RchiOBHm_Chr6g0264341

protease

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
19501781 .. 19502316
536 bp
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UTR
Exon/CDS
Intron
PRQ23708

Sequence Viewer

Length: 258 bp
ATGTTGAAGGAAAGACTTGGAGTACAAAAACAGAAAAAGCTTCCTATGGTTGATTACAGGAAATATTCTAAGGTTCGGAAATGGACTCTTGGATTATCAGGCGGTAAAGACAAGATAGCCATAATAAGAGCCTCAGGCAGTAGTAGTTGTGTACGAGATTCTTTTAGTCTACCTGGATCGTCTATTGTTGGAGAACAGTTCATTGAAAAGATCCATACTATAAGAGAATCAAAAAGATACAAAGCTGCTATTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.6

Weight (kDa)

10.29

Isoelectric Point (pI)

26.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 169
AciI CCGC 1 cut(s) 102
AclWI GGATC 2 cut(s) 184, 205
AfaI GTAC 2 cut(s) 24, 153
AgsI TTSAA 2 cut(s) 7, 206
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 40, 245
AluI AGCT 2 cut(s) 40, 245
AlwI GGATC 2 cut(s) 184, 205
ApeKI GCWGC 1 cut(s) 245
AxyI CCTNAGG 1 cut(s) 133
BbvI GCAGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 174
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 174
Bse21I CCTNAGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 176, 210
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 146
BspPI GGATC 2 cut(s) 184, 205
BssMI GATC 2 cut(s) 176, 210
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 69, 133
BstKTI GATC 2 cut(s) 179, 213
BstMBI GATC 2 cut(s) 176, 210
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 133
Csp6I GTAC 2 cut(s) 23, 152
CviJI RGCY 4 cut(s) 40, 119, 131, 245
CviKI_1 RGCY 4 cut(s) 40, 119, 131, 245
CviQI GTAC 2 cut(s) 23, 152
DdeI CTNAG 2 cut(s) 69, 133
DpnI GATC 2 cut(s) 178, 212
DpnII GATC 2 cut(s) 176, 210
Eco81I CCTNAGG 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 172
FaiI YATR 4 cut(s) 47, 122, 216, 221
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 3 cut(s) 85, 158, 227
Hpy166II GTNNAC 2 cut(s) 152, 170
Hpy188I TCNGA 2 cut(s) 78, 257
Hpy8I GTNNAC 2 cut(s) 152, 170
HpyCH4III ACNGT 1 cut(s) 198
HpyF3I CTNAG 2 cut(s) 69, 133
Kzo9I GATC 2 cut(s) 176, 210
LpnPI CCDG 5 cut(s) 43, 84, 120, 159, 186
Lsp1109I GCAGC 1 cut(s) 232
MalI GATC 2 cut(s) 178, 212
MboI GATC 2 cut(s) 176, 210
MflI RGATCY 1 cut(s) 210
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
NdeII GATC 2 cut(s) 176, 210
PfeI GAWTC 2 cut(s) 158, 227
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 210
RsaI GTAC 2 cut(s) 24, 153
RsaNI GTAC 2 cut(s) 23, 152
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 176, 210
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 174
SetI ASST 4 cut(s) 42, 75, 175, 247
SgeI CNNG 9 cut(s) 29, 70, 101, 111, 124, 147, 167, 185, 186
SsiI CCGC 1 cut(s) 102
SspI AATATT 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 198
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 2 cut(s) 158, 227
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.