Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001220

Physical Location & Seq

Genomic Coordinates Reverse (-)

15152273 .. 15158138

Gene Structure 5866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCATTCCTTTTGGGTTACTTCAATGTTGAAGGAAAGACTTGGAGTACAAAAACAGAAAAAGCTTCCTATGGTTGATTACTGGAAATATTCTAAGGTTCGGAAATGGACTCTTGGATTATCAGGCGGTAAAGACAAGATAGCCATAATAAGAGCCTCAGGCAGTATTAGCTGTGTACGAGATTCTTTTAGTCTACCTGGATCATCTCTTGTTGGAGAACAGTTCATTGAAAAGATCCGTACTATAAGAGAATCAAAAAGATACAAAGCTGCTATTATCCGAATTGACTGCCCTGGAGGTGATGCCCTTGCTTCTGATTTGATGTGGAGGGAAATCAAACTTTTGGCTGCATCAAAACCGGTCATTGTGTCAATGTCTGATGTGGCAGCAAGTGGAGGATACTATATGGCTATGGCAGCAGATGCCGTTGTTGCAGAAAATCTAACCTTAACTAGTTCCATTGGAGTTGTCACAGGAAAGTTTAACCTTGGAAAACTGTGCGAGAAGATTGGCTTCAACAAAGAAATCATATCACGGGGAAAAATTTGCAGATGTTCTTGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S49

Protein Analysis

188

Amino Acids

20.62

Weight (kDa)

9.7

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S49	PF01343	115 - 181	2.2e-19	Peptidase family S49

