Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1461 |
| AccB1I | GGYRCC | 1 cut(s) | 1540 |
| AciI | CCGC | 4 cut(s) | 48, 1131, 1151, 2313 |
| AclI | AACGTT | 1 cut(s) | 2053 |
| AclWI | GGATC | 7 cut(s) | 213, 226, 1101, 1276, 1278, 1291, 2645 |
| AcoI | YGGCCR | 1 cut(s) | 87 |
| AcsI | RAATTY | 4 cut(s) | 376, 718, 1632, 2330 |
| AcuI | CTGAAG | 3 cut(s) | 258, 1068, 1403 |
| AfaI | GTAC | 7 cut(s) | 1295, 1310, 1475, 1905, 2076, 2592, 2760 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 922, 998, 1151, 1928, 2533 |
| AflIII | ACRYGT | 1 cut(s) | 1964 |
| AjiI | CACGTC | 1 cut(s) | 104 |
| AjnI | CCWGG | 2 cut(s) | 1778, 2242 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 361, 393, 2260, 2292 |
| Alw21I | GWGCWC | 1 cut(s) | 311 |
| Alw26I | GTCTC | 7 cut(s) | 183, 227, 410, 954, 1484, 2284, 2555 |
| AlwI | GGATC | 7 cut(s) | 213, 226, 1101, 1276, 1278, 1291, 2645 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 848, 1476, 2249, 2491 |
| AoxI | GGCC | 7 cut(s) | 87, 179, 358, 1122, 1848, 1919, 2626 |
| ApeKI | GCWGC | 8 cut(s) | 41, 598, 761, 1196, 1342, 1400, 1403, 2011 |
| ApoI | RAATTY | 4 cut(s) | 376, 718, 1632, 2330 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2239, 2271 |
| AseI | ATTAAT | 1 cut(s) | 2178 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 300, 486 |
| AspA2I | CCTAGG | 1 cut(s) | 1958 |
| AspLEI | GCGC | 1 cut(s) | 2381 |
| AspS9I | GGNCC | 5 cut(s) | 179, 359, 744, 1123, 1919 |
| AsuC2I | CCSGG | 2 cut(s) | 178, 805 |
| AsuHPI | GGTGA | 6 cut(s) | 77, 299, 995, 1224, 1573, 1856 |
| AvaII | GGWCC | 1 cut(s) | 744 |
| AvrII | CCTAGG | 1 cut(s) | 1958 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2465, 2498 |
| BalI | TGGCCA | 1 cut(s) | 89 |
| BamHI | GGATCC | 2 cut(s) | 218, 1283 |
| BanI | GGYRCC | 1 cut(s) | 1540 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2613, 2645 |
| BauI | CACGAG | 1 cut(s) | 735 |
| BbsI | GAAGAC | 4 cut(s) | 439, 2487, 2532, 2721 |
| Bbv12I | GWGCWC | 1 cut(s) | 311 |
| BbvCI | CCTCAGC | 1 cut(s) | 2000 |
| BbvI | GCAGC | 8 cut(s) | 53, 585, 748, 1183, 1329, 1387, 1390, 1998 |
| BccI | CCATC | 6 cut(s) | 284, 350, 1367, 1869, 2357, 2666 |
| BceAI | ACGGC | 1 cut(s) | 1152 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1251, 1285 |
| BciT130I | CCWGG | 2 cut(s) | 1780, 2244 |
