Rh5CG558100

protease

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
78071169 .. 78072302
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG558100.1

Sequence Viewer

Length: 540 bp
ATGTCCGAAGAAAATTGTGAGATGCTGATAGCATTGCTCGATAACATATATGGGAACTGGCTGGACATAATTTCTTCTAAGGGGCTGGACATATATGGGAACTGGCTGGAAATCAAACTTTTGGCTGCATTAAAACCGGACATTGCATTAATGTCTGACGTGGCAGCAAGTGGAGGATACTATATGGCAATGGCAGCAGATGCCATTGTTGCAGAAAATTTAACCTTAACTGGTTCCATTGGAGTAGTCACAGAGGAAGCTGAACTCTTTGCTAAGTCTGCACAGAATTCATATAAGCAATTTCAGGACAAGGCAGCTTCTTCCAAATCAATGACTATAGATAAAATGGAGGAAGTTACACAAGGGAGAGTTTGGGCAGGTAAAGATGCAGCTTCAAGGGATTTAGTTAATGCTATTGGTGGACTTTCTCAGGTTGTTGCAATAGCAAAGCTCAAGGCAAATATACCACAAGACACAGAGGTTGGTGACAAAAATCTTATTTCAGTGGCTAGGCATATGCTAGAGATAATAATGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

19.28

Weight (kDa)

4.57

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S49 PF01343 41 - 88 1.6e-13 Peptidase family S49
Peptidase_S49 PF01343 85 - 154 2.2e-09 Peptidase family S49
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AcsI RAATTY 2 cut(s) 217, 286
AgsI TTSAA 1 cut(s) 396
AjiI CACGTC 1 cut(s) 160
AluBI AGCT 4 cut(s) 260, 317, 392, 451
AluI AGCT 4 cut(s) 260, 317, 392, 451
ApeKI GCWGC 5 cut(s) 125, 164, 194, 314, 389
ApoI RAATTY 2 cut(s) 217, 286
AseI ATTAAT 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 497
BbvI GCAGC 5 cut(s) 112, 176, 206, 326, 401
BciVI GTATCC 1 cut(s) 170
BfaI CTAG 2 cut(s) 510, 521
BfmI CTRYAG 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 368
BfuI GTATCC 1 cut(s) 170
BisI GCNGC 5 cut(s) 126, 165, 195, 315, 390
BlsI GCNGC 5 cut(s) 127, 166, 196, 316, 391
BmgBI CACGTC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 3 cut(s) 12, 190, 376
BpuEI CTTGAG 1 cut(s) 437
BsaWI WCCGGW 1 cut(s) 136
Bse1I ACTGG 3 cut(s) 62, 107, 235
Bse3DI GCAATG 3 cut(s) 32, 141, 195
BseMI GCAATG 3 cut(s) 32, 141, 195
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 3 cut(s) 62, 107, 235
BseXI GCAGC 5 cut(s) 112, 176, 206, 326, 401
BsgI GTGCAG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 368
BsrDI GCAATG 3 cut(s) 32, 141, 195
BsrI ACTGG 3 cut(s) 62, 107, 235
BstAPI GCANNNNNTGC 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 78, 273, 429
BstMWI GCNNNNNNNGC 4 cut(s) 194, 200, 209, 278
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 5 cut(s) 112, 176, 206, 326, 401
BsuI GTATCC 1 cut(s) 170
BtrI CACGTC 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 510
BveI ACCTGC 1 cut(s) 368
CviJI RGCY 9 cut(s) 61, 85, 106, 125, 260, 317, 392, 451, 509
CviKI_1 RGCY 9 cut(s) 61, 85, 106, 125, 260, 317, 392, 451, 509
DdeI CTNAG 3 cut(s) 78, 273, 429
EcoRI GAATTC 1 cut(s) 286
FauNDI CATATG 1 cut(s) 516
Fnu4HI GCNGC 5 cut(s) 126, 165, 195, 315, 390
Fsp4HI GCNGC 5 cut(s) 126, 165, 195, 315, 390
FspBI CTAG 2 cut(s) 510, 521
GluI GCNGC 5 cut(s) 126, 165, 195, 315, 390
HapII CCGG 1 cut(s) 137
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 2 cut(s) 7, 157
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 422
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 6 cut(s) 128, 146, 212, 281, 389, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 200, 209, 278
HpyF3I CTNAG 3 cut(s) 78, 273, 429
HpySE526I ACGT 1 cut(s) 159
Lsp1109I GCAGC 5 cut(s) 112, 176, 206, 326, 401
LweI GCATC 3 cut(s) 12, 190, 376
MaeI CTAG 2 cut(s) 510, 521
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 247, 355, 485
MboII GAAGA 3 cut(s) 20, 66, 312
MluCI AATT 5 cut(s) 13, 69, 217, 286, 299
MnlI CCTC 4 cut(s) 167, 247, 343, 472
MseI TTAA 6 cut(s) 131, 149, 221, 227, 408, 538
MspI CCGG 1 cut(s) 137
MwoI GCNNNNNNNGC 4 cut(s) 194, 200, 209, 278
NdeI CATATG 1 cut(s) 516
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 247, 485
PkrI GCNGC 5 cut(s) 127, 166, 196, 316, 391
PshBI ATTAAT 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 235
SaqAI TTAA 6 cut(s) 131, 149, 221, 227, 408, 538
SatI GCNGC 5 cut(s) 126, 165, 195, 315, 390
SetI ASST 9 cut(s) 162, 227, 262, 319, 382, 394, 435, 453, 483
SfaNI GCATC 3 cut(s) 12, 190, 376
SfcI CTRYAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 5 cut(s) 13, 69, 217, 286, 299
SspMI CTAG 2 cut(s) 510, 521
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 39
TasI AATT 5 cut(s) 13, 69, 217, 286, 299
Tru1I TTAA 6 cut(s) 131, 149, 221, 227, 408, 538
Tru9I TTAA 6 cut(s) 131, 149, 221, 227, 408, 538
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 2 cut(s) 247, 485
TseI GCWGC 5 cut(s) 125, 164, 194, 314, 389
Tsp45I GTSAC 2 cut(s) 247, 485
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 510
VspI ATTAAT 1 cut(s) 149
XapI RAATTY 2 cut(s) 217, 286
XspI CTAG 2 cut(s) 510, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.