protease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 367 |
| AccIII | TCCGGA | 1 cut(s) | 273 |
| AciI | CCGC | 2 cut(s) | 300, 414 |
| AclWI | GGATC | 3 cut(s) | 170, 382, 405 |
| AcoI | YGGCCR | 1 cut(s) | 59 |
| AfaI | GTAC | 2 cut(s) | 131, 222 |
| AgsI | TTSAA | 2 cut(s) | 198, 205 |
| AluBI | AGCT | 2 cut(s) | 145, 238 |
| AluI | AGCT | 2 cut(s) | 145, 238 |
| AlwI | GGATC | 3 cut(s) | 170, 382, 405 |
| Aor13HI | TCCGGA | 1 cut(s) | 273 |
| AoxI | GGCC | 1 cut(s) | 59 |
| AspS9I | GGNCC | 1 cut(s) | 271 |
| AvaII | GGWCC | 1 cut(s) | 271 |
| AxyI | CCTNAGG | 1 cut(s) | 331 |
| BceAI | ACGGC | 1 cut(s) | 45 |
| Bme18I | GGWCC | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 1 cut(s) | 271 |
| BmsI | GCATC | 1 cut(s) | 12 |
| BsaJI | CCNNGG | 1 cut(s) | 352 |
| BsaWI | WCCGGW | 1 cut(s) | 273 |
| Bse1I | ACTGG | 1 cut(s) | 62 |
| Bse21I | CCTNAGG | 1 cut(s) | 331 |
| Bse3DI | GCAATG | 1 cut(s) | 32 |
| BseAI | TCCGGA | 1 cut(s) | 273 |
| BseDI | CCNNGG | 1 cut(s) | 352 |
| BseMI | GCAATG | 1 cut(s) | 32 |
| BseMII | CTCAG | 1 cut(s) | 345 |
| BseNI | ACTGG | 1 cut(s) | 62 |
| BshFI | GGCC | 1 cut(s) | 61 |
| BsiSI | CCGG | 2 cut(s) | 62, 274 |
| BsnI | GGCC | 1 cut(s) | 61 |
| Bsp13I | TCCGGA | 1 cut(s) | 273 |
| Bsp143I | GATC | 3 cut(s) | 162, 374, 410 |
| BspACI | CCGC | 2 cut(s) | 300, 414 |
| BspANI | GGCC | 1 cut(s) | 61 |
| BspCNI | CTCAG | 1 cut(s) | 344 |
| BspEI | TCCGGA | 1 cut(s) | 273 |
| BspPI | GGATC | 3 cut(s) | 170, 382, 405 |
| BsrDI | GCAATG | 1 cut(s) | 32 |
| BsrI | ACTGG | 1 cut(s) | 62 |
| BssECI | CCNNGG | 1 cut(s) | 352 |
| BssMI | GATC | 3 cut(s) | 162, 374, 410 |
| Bst4CI | ACNGT | 2 cut(s) | 177, 398 |
| BstDEI | CTNAG | 2 cut(s) | 267, 331 |
| BstKTI | GATC | 3 cut(s) | 165, 377, 413 |
| BstMBI | GATC | 3 cut(s) | 162, 374, 410 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu36I | CCTNAGG | 1 cut(s) | 331 |
| BsuRI | GGCC | 1 cut(s) | 61 |
| Cfr13I | GGNCC | 1 cut(s) | 271 |
| Csp6I | GTAC | 2 cut(s) | 130, 221 |
| CviJI | RGCY | 6 cut(s) | 61, 145, 159, 238, 317, 329 |
| CviKI_1 | RGCY | 6 cut(s) | 61, 145, 159, 238, 317, 329 |
| CviQI | GTAC | 2 cut(s) | 130, 221 |
| DdeI | CTNAG | 2 cut(s) | 267, 331 |
| DpnI | GATC | 3 cut(s) | 164, 376, 412 |
| DpnII | GATC | 3 cut(s) | 162, 374, 410 |