| BciVI | GTATCC | 1 cut(s) | 2511 |
| BclI | TGATCA | 1 cut(s) | 2200 |
| BcnI | CCSGG | 2 cut(s) | 178, 805 |
| BcoDI | GTCTC | 7 cut(s) | 183, 227, 410, 954, 1484, 2284, 2555 |
| BfmI | CTRYAG | 5 cut(s) | 1260, 1395, 2439, 2547, 2774 |
| BfuAI | ACCTGC | 1 cut(s) | 1461 |
| BfuI | GTATCC | 1 cut(s) | 2511 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1713 |
| BisI | GCNGC | 8 cut(s) | 42, 599, 762, 1197, 1343, 1401, 1404, 2012 |
| BlnI | CCTAGG | 1 cut(s) | 1958 |
| BlsI | GCNGC | 8 cut(s) | 43, 600, 763, 1198, 1344, 1402, 1405, 2013 |
| Bme1390I | CCNGG | 4 cut(s) | 178, 805, 1780, 2244 |
| Bme18I | GGWCC | 1 cut(s) | 744 |
| BmgBI | CACGTC | 1 cut(s) | 104 |
| BmgT120I | GGNCC | 5 cut(s) | 179, 359, 744, 1123, 1919 |
| BmiI | GGNNCC | 7 cut(s) | 220, 745, 746, 942, 1285, 1542, 1609 |
| BmrFI | CCNGG | 4 cut(s) | 178, 805, 1780, 2244 |
| BmrI | ACTGGG | 2 cut(s) | 356, 1306 |
| BmuI | ACTGGG | 2 cut(s) | 356, 1306 |
| BpiI | GAAGAC | 4 cut(s) | 439, 2487, 2532, 2721 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 959, 991 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2000 |
| BpuEI | CTTGAG | 4 cut(s) | 802, 1118, 1466, 1811 |
| BpuMI | CCSGG | 2 cut(s) | 178, 805 |
| BsaJI | CCNNGG | 7 cut(s) | 228, 609, 1134, 1958, 2243, 2267, 2316 |
| BsaWI | WCCGGW | 1 cut(s) | 2644 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1566, 1596 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 922, 998, 1151, 1928, 2533 |
| Bse1I | ACTGG | 6 cut(s) | 362, 1301, 1336, 1609, 1732, 1949 |
| Bse3DI | GCAATG | 2 cut(s) | 1321, 1687 |
| BseBI | CCWGG | 2 cut(s) | 1780, 2244 |
| BseDI | CCNNGG | 7 cut(s) | 228, 609, 1134, 1958, 2243, 2267, 2316 |
| BseGI | GGATG | 8 cut(s) | 44, 145, 211, 283, 1909, 1945, 2398, 2653 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 922, 998, 1151, 1928, 2533 |
| BseMI | GCAATG | 2 cut(s) | 1321, 1687 |
| BseMII | CTCAG | 8 cut(s) | 357, 1007, 1538, 1815, 1991, 2217, 2373, 2550 |
| BseNI | ACTGG | 6 cut(s) | 362, 1301, 1336, 1609, 1732, 1949 |
| BseRI | GAGGAG | 4 cut(s) | 92, 709, 981, 1774 |
| BseXI | GCAGC | 8 cut(s) | 53, 585, 748, 1183, 1329, 1387, 1390, 1998 |
| BseYI | CCCAGC | 1 cut(s) | 1442 |
| BshFI | GGCC | 7 cut(s) | 89, 181, 360, 1124, 1850, 1921, 2628 |
| BshNI | GGYRCC | 1 cut(s) | 1540 |
