protease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 646 |
| Acc36I | ACCTGC | 1 cut(s) | 646 |
| AccB1I | GGYRCC | 1 cut(s) | 230 |
| AccBSI | CCGCTC | 3 cut(s) | 97, 303, 385 |
| AccI | GTMKAC | 1 cut(s) | 1204 |
| AccII | CGCG | 3 cut(s) | 174, 423, 829 |
| AccIII | TCCGGA | 1 cut(s) | 1110 |
| AciI | CCGC | 8 cut(s) | 95, 160, 172, 198, 303, 385, 423, 1137 |
| AclWI | GGATC | 4 cut(s) | 506, 1007, 1219, 1240 |
| AcoI | YGGCCR | 1 cut(s) | 424 |
| AcsI | RAATTY | 5 cut(s) | 480, 490, 579, 1553, 1630 |
| AcyI | GRCGYC | 3 cut(s) | 157, 231, 261 |
| AfaI | GTAC | 4 cut(s) | 968, 1059, 1188, 1252 |
| AgeI | ACCGGT | 1 cut(s) | 1369 |
| AgsI | TTSAA | 7 cut(s) | 64, 539, 553, 1035, 1042, 1528, 1591 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 187, 190 |
| AjnI | CCWGG | 3 cut(s) | 1207, 1303, 1497 |
| Alw26I | GTCTC | 1 cut(s) | 728 |
| AlwI | GGATC | 4 cut(s) | 506, 1007, 1219, 1240 |
| Ama87I | CYCGRG | 3 cut(s) | 54, 245, 1773 |
| Aor13HI | TCCGGA | 1 cut(s) | 1110 |
| AoxI | GGCC | 1 cut(s) | 424 |
| ApeKI | GCWGC | 9 cut(s) | 472, 503, 1280, 1358, 1397, 1427, 1571, 1658, 1733 |
| ApoI | RAATTY | 5 cut(s) | 480, 490, 579, 1553, 1630 |
| AsiGI | ACCGGT | 1 cut(s) | 1369 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 341, 579 |
| AspLEI | GCGC | 4 cut(s) | 176, 233, 423, 829 |
| AspS9I | GGNCC | 1 cut(s) | 1108 |
| AsuHPI | GGTGA | 4 cut(s) | 31, 827, 1322, 1841 |
| AvaI | CYCGRG | 3 cut(s) | 54, 245, 1773 |
| AvaII | GGWCC | 1 cut(s) | 1108 |
| AxyI | CCTNAGG | 1 cut(s) | 1168 |
| BanI | GGYRCC | 1 cut(s) | 230 |
| BbvI | GCAGC | 9 cut(s) | 459, 490, 1267, 1345, 1409, 1439, 1583, 1670, 1745 |
| BccI | CCATC | 1 cut(s) | 555 |
| BceAI | ACGGC | 4 cut(s) | 53, 99, 218, 244 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1614, 1648 |
| BciT130I | CCWGG | 3 cut(s) | 1209, 1305, 1499 |
| BciVI | GTATCC | 1 cut(s) | 1403 |
| BcoDI | GTCTC | 1 cut(s) | 728 |
| BfaI | CTAG | 2 cut(s) | 1854, 1865 |
| BfmI | CTRYAG | 1 cut(s) | 1680 |
| BfoI | RGCGCY | 1 cut(s) | 234 |
| BfuAI | ACCTGC | 1 cut(s) | 646 |
| BfuI | GTATCC | 1 cut(s) | 1403 |
| Bme1390I | CCNGG | 3 cut(s) | 1209, 1305, 1499 |
| Bme18I | GGWCC | 1 cut(s) | 1108 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 187, 190 |
| BmeT110I | CYCGRG | 3 cut(s) | 54, 245, 1773 |
| BmgT120I | GGNCC | 1 cut(s) | 1108 |
