Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001220

Physical Location & Seq

Genomic Coordinates Forward (+)

55574580 .. 55576587

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG409100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGTATTAGGCTCAAGAGGATGGTGGTCTCCGATGAGAGCCCTAAGTTGCTTTCCAGATGGCCAAGAAATTATGGCAGTGAAGGGGAGGGTCTTGCAAGTTCCACTAGTGTTCAGGCATCGTTTGTAAGAGTGTTCTTGAGAAAACTGGAGTTGAGCCACAAGTGGAGAGGATTAGTAAATACGAAAGTGCTGGTGAGCAACTTGCCCTACGACATGTCCGAAGAAAATTGTGAGATGCTGACAGCATTGCTCGATAACATATATGGGAACTGGCTGGACATAATTTCTTCTACAAGAGATTGGCTTCGACAAGGAAATCATATCAAGGGGGAATTTGCAGAGGTTCTTGCAGCTGAACAACGACCCTTTAAACTAGAGGAAGCTGAACTCTTTGCTAAGTCTACACAGAATTCGTATAAGCAATTTCGGGACAAGGCAGCTTCTTCCAAATCAATGACTGTAGATAAAATGGAGGAAGTTGCACAAGGGAGAGTTTGGGCAGGTAAAGATGCAGCTTCAAGGGGTTTAGTTAATGCTATTGGTGGACTTTCTCAGGTTGTTGCAATAGCAACGCTCAAGGCAAATATACCACAAGACACAGAGGTTACACTAGTGGAACTTACAAGACCATCCCCTTCACTGCCAAAACTTTTAAGTGGTGTAGGGAGTACTCTGGTGGGAGTTGCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S49

Protein Analysis

231

Amino Acids

25.49

Weight (kDa)

8.94

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S49	PF01343	110 - 196	3.1e-12	Peptidase family S49