| EaeI | YGGCCR | 1 cut(s) | 59 |
| Eco47I | GGWCC | 1 cut(s) | 271 |
| Eco81I | CCTNAGG | 1 cut(s) | 331 |
| FaiI | YATR | 9 cut(s) | 47, 49, 51, 68, 173, 180, 245, 320, 421 |
| FblI | GTMKAC | 1 cut(s) | 367 |
| HaeIII | GGCC | 1 cut(s) | 61 |
| HapII | CCGG | 2 cut(s) | 62, 274 |
| HindIII | AAGCTT | 1 cut(s) | 236 |
| HinfI | GANTC | 1 cut(s) | 283 |
| HpaII | CCGG | 2 cut(s) | 62, 274 |
| Hpy166II | GTNNAC | 2 cut(s) | 130, 368 |
| Hpy188I | TCNGA | 2 cut(s) | 7, 353 |
| Hpy188III | TCNNGA | 1 cut(s) | 274 |
| Hpy8I | GTNNAC | 2 cut(s) | 130, 368 |
| HpyAV | CCTTC | 2 cut(s) | 116, 199 |
| HpyCH4III | ACNGT | 2 cut(s) | 177, 398 |
| HpyF3I | CTNAG | 2 cut(s) | 267, 331 |
| Kpn2I | TCCGGA | 1 cut(s) | 273 |
| Kzo9I | GATC | 3 cut(s) | 162, 374, 410 |
| LpnPI | CCDG | 7 cut(s) | 43, 75, 145, 241, 282, 287, 318 |
| LweI | GCATC | 1 cut(s) | 12 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 3 cut(s) | 164, 376, 412 |
| MboI | GATC | 3 cut(s) | 162, 374, 410 |
| MboII | GAAGA | 4 cut(s) | 20, 66, 110, 420 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MluCI | AATT | 2 cut(s) | 13, 69 |
| MlyI | GAGTC | 1 cut(s) | 277 |
| MmeI | TCCRAC | 1 cut(s) | 367 |
| MnlI | CCTC | 4 cut(s) | 77, 181, 340, 347 |
| MroI | TCCGGA | 1 cut(s) | 273 |
| MseI | TTAA | 1 cut(s) | 117 |
| MspI | CCGG | 2 cut(s) | 62, 274 |
| NdeII | GATC | 3 cut(s) | 162, 374, 410 |
| PleI | GAGTC | 1 cut(s) | 277 |
| PpsI | GAGTC | 1 cut(s) | 277 |
| PspPI | GGNCC | 1 cut(s) | 271 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RsaI | GTAC | 2 cut(s) | 131, 222 |
| RsaNI | GTAC | 2 cut(s) | 130, 221 |
| SaqAI | TTAA | 1 cut(s) | 117 |
| Sau3AI | GATC | 3 cut(s) | 162, 374, 410 |
| Sau96I | GGNCC | 1 cut(s) | 271 |
| SchI | GAGTC | 1 cut(s) | 277 |
| SetI | ASST | 6 cut(s) | 88, 147, 192, 240, 273, 358 |
| SfaNI | GCATC | 1 cut(s) | 12 |
| SinI | GGWCC | 1 cut(s) | 271 |
| Sse9I | AATT | 2 cut(s) | 13, 69 |
| SsiI | CCGC | 2 cut(s) | 300, 414 |
| SspI | AATATT | 1 cut(s) | 263 |
| TaaI | ACNGT | 2 cut(s) | 177, 398 |
| TaqI | TCGA | 1 cut(s) | 39 |
| TasI | AATT | 2 cut(s) | 13, 69 |
| TatI | WGTACW | 1 cut(s) | 220 |
| Tru1I | TTAA | 1 cut(s) | 117 |
| Tru9I | TTAA | 1 cut(s) | 117 |
| TspDTI | ATGAA | 2 cut(s) | 135, 390 |
| VpaK11BI | GGWCC | 1 cut(s) | 271 |
| XmiI | GTMKAC | 1 cut(s) | 367 |