| BmiI | GGNNCC | 3 cut(s) | 79, 232, 1468 |
| BmrFI | CCNGG | 3 cut(s) | 1209, 1305, 1499 |
| BmsI | GCATC | 9 cut(s) | 351, 746, 849, 1303, 1370, 1388, 1423, 1720, 1744 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 69, 101 |
| BpmI | CTGGAG | 2 cut(s) | 442, 1326 |
| BpuEI | CTTGAG | 2 cut(s) | 779, 1781 |
| BsaHI | GRCGYC | 3 cut(s) | 157, 231, 261 |
| BsaI | GGTCTC | 1 cut(s) | 728 |
| BsaJI | CCNNGG | 4 cut(s) | 246, 377, 1303, 1498 |
| BsaWI | WCCGGW | 2 cut(s) | 1110, 1369 |
| Bse118I | RCCGGY | 1 cut(s) | 1369 |
| Bse1I | ACTGG | 3 cut(s) | 459, 899, 1468 |
| Bse21I | CCTNAGG | 1 cut(s) | 1168 |
| Bse3DI | GCAATG | 3 cut(s) | 416, 869, 1374 |
| BseAI | TCCGGA | 1 cut(s) | 1110 |
| BseBI | CCWGG | 3 cut(s) | 1209, 1305, 1499 |
| BseDI | CCNNGG | 4 cut(s) | 246, 377, 1303, 1498 |
| BseGI | GGATG | 2 cut(s) | 366, 566 |
| BseMI | GCAATG | 3 cut(s) | 416, 869, 1374 |
| BseMII | CTCAG | 2 cut(s) | 739, 1182 |
| BseNI | ACTGG | 3 cut(s) | 459, 899, 1468 |
| BseRI | GAGGAG | 5 cut(s) | 8, 89, 126, 129, 132 |
| BseXI | GCAGC | 9 cut(s) | 459, 490, 1267, 1345, 1409, 1439, 1583, 1670, 1745 |
| BsgI | GTGCAG | 1 cut(s) | 1608 |
| Bsh1236I | CGCG | 3 cut(s) | 174, 423, 829 |
| Bsh1285I | CGRYCG | 1 cut(s) | 222 |
| BshFI | GGCC | 1 cut(s) | 426 |
| BshNI | GGYRCC | 1 cut(s) | 230 |
| BshTI | ACCGGT | 1 cut(s) | 1369 |
| BsiEI | CGRYCG | 1 cut(s) | 222 |
| BsiHKCI | CYCGRG | 3 cut(s) | 54, 245, 1773 |
| BsiSI | CCGG | 2 cut(s) | 1111, 1370 |
| BslFI | GGGAC | 1 cut(s) | 1664 |
| BsmAI | GTCTC | 1 cut(s) | 728 |
| BsmFI | GGGAC | 1 cut(s) | 1664 |
| BsmI | GAATGC | 1 cut(s) | 274 |
| BsnI | GGCC | 1 cut(s) | 426 |
| Bso31I | GGTCTC | 1 cut(s) | 728 |
| BsoBI | CYCGRG | 3 cut(s) | 54, 245, 1773 |
| Bsp13I | TCCGGA | 1 cut(s) | 1110 |
| Bsp143I | GATC | 6 cut(s) | 436, 511, 999, 1211, 1245, 1670 |
| BspACI | CCGC | 8 cut(s) | 95, 160, 172, 198, 303, 385, 423, 1137 |
| BspANI | GGCC | 1 cut(s) | 426 |
| BspCNI | CTCAG | 2 cut(s) | 738, 1181 |
| BspEI | TCCGGA | 1 cut(s) | 1110 |
| BspFNI | CGCG | 3 cut(s) | 174, 423, 829 |
| BspLI | GGNNCC | 3 cut(s) | 79, 232, 1468 |
| BspMI | ACCTGC | 1 cut(s) | 646 |
| BspPI | GGATC | 4 cut(s) | 506, 1007, 1219, 1240 |
| BspQI | GCTCTTC | 1 cut(s) | 332 |
| BspT107I | GGYRCC | 1 cut(s) | 230 |
| BspTNI | GGTCTC | 1 cut(s) | 728 |