| BsiHKAI | GWGCWC | 1 cut(s) | 311 |
| BsiSI | CCGG | 3 cut(s) | 177, 805, 2645 |
| BslFI | GGGAC | 3 cut(s) | 757, 2260, 2438 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 922, 998, 1151, 1928, 2533 |
| BsmAI | GTCTC | 7 cut(s) | 183, 227, 410, 954, 1484, 2284, 2555 |
| BsmFI | GGGAC | 3 cut(s) | 757, 2260, 2438 |
| BsmI | GAATGC | 1 cut(s) | 1699 |
| BsnI | GGCC | 7 cut(s) | 89, 181, 360, 1124, 1850, 1921, 2628 |
| Bsp1286I | GDGCHC | 1 cut(s) | 311 |
| Bsp1407I | TGTACA | 1 cut(s) | 2590 |
| Bsp143I | GATC | 8 cut(s) | 218, 698, 996, 1093, 1268, 1283, 2200, 2650 |
| Bsp19I | CCATGG | 1 cut(s) | 2316 |
| BspACI | CCGC | 4 cut(s) | 48, 1131, 1151, 2313 |
| BspANI | GGCC | 7 cut(s) | 89, 181, 360, 1124, 1850, 1921, 2628 |
| BspCNI | CTCAG | 8 cut(s) | 356, 1006, 1539, 1816, 1992, 2218, 2374, 2551 |
| BspHI | TCATGA | 2 cut(s) | 391, 2674 |
| BspLI | GGNNCC | 7 cut(s) | 220, 745, 746, 942, 1285, 1542, 1609 |
| BspMAI | CTGCAG | 1 cut(s) | 1264 |
| BspMI | ACCTGC | 1 cut(s) | 1461 |
| BspPI | GGATC | 7 cut(s) | 213, 226, 1101, 1276, 1278, 1291, 2645 |
| BspT107I | GGYRCC | 1 cut(s) | 1540 |
| BsrDI | GCAATG | 2 cut(s) | 1321, 1687 |
| BsrGI | TGTACA | 1 cut(s) | 2590 |
| BsrI | ACTGG | 6 cut(s) | 362, 1301, 1336, 1609, 1732, 1949 |
| BssECI | CCNNGG | 7 cut(s) | 228, 609, 1134, 1958, 2243, 2267, 2316 |
| BssMI | GATC | 8 cut(s) | 218, 698, 996, 1093, 1268, 1283, 2200, 2650 |
| BssSI | CACGAG | 1 cut(s) | 735 |
| BssT1I | CCWWGG | 5 cut(s) | 228, 609, 1958, 2267, 2316 |
| Bst2BI | CACGAG | 1 cut(s) | 735 |
| Bst2UI | CCWGG | 2 cut(s) | 1780, 2244 |
| Bst4CI | ACNGT | 8 cut(s) | 214, 863, 1219, 1478, 2251, 2478, 2528, 2775 |
| Bst6I | CTCTTC | 5 cut(s) | 585, 747, 1081, 1836, 2425 |
| BstAUI | TGTACA | 1 cut(s) | 2590 |
| BstC8I | GCNNGC | 5 cut(s) | 23, 880, 1054, 1408, 2466 |
| BstDEI | CTNAG | 9 cut(s) | 343, 993, 1062, 1547, 1824, 2000, 2226, 2382, 2559 |
| BstDSI | CCRYGG | 2 cut(s) | 1134, 2316 |
| BstEII | GGTNACC | 1 cut(s) | 2262 |
| BstF5I | GGATG | 8 cut(s) | 44, 145, 211, 283, 1909, 1945, 2398, 2653 |
| BstHHI | GCGC | 1 cut(s) | 2381 |
| BstKTI | GATC | 8 cut(s) | 221, 701, 999, 1096, 1271, 1286, 2203, 2653 |
| BstMAI | GTCTC | 7 cut(s) | 183, 227, 410, 954, 1484, 2284, 2555 |
