protease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 367 |
| AccIII | TCCGGA | 1 cut(s) | 273 |
| AciI | CCGC | 1 cut(s) | 300 |
| AclWI | GGATC | 3 cut(s) | 170, 382, 403 |
| AcsI | RAATTY | 1 cut(s) | 110 |
| AfaI | GTAC | 4 cut(s) | 131, 222, 351, 415 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 273 |
| AgsI | TTSAA | 3 cut(s) | 107, 198, 205 |
| AjnI | CCWGG | 1 cut(s) | 370 |
| AluBI | AGCT | 2 cut(s) | 145, 238 |
| AluI | AGCT | 2 cut(s) | 145, 238 |
| AlwI | GGATC | 3 cut(s) | 170, 382, 403 |
| Aor13HI | TCCGGA | 1 cut(s) | 273 |
| ApoI | RAATTY | 1 cut(s) | 110 |
| AspS9I | GGNCC | 1 cut(s) | 271 |
| AvaII | GGWCC | 1 cut(s) | 271 |
| AxyI | CCTNAGG | 1 cut(s) | 331 |
| BciT130I | CCWGG | 1 cut(s) | 372 |
| Bme1390I | CCNGG | 1 cut(s) | 372 |
| Bme18I | GGWCC | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 1 cut(s) | 271 |
| BmrFI | CCNGG | 1 cut(s) | 372 |
| BmsI | GCATC | 1 cut(s) | 12 |
| BsaJI | CCNNGG | 1 cut(s) | 267 |
| BsaWI | WCCGGW | 1 cut(s) | 273 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 273 |
| Bse1I | ACTGG | 1 cut(s) | 62 |
| Bse21I | CCTNAGG | 1 cut(s) | 331 |
| Bse3DI | GCAATG | 1 cut(s) | 32 |
| BseAI | TCCGGA | 1 cut(s) | 273 |
| BseBI | CCWGG | 1 cut(s) | 372 |
| BseDI | CCNNGG | 1 cut(s) | 267 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 273 |
| BseMI | GCAATG | 1 cut(s) | 32 |
| BseMII | CTCAG | 1 cut(s) | 345 |
| BseNI | ACTGG | 1 cut(s) | 62 |
| BsiSI | CCGG | 1 cut(s) | 274 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 273 |
| Bsp13I | TCCGGA | 1 cut(s) | 273 |
| Bsp143I | GATC | 3 cut(s) | 162, 374, 408 |
| BspACI | CCGC | 1 cut(s) | 300 |
| BspCNI | CTCAG | 1 cut(s) | 344 |
| BspEI | TCCGGA | 1 cut(s) | 273 |
| BspPI | GGATC | 3 cut(s) | 170, 382, 403 |
| BsrDI | GCAATG | 1 cut(s) | 32 |
| BsrI | ACTGG | 1 cut(s) | 62 |
| BssECI | CCNNGG | 1 cut(s) | 267 |
| BssMI | GATC | 3 cut(s) | 162, 374, 408 |
| BssT1I | CCWWGG | 1 cut(s) | 267 |
| Bst2UI | CCWGG | 1 cut(s) | 372 |
| Bst4CI | ACNGT | 2 cut(s) | 177, 396 |
| Bst6I | CTCTTC | 1 cut(s) | 147 |
| BstDEI | CTNAG | 1 cut(s) | 331 |
| BstKTI | GATC | 3 cut(s) | 165, 377, 411 |
| BstMBI | GATC | 3 cut(s) | 162, 374, 408 |
| BstNI | CCWGG | 1 cut(s) | 372 |
| BstSCI | CCNGG | 1 cut(s) | 370 |
| BstX2I | RGATCY | 1 cut(s) | 408 |
| BstYI | RGATCY | 1 cut(s) | 408 |
| Bsu36I | CCTNAGG | 1 cut(s) | 331 |
| Cfr13I | GGNCC | 1 cut(s) | 271 |
| Csp6I | GTAC | 4 cut(s) | 130, 221, 350, 414 |
| CviJI | RGCY | 6 cut(s) | 61, 145, 159, 238, 317, 329 |
| CviKI_1 | RGCY | 6 cut(s) | 61, 145, 159, 238, 317, 329 |
| CviQI | GTAC | 4 cut(s) | 130, 221, 350, 414 |
| DdeI | CTNAG | 1 cut(s) | 331 |
| DpnI | GATC | 3 cut(s) | 164, 376, 410 |