| BsrBI | CCGCTC | 3 cut(s) | 97, 303, 385 |
| BsrDI | GCAATG | 3 cut(s) | 416, 869, 1374 |
| BsrFI | RCCGGY | 1 cut(s) | 1369 |
| BsrI | ACTGG | 3 cut(s) | 459, 899, 1468 |
| BssAI | RCCGGY | 1 cut(s) | 1369 |
| BssECI | CCNNGG | 4 cut(s) | 246, 377, 1303, 1498 |
| BssMI | GATC | 6 cut(s) | 436, 511, 999, 1211, 1245, 1670 |
| BssNI | GRCGYC | 3 cut(s) | 157, 231, 261 |
| BssT1I | CCWWGG | 1 cut(s) | 377 |
| Bst2UI | CCWGG | 3 cut(s) | 1209, 1305, 1499 |
| Bst4CI | ACNGT | 5 cut(s) | 557, 1014, 1233, 1509, 1681 |
| Bst6I | CTCTTC | 2 cut(s) | 332, 984 |
| BstACI | GRCGYC | 3 cut(s) | 157, 231, 261 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1433 |
| BstC8I | GCNNGC | 1 cut(s) | 328 |
| BstDEI | CTNAG | 4 cut(s) | 725, 1104, 1168, 1617 |
| BstEII | GGTNACC | 1 cut(s) | 815 |
| BstF5I | GGATG | 2 cut(s) | 366, 566 |
| BstFNI | CGCG | 3 cut(s) | 174, 423, 829 |
| BstH2I | RGCGCY | 1 cut(s) | 234 |
| BstHHI | GCGC | 4 cut(s) | 176, 233, 423, 829 |
| BstKTI | GATC | 6 cut(s) | 439, 514, 1002, 1214, 1248, 1673 |
| BstMAI | GTCTC | 1 cut(s) | 728 |
| BstMBI | GATC | 6 cut(s) | 436, 511, 999, 1211, 1245, 1670 |
| BstMCI | CGRYCG | 1 cut(s) | 222 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 65, 239, 248, 269, 361, 1427, 1433, 1442, 1622 |
| BstNI | CCWGG | 3 cut(s) | 1209, 1305, 1499 |
| BstPI | GGTNACC | 1 cut(s) | 815 |
| BstSCI | CCNGG | 3 cut(s) | 1207, 1303, 1497 |
| BstSFI | CTRYAG | 1 cut(s) | 1680 |
| BstUI | CGCG | 3 cut(s) | 174, 423, 829 |
| BstV1I | GCAGC | 9 cut(s) | 459, 490, 1267, 1345, 1409, 1439, 1583, 1670, 1745 |
| BstX2I | RGATCY | 1 cut(s) | 1245 |
| BstYI | RGATCY | 1 cut(s) | 1245 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1168 |
| BsuI | GTATCC | 1 cut(s) | 1403 |
| BsuRI | GGCC | 1 cut(s) | 426 |
| BtsCI | GGATG | 2 cut(s) | 366, 566 |
| BtsI | GCAGTG | 1 cut(s) | 109 |
| BtsIMutI | CAGTG | 4 cut(s) | 109, 466, 733, 1854 |
| BveI | ACCTGC | 1 cut(s) | 646 |
| Cac8I | GCNNGC | 1 cut(s) | 328 |
| CfoI | GCGC | 4 cut(s) | 176, 233, 423, 829 |
| Cfr10I | RCCGGY | 1 cut(s) | 1369 |
| Cfr13I | GGNCC | 1 cut(s) | 1108 |
| CseI | GACGC | 3 cut(s) | 165, 269, 391 |
| Csp6I | GTAC | 4 cut(s) | 967, 1058, 1187, 1251 |
| CspAI | ACCGGT | 1 cut(s) | 1369 |
| CviAII | CATG | 2 cut(s) | 412, 838 |
| CviQI | GTAC | 4 cut(s) | 967, 1058, 1187, 1251 |
| DdeI | CTNAG | 4 cut(s) | 725, 1104, 1168, 1617 |