| BstMBI | GATC | 8 cut(s) | 218, 698, 996, 1093, 1268, 1283, 2200, 2650 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 47, 306, 888, 1130, 1361, 1400, 1713, 1894 |
| BstNI | CCWGG | 2 cut(s) | 1780, 2244 |
| BstNSI | RCATGY | 4 cut(s) | 1056, 1410, 1968, 2684 |
| BstPI | GGTNACC | 1 cut(s) | 2262 |
| BstSCI | CCNGG | 4 cut(s) | 176, 803, 1778, 2242 |
| BstSFI | CTRYAG | 5 cut(s) | 1260, 1395, 2439, 2547, 2774 |
| BstV1I | GCAGC | 8 cut(s) | 53, 585, 748, 1183, 1329, 1387, 1390, 1998 |
| BstV2I | GAAGAC | 4 cut(s) | 439, 2487, 2532, 2721 |
| BstX2I | RGATCY | 3 cut(s) | 218, 1093, 1283 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 229, 1296, 1524, 2665 |
| BstYI | RGATCY | 3 cut(s) | 218, 1093, 1283 |
| BsuI | GTATCC | 1 cut(s) | 2511 |
| BsuRI | GGCC | 7 cut(s) | 89, 181, 360, 1124, 1850, 1921, 2628 |
| BtgI | CCRYGG | 2 cut(s) | 1134, 2316 |
| BtrI | CACGTC | 1 cut(s) | 104 |
| BtsCI | GGATG | 8 cut(s) | 44, 145, 211, 283, 1909, 1945, 2398, 2653 |
| BtsI | GCAGTG | 2 cut(s) | 1660, 2156 |
| BtsIMutI | CAGTG | 5 cut(s) | 311, 1544, 1602, 1660, 2156 |
| BveI | ACCTGC | 1 cut(s) | 1461 |
| Cac8I | GCNNGC | 5 cut(s) | 23, 880, 1054, 1408, 2466 |
| CaiI | CAGNNNCTG | 4 cut(s) | 848, 1476, 2249, 2491 |
| CciI | TCATGA | 2 cut(s) | 391, 2674 |
| CfoI | GCGC | 1 cut(s) | 2381 |
| Cfr13I | GGNCC | 5 cut(s) | 179, 359, 744, 1123, 1919 |
| CseI | GACGC | 1 cut(s) | 2021 |
| Csp6I | GTAC | 7 cut(s) | 1294, 1309, 1474, 1904, 2075, 2591, 2759 |
| CviQI | GTAC | 7 cut(s) | 1294, 1309, 1474, 1904, 2075, 2591, 2759 |
| DdeI | CTNAG | 9 cut(s) | 343, 993, 1062, 1547, 1824, 2000, 2226, 2382, 2559 |
| DpnI | GATC | 8 cut(s) | 220, 700, 998, 1095, 1270, 1285, 2202, 2652 |
| DpnII | GATC | 8 cut(s) | 218, 698, 996, 1093, 1268, 1283, 2200, 2650 |
| EaeI | YGGCCR | 1 cut(s) | 87 |
| Eam1104I | CTCTTC | 5 cut(s) | 585, 747, 1081, 1836, 2425 |
| EarI | CTCTTC | 5 cut(s) | 585, 747, 1081, 1836, 2425 |
| EciI | GGCGGA | 1 cut(s) | 1120 |
| Eco130I | CCWWGG | 5 cut(s) | 228, 609, 1958, 2267, 2316 |
| Eco147I | AGGCCT | 2 cut(s) | 1850, 2628 |
| Eco47I | GGWCC | 1 cut(s) | 744 |
| Eco57I | CTGAAG | 3 cut(s) | 258, 1068, 1403 |
| Eco91I | GGTNACC | 1 cut(s) | 2262 |
| EcoO109I | RGGNCCY | 1 cut(s) | 744 |
| EcoO65I | GGTNACC | 1 cut(s) | 2262 |
| EcoRI | GAATTC | 1 cut(s) | 2330 |
| EcoRII | CCWGG | 2 cut(s) | 1778, 2242 |