| DpnII | GATC | 3 cut(s) | 162, 374, 408 |
| Eam1104I | CTCTTC | 1 cut(s) | 147 |
| EarI | CTCTTC | 1 cut(s) | 147 |
| Eco130I | CCWWGG | 1 cut(s) | 267 |
| Eco47I | GGWCC | 1 cut(s) | 271 |
| Eco81I | CCTNAGG | 1 cut(s) | 331 |
| EcoRII | CCWGG | 1 cut(s) | 370 |
| EcoT14I | CCWWGG | 1 cut(s) | 267 |
| ErhI | CCWWGG | 1 cut(s) | 267 |
| FaiI | YATR | 9 cut(s) | 47, 49, 51, 68, 173, 180, 245, 320, 419 |
| FblI | GTMKAC | 1 cut(s) | 367 |
| HapII | CCGG | 1 cut(s) | 274 |
| HpaII | CCGG | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 3 cut(s) | 130, 350, 368 |
| Hpy188I | TCNGA | 1 cut(s) | 7 |
| Hpy188III | TCNNGA | 1 cut(s) | 274 |
| Hpy8I | GTNNAC | 3 cut(s) | 130, 350, 368 |
| HpyAV | CCTTC | 2 cut(s) | 116, 199 |
| HpyCH4III | ACNGT | 2 cut(s) | 177, 396 |
| HpyF3I | CTNAG | 1 cut(s) | 331 |
| Kpn2I | TCCGGA | 1 cut(s) | 273 |
| Kzo9I | GATC | 3 cut(s) | 162, 374, 408 |
| LmnI | GCTCC | 1 cut(s) | 243 |
| LpnPI | CCDG | 9 cut(s) | 43, 47, 145, 241, 282, 287, 318, 357, 384 |
| LweI | GCATC | 1 cut(s) | 12 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 3 cut(s) | 164, 376, 410 |
| MboI | GATC | 3 cut(s) | 162, 374, 408 |
| MboII | GAAGA | 5 cut(s) | 20, 66, 110, 164, 418 |
| MflI | RGATCY | 1 cut(s) | 408 |
| MluCI | AATT | 3 cut(s) | 13, 69, 110 |
| MmeI | TCCRAC | 1 cut(s) | 367 |
| MnlI | CCTC | 5 cut(s) | 77, 148, 181, 340, 347 |
| MroI | TCCGGA | 1 cut(s) | 273 |
| MseI | TTAA | 1 cut(s) | 117 |
| MspI | CCGG | 1 cut(s) | 274 |
| MspR9I | CCNGG | 1 cut(s) | 372 |
| MvaI | CCWGG | 1 cut(s) | 372 |
| NdeII | GATC | 3 cut(s) | 162, 374, 408 |
| Psp6I | CCWGG | 1 cut(s) | 370 |
| PspGI | CCWGG | 1 cut(s) | 370 |
| PspPI | GGNCC | 1 cut(s) | 271 |
| PsuI | RGATCY | 1 cut(s) | 408 |
| RsaI | GTAC | 4 cut(s) | 131, 222, 351, 415 |
| RsaNI | GTAC | 4 cut(s) | 130, 221, 350, 414 |
| SaqAI | TTAA | 1 cut(s) | 117 |
| Sau3AI | GATC | 3 cut(s) | 162, 374, 408 |
| Sau96I | GGNCC | 1 cut(s) | 271 |
| ScrFI | CCNGG | 1 cut(s) | 372 |
| SetI | ASST | 6 cut(s) | 147, 192, 240, 273, 358, 373 |
| SfaNI | GCATC | 1 cut(s) | 12 |
| SinI | GGWCC | 1 cut(s) | 271 |
| Sse9I | AATT | 3 cut(s) | 13, 69, 110 |
| SsiI | CCGC | 1 cut(s) | 300 |
| SspI | AATATT | 2 cut(s) | 263, 340 |
| StyD4I | CCNGG | 1 cut(s) | 370 |
| StyI | CCWWGG | 1 cut(s) | 267 |
| TaaI | ACNGT | 2 cut(s) | 177, 396 |
| TaqI | TCGA | 1 cut(s) | 39 |
| TasI | AATT | 3 cut(s) | 13, 69, 110 |
| TatI | WGTACW | 1 cut(s) | 220 |
| Tru1I | TTAA | 1 cut(s) | 117 |
| Tru9I | TTAA | 1 cut(s) | 117 |
| TspDTI | ATGAA | 2 cut(s) | 135, 388 |
| TspGWI | ACGGA | 1 cut(s) | 401 |
| VpaK11BI | GGWCC | 1 cut(s) | 271 |
| XapI | RAATTY | 1 cut(s) | 110 |
| XmiI | GTMKAC | 1 cut(s) | 367 |