| DinI | GGCGCC | 1 cut(s) | 232 |
| DpnI | GATC | 6 cut(s) | 438, 513, 1001, 1213, 1247, 1672 |
| DpnII | GATC | 6 cut(s) | 436, 511, 999, 1211, 1245, 1670 |
| DriI | GACNNNNNGTC | 2 cut(s) | 187, 190 |
| EaeI | YGGCCR | 1 cut(s) | 424 |
| Eam1104I | CTCTTC | 2 cut(s) | 332, 984 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 187, 190 |
| EarI | CTCTTC | 2 cut(s) | 332, 984 |
| EciI | GGCGGA | 1 cut(s) | 187 |
| Eco130I | CCWWGG | 1 cut(s) | 377 |
| Eco31I | GGTCTC | 1 cut(s) | 728 |
| Eco47I | GGWCC | 1 cut(s) | 1108 |
| Eco81I | CCTNAGG | 1 cut(s) | 1168 |
| Eco88I | CYCGRG | 3 cut(s) | 54, 245, 1773 |
| Eco91I | GGTNACC | 1 cut(s) | 815 |
| EcoO65I | GGTNACC | 1 cut(s) | 815 |
| EcoRI | GAATTC | 1 cut(s) | 1630 |
| EcoRII | CCWGG | 3 cut(s) | 1207, 1303, 1497 |
| EcoT14I | CCWWGG | 1 cut(s) | 377 |
| EgeI | GGCGCC | 1 cut(s) | 232 |
| EheI | GGCGCC | 1 cut(s) | 232 |
| ErhI | CCWWGG | 1 cut(s) | 377 |
| FaeI | CATG | 2 cut(s) | 415, 841 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1508, 1540 |
| FaqI | GGGAC | 1 cut(s) | 1664 |
| FatI | CATG | 2 cut(s) | 411, 837 |
| FauI | CCCGC | 1 cut(s) | 378 |
| FblI | GTMKAC | 1 cut(s) | 1204 |
| FokI | GGATG | 2 cut(s) | 373, 573 |
| FspBI | CTAG | 2 cut(s) | 1854, 1865 |
| GlaI | GCGC | 4 cut(s) | 175, 232, 422, 828 |
| GsuI | CTGGAG | 2 cut(s) | 442, 1326 |
| HaeII | RGCGCY | 1 cut(s) | 234 |
| HaeIII | GGCC | 1 cut(s) | 426 |
| HapII | CCGG | 2 cut(s) | 1111, 1370 |
| HgaI | GACGC | 3 cut(s) | 165, 269, 391 |
| HhaI | GCGC | 4 cut(s) | 176, 233, 423, 829 |
| Hin1I | GRCGYC | 3 cut(s) | 157, 231, 261 |
| Hin1II | CATG | 2 cut(s) | 415, 841 |
| Hin6I | GCGC | 4 cut(s) | 174, 231, 421, 827 |
| HinP1I | GCGC | 4 cut(s) | 174, 231, 421, 827 |
| HindIII | AAGCTT | 1 cut(s) | 353 |
| HinfI | GANTC | 7 cut(s) | 13, 185, 215, 448, 453, 1120, 1262 |
| HpaII | CCGG | 2 cut(s) | 1111, 1370 |
| HphI | GGTGA | 4 cut(s) | 31, 827, 1322, 1841 |
| Hpy166II | GTNNAC | 4 cut(s) | 967, 1187, 1205, 1766 |
| Hpy8I | GTNNAC | 4 cut(s) | 967, 1187, 1205, 1766 |
| Hpy99I | CGWCG | 9 cut(s) | 74, 77, 159, 185, 193, 196, 263, 286, 350 |
| HpyAV | CCTTC | 6 cut(s) | 70, 187, 388, 953, 1036, 1597 |
| HpyCH4III | ACNGT | 5 cut(s) | 557, 1014, 1233, 1509, 1681 |