| EcoT14I | CCWWGG | 5 cut(s) | 228, 609, 1958, 2267, 2316 |
| ErhI | CCWWGG | 5 cut(s) | 228, 609, 1958, 2267, 2316 |
| FaqI | GGGAC | 3 cut(s) | 757, 2260, 2438 |
| FauI | CCCGC | 2 cut(s) | 1144, 2320 |
| FbaI | TGATCA | 1 cut(s) | 2200 |
| Fnu4HI | GCNGC | 8 cut(s) | 42, 599, 762, 1197, 1343, 1401, 1404, 2012 |
| FokI | GGATG | 8 cut(s) | 31, 132, 218, 290, 1896, 1932, 2405, 2660 |
| Fsp4HI | GCNGC | 8 cut(s) | 42, 599, 762, 1197, 1343, 1401, 1404, 2012 |
| GlaI | GCGC | 1 cut(s) | 2380 |
| GluI | GCNGC | 8 cut(s) | 42, 599, 762, 1197, 1343, 1401, 1404, 2012 |
| GsaI | CCCAGC | 1 cut(s) | 1446 |
| HaeIII | GGCC | 7 cut(s) | 89, 181, 360, 1124, 1850, 1921, 2628 |
| HapII | CCGG | 3 cut(s) | 177, 805, 2645 |
| HgaI | GACGC | 1 cut(s) | 2021 |
| HhaI | GCGC | 1 cut(s) | 2381 |
| Hin6I | GCGC | 1 cut(s) | 2379 |
| HinP1I | GCGC | 1 cut(s) | 2379 |
| HincII | GTYRAC | 1 cut(s) | 1687 |
| HindII | GTYRAC | 1 cut(s) | 1687 |
| HindIII | AAGCTT | 3 cut(s) | 240, 298, 2063 |
| HpaII | CCGG | 3 cut(s) | 177, 805, 2645 |
| HphI | GGTGA | 6 cut(s) | 77, 299, 995, 1224, 1573, 1856 |
| Hpy166II | GTNNAC | 3 cut(s) | 1309, 1687, 1954 |
| Hpy8I | GTNNAC | 3 cut(s) | 1309, 1687, 1954 |
| Hpy99I | CGWCG | 1 cut(s) | 453 |
| HpyAV | CCTTC | 6 cut(s) | 734, 1274, 1378, 1706, 2246, 2615 |
| HpyCH4III | ACNGT | 8 cut(s) | 214, 863, 1219, 1478, 2251, 2478, 2528, 2775 |
| HpyCH4IV | ACGT | 3 cut(s) | 103, 442, 2053 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 47, 306, 888, 1130, 1361, 1400, 1713, 1894 |
| HpyF3I | CTNAG | 9 cut(s) | 343, 993, 1062, 1547, 1824, 2000, 2226, 2382, 2559 |
| HpySE526I | ACGT | 3 cut(s) | 103, 442, 2053 |
| HspAI | GCGC | 1 cut(s) | 2379 |
| KflI | GGGWCCC | 1 cut(s) | 744 |
| Ksp22I | TGATCA | 1 cut(s) | 2200 |
| Kzo9I | GATC | 8 cut(s) | 218, 698, 996, 1093, 1268, 1283, 2200, 2650 |
| LmnI | GCTCC | 1 cut(s) | 2314 |
| Lsp1109I | GCAGC | 8 cut(s) | 53, 585, 748, 1183, 1329, 1387, 1390, 1998 |
| MaeII | ACGT | 3 cut(s) | 103, 442, 2053 |
| MaeIII | GTNAC | 6 cut(s) | 65, 397, 1462, 2262, 2503, 2728 |
| MalI | GATC | 8 cut(s) | 220, 700, 998, 1095, 1270, 1285, 2202, 2652 |
| MboI | GATC | 8 cut(s) | 218, 698, 996, 1093, 1268, 1283, 2200, 2650 |
| MfeI | CAATTG | 1 cut(s) | 2115 |
| MflI | RGATCY | 3 cut(s) | 218, 1093, 1283 |
| MhlI | GDGCHC | 1 cut(s) | 311 |