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73990 AT1G73990
fragaria_vesca	FvH4_5g13110 FvH4_5g13112
malus_domestica	MD06G1207100.v1.1 MD14G1217600.v1.1
prunus_persica	Prupe.5G211500_v2.0.a1 Prupe.5G211500_v2.0.a1
pyrus_communis	pycom06g18500 pycom14g18030
rosa_chinensis	RchiOBHm_Chr2g0126491 RchiOBHm_Chr2g0152701 RchiOBHm_Chr6g0264331 RchiOBHm_Chr6g0264341 RchiOBHm_Chr6g0264351 RchiOBHm_Chr7g0184031 RchiOBHm_Chr7g0184041
rosa_laevigata	RLG00000005008
rosa_multiflora	Rmu_sc0000532.1_g000028 Rmu_sc0004712.1_g000014 Rmu_sc0004712.1_g000024 Rmu_sc0007533.1_g000011 Rmu_sc0010483.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431720 Rroxscaffold_3G00219040 Rroxscaffold_3G00219050 Rroxscaffold_3G00269980 Rroxscaffold_5G00361620
rosa_rugosa	Rorug01G0193000 Rorug03G0324200 Rorug06G0461700
rosa_samantha	Rh2AG316100 Rh2AG421900 Rh2BG328900 Rh2CG409100 Rh4CG063900 Rh5CG558100 Rh6BG128500 Rh6CG126800 Rh6DG114100 Rh7AG063000 Rh7AG499000 Rh7AG499100 Rh7BG063200 Rh7BG469900 Rh7BG470100 Rh7CG064200 Rh7DG063300 Rh7DG063600 Rh7DG392100
rosa_wichuraiana	Rw0G022820 Rw6G011500 Rw7G005210 Rw7G005220 Rw7G020530 Rw7G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	335, 412
AfaI	GTAC	1 cut(s)	673
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	522
AhlI	ACTAGT	2 cut(s)	107, 613
AluBI	AGCT	4 cut(s)	356, 386, 443, 518
AluI	AGCT	4 cut(s)	356, 386, 443, 518
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	3 cut(s)	353, 440, 515
ApoI	RAATTY	2 cut(s)	335, 412
AsuHPI	GGTGA	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	365, 452, 527
BccI	CCATC	3 cut(s)	16, 54, 640
BcoDI	GTCTC	1 cut(s)	34
BcuI	ACTAGT	2 cut(s)	107, 613
BfaI	CTAG	4 cut(s)	108, 377, 614, 694
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	494
BisI	GCNGC	3 cut(s)	354, 441, 516
BlsI	GCNGC	3 cut(s)	355, 442, 517
BmcAI	AGTACT	1 cut(s)	673
BmsI	GCATC	3 cut(s)	128, 228, 502
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	160, 563
BsaI	GGTCTC	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	153, 278
Bse3DI	GCAATG	1 cut(s)	248
BseGI	GGATG	2 cut(s)	27, 632
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	2 cut(s)	153, 278
BseXI	GCAGC	3 cut(s)	365, 452, 527
BshFI	GGCC	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	153, 278
Bst4CI	ACNGT	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	45, 399, 555
BstF5I	GGATG	2 cut(s)	27, 632
BstMAI	GTCTC	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	365, 452, 527
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	27, 632
BtsI	GCAGTG	2 cut(s)	85, 641
BtsIMutI	CAGTG	2 cut(s)	85, 641
BveI	ACCTGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	1 cut(s)	217
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	3 cut(s)	45, 399, 555
DraI	TTTAAA	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	1 cut(s)	220
FaiI	YATR	9 cut(s)	75, 218, 263, 265, 267, 284, 324, 420, 590
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	3 cut(s)	354, 441, 516
FokI	GGATG	2 cut(s)	34, 619
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	354, 441, 516
FspBI	CTAG	4 cut(s)	108, 377, 614, 694
GluI	GCNGC	3 cut(s)	354, 441, 516
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	220
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	405, 548
Hpy188I	TCNGA	2 cut(s)	34, 223
Hpy188III	TCNNGA	4 cut(s)	16, 57, 139, 431
Hpy8I	GTNNAC	2 cut(s)	405, 548
HpyAV	CCTTC	2 cut(s)	77, 648
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	6 cut(s)	98, 341, 353, 485, 515, 566
HpyF3I	CTNAG	3 cut(s)	45, 399, 555
Hsp92II	CATG	1 cut(s)	220
LpnPI	CCDG	9 cut(s)	70, 101, 134, 179, 259, 263, 489, 542, 662
Lsp1109I	GCAGC	3 cut(s)	365, 452, 527
LweI	GCATC	3 cut(s)	128, 228, 502
MaeI	CTAG	4 cut(s)	108, 377, 614, 694
MaeIII	GTNAC	1 cut(s)	607
MboII	GAAGA	3 cut(s)	236, 282, 438
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	64
MluCI	AATT	6 cut(s)	70, 229, 285, 335, 412, 425
MluNI	TGGCCA	1 cut(s)	64
MnlI	CCTC	7 cut(s)	12, 82, 164, 337, 373, 469, 598
Mox20I	TGGCCA	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	64
MseI	TTAA	3 cut(s)	372, 534, 656
Msp20I	TGGCCA	1 cut(s)	64
MspA1I	CMGCKG	1 cut(s)	356
NlaIII	CATG	1 cut(s)	220
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	355, 442, 517
PscI	ACATGT	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
SaqAI	TTAA	3 cut(s)	372, 534, 656
SatI	GCNGC	3 cut(s)	354, 441, 516
ScaI	AGTACT	1 cut(s)	673
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	8 cut(s)	348, 358, 388, 445, 508, 520, 561, 609
SfaNI	GCATC	3 cut(s)	128, 228, 502
SfcI	CTRYAG	1 cut(s)	462
SmlI	CTYRAG	3 cut(s)	14, 139, 578
SmoI	CTYRAG	3 cut(s)	14, 139, 578
SpeI	ACTAGT	2 cut(s)	107, 613
Sse9I	AATT	6 cut(s)	70, 229, 285, 335, 412, 425
SspMI	CTAG	4 cut(s)	108, 377, 614, 694
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	255, 310
TasI	AATT	6 cut(s)	70, 229, 285, 335, 412, 425
TatI	WGTACW	1 cut(s)	671
Tru1I	TTAA	3 cut(s)	372, 534, 656
Tru9I	TTAA	3 cut(s)	372, 534, 656
TscAI	CASTG	2 cut(s)	85, 648
TseI	GCWGC	3 cut(s)	353, 440, 515
TspRI	CASTG	2 cut(s)	85, 648
XapI	RAATTY	2 cut(s)	335, 412
XceI	RCATGY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	4 cut(s)	108, 377, 614, 694
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.