| HpyCH4V | TGCA | 9 cut(s) | 1361, 1379, 1445, 1559, 1571, 1625, 1703, 1733, 1784 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 65, 239, 248, 269, 361, 1427, 1433, 1442, 1622 |
| HpyF3I | CTNAG | 4 cut(s) | 725, 1104, 1168, 1617 |
| Hsp92I | GRCGYC | 3 cut(s) | 157, 231, 261 |
| Hsp92II | CATG | 2 cut(s) | 415, 841 |
| HspAI | GCGC | 4 cut(s) | 174, 231, 421, 827 |
| KasI | GGCGCC | 1 cut(s) | 230 |
| Kpn2I | TCCGGA | 1 cut(s) | 1110 |
| Kzo9I | GATC | 6 cut(s) | 436, 511, 999, 1211, 1245, 1670 |
| LguI | GCTCTTC | 1 cut(s) | 332 |
| LmnI | GCTCC | 4 cut(s) | 77, 102, 247, 382 |
| Lsp1109I | GCAGC | 9 cut(s) | 459, 490, 1267, 1345, 1409, 1439, 1583, 1670, 1745 |
| LweI | GCATC | 9 cut(s) | 351, 746, 849, 1303, 1370, 1388, 1423, 1720, 1744 |
| MaeI | CTAG | 2 cut(s) | 1854, 1865 |
| MaeIII | GTNAC | 4 cut(s) | 815, 1027, 1480, 1829 |
| MalI | GATC | 6 cut(s) | 438, 513, 1001, 1213, 1247, 1672 |
| MbiI | CCGCTC | 3 cut(s) | 97, 303, 385 |
| MboI | GATC | 6 cut(s) | 436, 511, 999, 1211, 1245, 1670 |
| MflI | RGATCY | 1 cut(s) | 1245 |
| Mly113I | GGCGCC | 1 cut(s) | 231 |
| MlyI | GAGTC | 3 cut(s) | 179, 457, 1114 |
| MmeI | TCCRAC | 3 cut(s) | 55, 178, 1204 |
| MroI | TCCGGA | 1 cut(s) | 1110 |
| MroXI | GAANNNNTTC | 2 cut(s) | 341, 579 |
| MseI | TTAA | 5 cut(s) | 443, 954, 1460, 1494, 1882 |
| MspA1I | CMGCKG | 1 cut(s) | 1574 |
| MspI | CCGG | 2 cut(s) | 1111, 1370 |
| MspR9I | CCNGG | 3 cut(s) | 1209, 1305, 1499 |
| Mva1269I | GAATGC | 1 cut(s) | 274 |
| MvaI | CCWGG | 3 cut(s) | 1209, 1305, 1499 |
| MvnI | CGCG | 3 cut(s) | 174, 423, 829 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 65, 239, 248, 269, 361, 1427, 1433, 1442, 1622 |
| NarI | GGCGCC | 1 cut(s) | 231 |
| NdeII | GATC | 6 cut(s) | 436, 511, 999, 1211, 1245, 1670 |
| NlaIII | CATG | 2 cut(s) | 415, 841 |
| NlaIV | GGNNCC | 3 cut(s) | 79, 232, 1468 |
| NmeAIII | GCCGAG | 1 cut(s) | 289 |
| NmuCI | GTSAC | 3 cut(s) | 815, 1480, 1829 |
| PaqCI | CACCTGC | 1 cut(s) | 646 |
| PciSI | GCTCTTC | 1 cut(s) | 332 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 219 |
| PctI | GAATGC | 1 cut(s) | 274 |
| PdmI | GAANNNNTTC | 2 cut(s) | 341, 579 |
| PfeI | GAWTC | 4 cut(s) | 13, 215, 453, 1262 |
| PflFI | GACNNNGTC | 1 cut(s) | 838 |
| PinAI | ACCGGT | 1 cut(s) | 1369 |
| PleI | GAGTC | 3 cut(s) | 179, 456, 1114 |
| PluTI | GGCGCC | 1 cut(s) | 234 |
| PpsI | GAGTC | 3 cut(s) | 179, 456, 1114 |