| MlsI | TGGCCA | 1 cut(s) | 89 |
| MluNI | TGGCCA | 1 cut(s) | 89 |
| MlyI | GAGTC | 5 cut(s) | 182, 335, 1175, 1459, 2546 |
| MmeI | TCCRAC | 5 cut(s) | 196, 1169, 1246, 1785, 1859 |
| Mox20I | TGGCCA | 1 cut(s) | 89 |
| MroXI | GAANNNNTTC | 2 cut(s) | 300, 486 |
| MscI | TGGCCA | 1 cut(s) | 89 |
| MseI | TTAA | 5 cut(s) | 512, 836, 1820, 2019, 2178 |
| MslI | CAYNNNNRTG | 6 cut(s) | 150, 1191, 1350, 1869, 2208, 2679 |
| Msp20I | TGGCCA | 1 cut(s) | 89 |
| MspA1I | CMGCKG | 1 cut(s) | 2558 |
| MspI | CCGG | 3 cut(s) | 177, 805, 2645 |
| MspR9I | CCNGG | 4 cut(s) | 178, 805, 1780, 2244 |
| MunI | CAATTG | 1 cut(s) | 2115 |
| Mva1269I | GAATGC | 1 cut(s) | 1699 |
| MvaI | CCWGG | 2 cut(s) | 1780, 2244 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 47, 306, 888, 1130, 1361, 1400, 1713, 1894 |
| NciI | CCSGG | 2 cut(s) | 178, 805 |
| NcoI | CCATGG | 1 cut(s) | 2316 |
| NdeII | GATC | 8 cut(s) | 218, 698, 996, 1093, 1268, 1283, 2200, 2650 |
| NlaIV | GGNNCC | 7 cut(s) | 220, 745, 746, 942, 1285, 1542, 1609 |
| NmuCI | GTSAC | 3 cut(s) | 65, 397, 1462 |
| NspI | RCATGY | 4 cut(s) | 1056, 1410, 1968, 2684 |
| PaeI | GCATGC | 2 cut(s) | 1056, 1410 |
| PagI | TCATGA | 2 cut(s) | 391, 2674 |
| PceI | AGGCCT | 2 cut(s) | 1850, 2628 |
| PciI | ACATGT | 1 cut(s) | 1964 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1142 |
| PctI | GAATGC | 1 cut(s) | 1699 |
| PdmI | GAANNNNTTC | 2 cut(s) | 300, 486 |
| PfeI | GAWTC | 9 cut(s) | 35, 136, 425, 793, 1076, 1229, 1513, 1748, 1840 |
| PkrI | GCNGC | 8 cut(s) | 43, 600, 763, 1198, 1344, 1402, 1405, 2013 |
| PleI | GAGTC | 5 cut(s) | 181, 335, 1175, 1459, 2545 |
| PpsI | GAGTC | 5 cut(s) | 181, 335, 1175, 1459, 2545 |
| PpuMI | RGGWCCY | 1 cut(s) | 744 |
| PscI | ACATGT | 1 cut(s) | 1964 |
| PshBI | ATTAAT | 1 cut(s) | 2178 |
| Psp1406I | AACGTT | 1 cut(s) | 2053 |
| Psp5II | RGGWCCY | 1 cut(s) | 744 |
| Psp6I | CCWGG | 2 cut(s) | 1778, 2242 |
| PspEI | GGTNACC | 1 cut(s) | 2262 |
| PspFI | CCCAGC | 1 cut(s) | 1442 |
| PspGI | CCWGG | 2 cut(s) | 1778, 2242 |
| PspN4I | GGNNCC | 7 cut(s) | 220, 745, 746, 942, 1285, 1542, 1609 |
| PspPI | GGNCC | 5 cut(s) | 179, 359, 744, 1123, 1919 |
| PspPPI | RGGWCCY | 1 cut(s) | 744 |
| PstI | CTGCAG | 1 cut(s) | 1264 |
| PstNI | CAGNNNCTG | 4 cut(s) | 848, 1476, 2249, 2491 |
| PsuI | RGATCY | 3 cut(s) | 218, 1093, 1283 |
