GTCGAC | 1 cut(s) | 122 |
| SapI | GCTCTTC | 1 cut(s) | 365 |
| Sau3AI | GATC | 1 cut(s) | 206 |
| SduI | GDGCHC | 3 cut(s) | 26, 106, 156 |
| SetI | ASST | 8 cut(s) | 26, 90, 114, 123, 156, 185, 246, 431 |
| SfaNI | GCATC | 2 cut(s) | 151, 297 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 11 |
| Sse9I | AATT | 1 cut(s) | 199 |
| SsiI | CCGC | 1 cut(s) | 11 |
| SspMI | CTAG | 1 cut(s) | 167 |
| SstI | GAGCTC | 2 cut(s) | 26, 156 |
| StyI | CCWWGG | 3 cut(s) | 211, 326, 405 |
| TaaI | ACNGT | 1 cut(s) | 263 |
| TaqI | TCGA | 2 cut(s) | 26, 123 |
| TasI | AATT | 1 cut(s) | 199 |
| TatI | WGTACW | 1 cut(s) | 135 |
| TfiI | GAWTC | 1 cut(s) | 344 |
| TspDTI | ATGAA | 6 cut(s) | 65, 217, 233, 245, 300, 383 |
| TspGWI | ACGGA | 1 cut(s) | 48 |
| VneI | GTGCAC | 1 cut(s) | 102 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 116 |
| XmiI | GTMKAC | 1 cut(s) | 123 |
| XmnI | GAANNNNTTC | 1 cut(s) | 224 |
| XspI | CTAG | 1 cut(s) | 167 |