Rh6BG128500

protease

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
20016486 .. 20022142
5657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG128500.1

Sequence Viewer

Length: 351 bp
ATGATGATGAGGAAATATTCTAAGGTTCGGAAATGGACTCTTGGATTATCAGGCGGTAAAGACAAGATAGCCATAATAAGAGCCTCAGGCAGTATTAGCTGTGTACGAGATTCTTTTAGTCTACCTGGATCATCTCTTGTTGGAGAACAGTTCATTGAAAAGATCCGTACTATAAGAGAATCAAAAAGATACAAAGCTGCTATTATCCGAATTGACTGCCCTGGAGGATGTGGAGGGAAATCAAACTTTTGGCTGCATCAAAACCGGTCATTGTGTCAATGTCTGATGTGGCAGCAAGTGGAGGATACTATATGGCTATGGCAGCAGATGCCGTTGTTGCAGAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.32

Weight (kDa)

9.92

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 121
AciI CCGC 1 cut(s) 54
AclWI GGATC 2 cut(s) 136, 157
AfaI GTAC 2 cut(s) 105, 169
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 2 cut(s) 124, 220
AluBI AGCT 2 cut(s) 99, 197
AluI AGCT 2 cut(s) 99, 197
AlwI GGATC 2 cut(s) 136, 157
ApeKI GCWGC 4 cut(s) 197, 253, 292, 322
AsiGI ACCGGT 1 cut(s) 264
AxyI CCTNAGG 1 cut(s) 85
BbvI GCAGC 4 cut(s) 184, 240, 304, 334
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciT130I CCWGG 2 cut(s) 126, 222
BciVI GTATCC 1 cut(s) 298
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 4 cut(s) 198, 254, 293, 323
BlsI GCNGC 4 cut(s) 199, 255, 294, 324
Bme1390I CCNGG 2 cut(s) 126, 222
BmrFI CCNGG 2 cut(s) 126, 222
BmsI GCATC 2 cut(s) 265, 318
BpmI CTGGAG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 264
Bse118I RCCGGY 1 cut(s) 264
Bse21I CCTNAGG 1 cut(s) 85
BseBI CCWGG 2 cut(s) 126, 222
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 99
BseXI GCAGC 4 cut(s) 184, 240, 304, 334
BshTI ACCGGT 1 cut(s) 264
BsiSI CCGG 1 cut(s) 265
Bsp143I GATC 2 cut(s) 128, 162
BspACI CCGC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 98
BspPI GGATC 2 cut(s) 136, 157
BsrFI RCCGGY 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 128, 162
Bst2UI CCWGG 2 cut(s) 126, 222
Bst4CI ACNGT 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 21, 85
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 2 cut(s) 131, 165
BstMBI GATC 2 cut(s) 128, 162
BstMWI GCNNNNNNNGC 4 cut(s) 96, 322, 328, 337
BstNI CCWGG 2 cut(s) 126, 222
BstSCI CCNGG 2 cut(s) 124, 220
BstV1I GCAGC 4 cut(s) 184, 240, 304, 334
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
Bsu36I CCTNAGG 1 cut(s) 85
BsuI GTATCC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 264
Csp6I GTAC 2 cut(s) 104, 168
CspAI ACCGGT 1 cut(s) 264
CviJI RGCY 6 cut(s) 71, 83, 99, 197, 253, 316
CviKI_1 RGCY 6 cut(s) 71, 83, 99, 197, 253, 316
CviQI GTAC 2 cut(s) 104, 168
DdeI CTNAG 2 cut(s) 21, 85
DpnI GATC 2 cut(s) 130, 164
DpnII GATC 2 cut(s) 128, 162
Eco81I CCTNAGG 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 124, 220
FaiI YATR 5 cut(s) 74, 173, 311, 313, 319
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 4 cut(s) 198, 254, 293, 323
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 198, 254, 293, 323
GluI GCNGC 4 cut(s) 198, 254, 293, 323
GsuI CTGGAG 1 cut(s) 243
HapII CCGG 1 cut(s) 265
HinfI GANTC 3 cut(s) 37, 110, 179
HpaII CCGG 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 104, 122
Hpy188I TCNGA 3 cut(s) 30, 209, 285
Hpy8I GTNNAC 2 cut(s) 104, 122
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 256, 340
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 322, 328, 337
HpyF3I CTNAG 2 cut(s) 21, 85
Kzo9I GATC 2 cut(s) 128, 162
LpnPI CCDG 7 cut(s) 36, 72, 111, 138, 207, 234, 278
Lsp1109I GCAGC 4 cut(s) 184, 240, 304, 334
LweI GCATC 2 cut(s) 265, 318
MalI GATC 2 cut(s) 130, 164
MboI GATC 2 cut(s) 128, 162
MflI RGATCY 1 cut(s) 162
MluCI AATT 1 cut(s) 210
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 5 cut(s) 3, 94, 218, 227, 295
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 126, 222
MvaI CCWGG 2 cut(s) 126, 222
MwoI GCNNNNNNNGC 4 cut(s) 96, 322, 328, 337
NdeII GATC 2 cut(s) 128, 162
PfeI GAWTC 2 cut(s) 110, 179
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 4 cut(s) 199, 255, 294, 324
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 124, 220
PspGI CCWGG 2 cut(s) 124, 220
PsuI RGATCY 1 cut(s) 162
RsaI GTAC 2 cut(s) 105, 169
RsaNI GTAC 2 cut(s) 104, 168
SatI GCNGC 4 cut(s) 198, 254, 293, 323
Sau3AI GATC 2 cut(s) 128, 162
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 126, 222
SetI ASST 4 cut(s) 27, 101, 127, 199
SfaNI GCATC 2 cut(s) 265, 318
Sse9I AATT 1 cut(s) 210
SsiI CCGC 1 cut(s) 54
SspI AATATT 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 124, 220
TaaI ACNGT 1 cut(s) 150
TasI AATT 1 cut(s) 210
TfiI GAWTC 2 cut(s) 110, 179
TseI GCWGC 4 cut(s) 197, 253, 292, 322
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.