| Psp6I | CCWGG | 3 cut(s) | 1207, 1303, 1497 |
| PspEI | GGTNACC | 1 cut(s) | 815 |
| PspGI | CCWGG | 3 cut(s) | 1207, 1303, 1497 |
| PspN4I | GGNNCC | 3 cut(s) | 79, 232, 1468 |
| PspPI | GGNCC | 1 cut(s) | 1108 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 738, 770 |
| PsuI | RGATCY | 1 cut(s) | 1245 |
| PsyI | GACNNNGTC | 1 cut(s) | 838 |
| PvuII | CAGCTG | 1 cut(s) | 1574 |
| RsaI | GTAC | 4 cut(s) | 968, 1059, 1188, 1252 |
| RsaNI | GTAC | 4 cut(s) | 967, 1058, 1187, 1251 |
| SapI | GCTCTTC | 1 cut(s) | 332 |
| SaqAI | TTAA | 5 cut(s) | 443, 954, 1460, 1494, 1882 |
| Sau3AI | GATC | 6 cut(s) | 436, 511, 999, 1211, 1245, 1670 |
| Sau96I | GGNCC | 1 cut(s) | 1108 |
| SchI | GAGTC | 3 cut(s) | 179, 457, 1114 |
| ScrFI | CCNGG | 3 cut(s) | 1209, 1305, 1499 |
| SfaNI | GCATC | 9 cut(s) | 351, 746, 849, 1303, 1370, 1388, 1423, 1720, 1744 |
| SfcI | CTRYAG | 1 cut(s) | 1680 |
| SfoI | GGCGCC | 1 cut(s) | 232 |
| SinI | GGWCC | 1 cut(s) | 1108 |
| SmlI | CTYRAG | 2 cut(s) | 758, 1796 |
| SmoI | CTYRAG | 2 cut(s) | 758, 1796 |
| SsiI | CCGC | 8 cut(s) | 95, 160, 172, 198, 303, 385, 423, 1137 |
| SspDI | GGCGCC | 1 cut(s) | 230 |
| SspI | AATATT | 1 cut(s) | 1100 |
| SspMI | CTAG | 2 cut(s) | 1854, 1865 |
| StyD4I | CCNGG | 3 cut(s) | 1207, 1303, 1497 |
| StyI | CCWWGG | 1 cut(s) | 377 |
| TaaI | ACNGT | 5 cut(s) | 557, 1014, 1233, 1509, 1681 |
| TaqI | TCGA | 8 cut(s) | 5, 180, 218, 258, 451, 517, 876, 1739 |
| TaqII | GACCGA | 1 cut(s) | 236 |
| TatI | WGTACW | 1 cut(s) | 1057 |
| TauI | GCSGC | 4 cut(s) | 97, 162, 306, 426 |
| TfiI | GAWTC | 4 cut(s) | 13, 215, 453, 1262 |
| Tru1I | TTAA | 5 cut(s) | 443, 954, 1460, 1494, 1882 |
| Tru9I | TTAA | 5 cut(s) | 443, 954, 1460, 1494, 1882 |
| TscAI | CASTG | 4 cut(s) | 116, 466, 733, 1854 |
| TseFI | GTSAC | 3 cut(s) | 815, 1480, 1829 |
| TseI | GCWGC | 9 cut(s) | 472, 503, 1280, 1358, 1397, 1427, 1571, 1658, 1733 |
| Tsp45I | GTSAC | 3 cut(s) | 815, 1480, 1829 |
| TspDTI | ATGAA | 2 cut(s) | 972, 1225 |
| TspGWI | ACGGA | 2 cut(s) | 299, 1238 |
| TspRI | CASTG | 4 cut(s) | 116, 466, 733, 1854 |
| Tth111I | GACNNNGTC | 1 cut(s) | 838 |
| VpaK11BI | GGWCC | 1 cut(s) | 1108 |
| XapI | RAATTY | 5 cut(s) | 480, 490, 579, 1553, 1630 |
| XmiI | GTMKAC | 1 cut(s) | 1204 |
| XmnI | GAANNNNTTC | 2 cut(s) | 341, 579 |
| XspI | CTAG | 2 cut(s) | 1854, 1865 |