| PvuII | CAGCTG | 1 cut(s) | 2558 |
| RsaI | GTAC | 7 cut(s) | 1295, 1310, 1475, 1905, 2076, 2592, 2760 |
| RsaNI | GTAC | 7 cut(s) | 1294, 1309, 1474, 1904, 2075, 2591, 2759 |
| RseI | CAYNNNNRTG | 6 cut(s) | 150, 1191, 1350, 1869, 2208, 2679 |
| SaqAI | TTAA | 5 cut(s) | 512, 836, 1820, 2019, 2178 |
| SatI | GCNGC | 8 cut(s) | 42, 599, 762, 1197, 1343, 1401, 1404, 2012 |
| Sau3AI | GATC | 8 cut(s) | 218, 698, 996, 1093, 1268, 1283, 2200, 2650 |
| Sau96I | GGNCC | 5 cut(s) | 179, 359, 744, 1123, 1919 |
| SchI | GAGTC | 5 cut(s) | 182, 335, 1175, 1459, 2546 |
| ScrFI | CCNGG | 4 cut(s) | 178, 805, 1780, 2244 |
| SduI | GDGCHC | 1 cut(s) | 311 |
| SfcI | CTRYAG | 5 cut(s) | 1260, 1395, 2439, 2547, 2774 |
| SinI | GGWCC | 1 cut(s) | 744 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 150, 1191, 1350, 1869, 2208, 2679 |
| SmlI | CTYRAG | 4 cut(s) | 781, 1097, 1481, 1790 |
| SmoI | CTYRAG | 4 cut(s) | 781, 1097, 1481, 1790 |
| SphI | GCATGC | 2 cut(s) | 1056, 1410 |
| SseBI | AGGCCT | 2 cut(s) | 1850, 2628 |
| SsiI | CCGC | 4 cut(s) | 48, 1131, 1151, 2313 |
| SspI | AATATT | 2 cut(s) | 900, 2400 |
| StuI | AGGCCT | 2 cut(s) | 1850, 2628 |
| StyD4I | CCNGG | 4 cut(s) | 176, 803, 1778, 2242 |
| StyI | CCWWGG | 5 cut(s) | 228, 609, 1958, 2267, 2316 |
| TaaI | ACNGT | 8 cut(s) | 214, 863, 1219, 1478, 2251, 2478, 2528, 2775 |
| TaiI | ACGT | 3 cut(s) | 106, 445, 2056 |
| TaqI | TCGA | 6 cut(s) | 1271, 1389, 1757, 2127, 2509, 2661 |
| TatI | WGTACW | 5 cut(s) | 1293, 1308, 2074, 2590, 2758 |
| TfiI | GAWTC | 9 cut(s) | 35, 136, 425, 793, 1076, 1229, 1513, 1748, 1840 |
| Tru1I | TTAA | 5 cut(s) | 512, 836, 1820, 2019, 2178 |
| Tru9I | TTAA | 5 cut(s) | 512, 836, 1820, 2019, 2178 |
| TscAI | CASTG | 5 cut(s) | 311, 1551, 1609, 1660, 2163 |
| TseFI | GTSAC | 3 cut(s) | 65, 397, 1462 |
| TseI | GCWGC | 8 cut(s) | 41, 598, 761, 1196, 1342, 1400, 1403, 2011 |
| Tsp45I | GTSAC | 3 cut(s) | 65, 397, 1462 |
| TspGWI | ACGGA | 1 cut(s) | 662 |
| TspRI | CASTG | 5 cut(s) | 311, 1551, 1609, 1660, 2163 |
| VpaK11BI | GGWCC | 1 cut(s) | 744 |
| VspI | ATTAAT | 1 cut(s) | 2178 |
| XapI | RAATTY | 4 cut(s) | 376, 718, 1632, 2330 |
| XceI | RCATGY | 4 cut(s) | 1056, 1410, 1968, 2684 |
| XmaJI | CCTAGG | 1 cut(s) | 1958 |
| XmnI | GAANNNNTTC | 2 cut(s) | 300, 486 |