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73990 AT1G73990
fragaria_vesca	FvH4_5g13110 FvH4_5g13112
malus_domestica	MD06G1207100.v1.1 MD14G1217600.v1.1
prunus_persica	Prupe.5G211500_v2.0.a1 Prupe.5G211500_v2.0.a1
pyrus_communis	pycom06g18500 pycom14g18030
rosa_chinensis	RchiOBHm_Chr2g0126491 RchiOBHm_Chr2g0152701 RchiOBHm_Chr6g0264331 RchiOBHm_Chr6g0264341 RchiOBHm_Chr6g0264351 RchiOBHm_Chr7g0184031 RchiOBHm_Chr7g0184041
rosa_laevigata	RLG00000005008
rosa_multiflora	Rmu_sc0000532.1_g000028 Rmu_sc0004712.1_g000014 Rmu_sc0004712.1_g000024 Rmu_sc0007533.1_g000011 Rmu_sc0010483.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431720 Rroxscaffold_3G00219040 Rroxscaffold_3G00219050 Rroxscaffold_3G00269980 Rroxscaffold_5G00361620
rosa_rugosa	Rorug01G0193000 Rorug03G0324200 Rorug06G0461700
rosa_samantha	Rh2AG316100 Rh2AG421900 Rh2BG328900 Rh2CG409100 Rh4CG063900 Rh5CG558100 Rh6BG128500 Rh6CG126800 Rh6DG114100 Rh7AG063000 Rh7AG499000 Rh7AG499100 Rh7BG063200 Rh7BG469900 Rh7BG470100 Rh7CG064200 Rh7DG063300 Rh7DG063600 Rh7DG392100
rosa_wichuraiana	Rw0G022820 Rw6G011500 Rw7G005210 Rw7G005220 Rw7G020530 Rw7G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	2 cut(s)	208, 229
AcsI	RAATTY	1 cut(s)	543
AfaI	GTAC	3 cut(s)	48, 177, 241
AgeI	ACCGGT	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	24, 31, 230, 517
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	2 cut(s)	196, 292
AluBI	AGCT	4 cut(s)	64, 171, 269, 564
AluI	AGCT	4 cut(s)	64, 171, 269, 564
AlwI	GGATC	2 cut(s)	208, 229
ApeKI	GCWGC	5 cut(s)	269, 347, 386, 416, 561
ApoI	RAATTY	1 cut(s)	543
AsiGI	ACCGGT	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	157
BbvI	GCAGC	4 cut(s)	256, 334, 398, 428
BceAI	ACGGC	1 cut(s)	410
BcgI	CGANNNNNNTGC	2 cut(s)	270, 304
BciT130I	CCWGG	2 cut(s)	198, 294
BciVI	GTATCC	1 cut(s)	392
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	1 cut(s)	453
BfuI	GTATCC	1 cut(s)	392
BisI	GCNGC	5 cut(s)	270, 348, 387, 417, 562
BlsI	GCNGC	5 cut(s)	271, 349, 388, 418, 563
Bme1390I	CCNGG	2 cut(s)	198, 294
BmrFI	CCNGG	2 cut(s)	198, 294
BmsI	GCATC	3 cut(s)	292, 359, 412
BpmI	CTGGAG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	292, 487
BsaWI	WCCGGW	1 cut(s)	358
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	86
Bse21I	CCTNAGG	1 cut(s)	157
BseBI	CCWGG	2 cut(s)	198, 294
BseDI	CCNNGG	2 cut(s)	292, 487
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	4 cut(s)	256, 334, 398, 428
BshTI	ACCGGT	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	4
Bsp143I	GATC	2 cut(s)	200, 234
BspACI	CCGC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	170
BspPI	GGATC	2 cut(s)	208, 229
BsrFI	RCCGGY	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	292, 487
BssMI	GATC	2 cut(s)	200, 234
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	2 cut(s)	198, 294
Bst4CI	ACNGT	2 cut(s)	222, 498
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	93, 157
BstKTI	GATC	2 cut(s)	203, 237
BstMBI	GATC	2 cut(s)	200, 234
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 416, 422, 431
BstNI	CCWGG	2 cut(s)	198, 294
BstSCI	CCNGG	2 cut(s)	196, 292
BstV1I	GCAGC	4 cut(s)	256, 334, 398, 428
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
Bsu36I	CCTNAGG	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	47, 176, 240
CspAI	ACCGGT	1 cut(s)	358
CviJI	RGCY	9 cut(s)	64, 143, 155, 171, 269, 347, 410, 513, 564
CviKI_1	RGCY	9 cut(s)	64, 143, 155, 171, 269, 347, 410, 513, 564
CviQI	GTAC	3 cut(s)	47, 176, 240
DdeI	CTNAG	2 cut(s)	93, 157
DpnI	GATC	2 cut(s)	202, 236
DpnII	GATC	2 cut(s)	200, 234
Eco130I	CCWWGG	1 cut(s)	487
Eco81I	CCTNAGG	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	196, 292
EcoT14I	CCWWGG	1 cut(s)	487
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	487
FaiI	YATR	7 cut(s)	71, 146, 245, 405, 407, 413, 530
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	5 cut(s)	270, 348, 387, 417, 562
Fsp4HI	GCNGC	5 cut(s)	270, 348, 387, 417, 562
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	5 cut(s)	270, 348, 387, 417, 562
GsuI	CTGGAG	1 cut(s)	315
HapII	CCGG	1 cut(s)	359
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	109, 182, 251
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	176, 194
Hpy188I	TCNGA	4 cut(s)	102, 281, 316, 379
Hpy8I	GTNNAC	2 cut(s)	176, 194
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	222, 498
HpyCH4V	TGCA	5 cut(s)	4, 350, 434, 549, 561
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 416, 422, 431
HpyF3I	CTNAG	2 cut(s)	93, 157
Kzo9I	GATC	2 cut(s)	200, 234
LpnPI	CCDG	9 cut(s)	67, 108, 144, 183, 210, 279, 306, 372, 459
Lsp1109I	GCAGC	4 cut(s)	256, 334, 398, 428
LweI	GCATC	3 cut(s)	292, 359, 412
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	16, 469
MalI	GATC	2 cut(s)	202, 236
MboI	GATC	2 cut(s)	200, 234
MboII	GAAGA	1 cut(s)	517
MflI	RGATCY	1 cut(s)	234
MluCI	AATT	2 cut(s)	282, 543
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	166, 290, 321, 389
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	449, 483
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	198, 294
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	2 cut(s)	198, 294
MwoI	GCNNNNNNNGC	4 cut(s)	168, 416, 422, 431
NdeII	GATC	2 cut(s)	200, 234
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	182, 251
PinAI	ACCGGT	1 cut(s)	358
PkrI	GCNGC	5 cut(s)	271, 349, 388, 418, 563
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	196, 292
PspGI	CCWGG	2 cut(s)	196, 292
PsuI	RGATCY	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	564
RsaI	GTAC	3 cut(s)	48, 177, 241
RsaNI	GTAC	3 cut(s)	47, 176, 240
SaqAI	TTAA	2 cut(s)	449, 483
SatI	GCNGC	5 cut(s)	270, 348, 387, 417, 562
Sau3AI	GATC	2 cut(s)	200, 234
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	198, 294
SetI	ASST	9 cut(s)	66, 99, 173, 199, 271, 301, 449, 489, 566
SfaNI	GCATC	3 cut(s)	292, 359, 412
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	2 cut(s)	282, 543
SsiI	CCGC	1 cut(s)	126
SspI	AATATT	1 cut(s)	89
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	196, 292
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	2 cut(s)	222, 498
TasI	AATT	2 cut(s)	282, 543
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	182, 251
Tru1I	TTAA	2 cut(s)	449, 483
Tru9I	TTAA	2 cut(s)	449, 483
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	5 cut(s)	269, 347, 386, 416, 561
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	227
XapI	RAATTY	1 cut(s)	543
XmiI	GTMKAC	1 cut(s)	193
XspI	CTAG	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.