Rh2AG316100

protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001220
Physical Location & Seq
Reverse (-)
41477948 .. 41480283
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG316100.1

Sequence Viewer

Length: 621 bp
ATGTGGAGGGAAATCAAACTTTTGGCTGCATCAAAACCGGTCATCGCATCAATGTCTGATGTGGTAGCAAGTGGAGGATATTATATGGCAATGGCAGCAGATGCCATTGTTGCAGAAAATTTAACCTTAACTGGTTCCATTGGAATTGTCATAGGTAAGTTTAATATGGGAAAACTATATGAGAAGATTGGCTTCAACAAGGAAATCATATCAAGGGGGAATTTGCAGAGGTTCTTGCAGCTGAAAAATGACCCTTTAAAGGAAGCTGATGAACTCTTTGCTAAGTCTGCACAGAATTCGTATAAGCAATTTCAGGACAAGGTAGCTTCTTCCAGATCAATGACTGTAGATAAAATGGAGGAAGTTGCACAAGGGAGAGTTTGGGCAGGTAAAGATGCAGCTTCAAGGGGTTTAGTTGATGCTATTGGTGGACTTTCTCGGGCTGTTGCGATAGCAAAGCTCAAGGAAAATATACCACAAGACACAGAGGTTACATTAGTGGAACTTGCAAGACCATCCCCTTCATTGCCAGAACTTTTAAGTGGCGTAGGGAGTACTCTGGTGGGAGTTGCTTTCCAGGTCAAGCATTTTCGATGCCATGGCTGGAATTACTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S49

Protein Analysis

206

Amino Acids

22.44

Weight (kDa)

8.91

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S49 PF01343 8 - 156 7.8e-41 Peptidase family S49
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 377
AcsI RAATTY 3 cut(s) 118, 220, 295
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 1 cut(s) 259
AgeI ACCGGT 1 cut(s) 37
AgsI TTSAA 3 cut(s) 196, 405, 617
AjnI CCWGG 1 cut(s) 576
AluBI AGCT 5 cut(s) 241, 266, 326, 401, 460
AluI AGCT 5 cut(s) 241, 266, 326, 401, 460
Ama87I CYCGRG 1 cut(s) 438
ApeKI GCWGC 4 cut(s) 26, 95, 238, 398
ApoI RAATTY 3 cut(s) 118, 220, 295
AsiGI ACCGGT 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 438
BbvI GCAGC 4 cut(s) 13, 107, 250, 410
BccI CCATC 1 cut(s) 523
BcgI CGANNNNNNTGC 2 cut(s) 279, 313
BciT130I CCWGG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 377
BisI GCNGC 4 cut(s) 27, 96, 239, 399
BlsI GCNGC 4 cut(s) 28, 97, 240, 400
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 438
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 578
BmsI GCATC 6 cut(s) 38, 56, 91, 385, 409, 584
BpuEI CTTGAG 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 598
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 2 cut(s) 96, 524
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 1 cut(s) 515
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 2 cut(s) 96, 524
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 4 cut(s) 13, 107, 250, 410
BsgI GTGCAG 1 cut(s) 273
BshTI ACCGGT 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 438
Bsp143I GATC 1 cut(s) 335
Bsp19I CCATGG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 96, 524
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 598
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 1 cut(s) 515
BstKTI GATC 1 cut(s) 338
BstMBI GATC 1 cut(s) 335
BstMWI GCNNNNNNNGC 4 cut(s) 95, 101, 110, 287
BstNI CCWGG 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 576
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 4 cut(s) 13, 107, 250, 410
BtgI CCRYGG 1 cut(s) 598
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 515
BveI ACCTGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 37
Csp6I GTAC 1 cut(s) 555
CspAI ACCGGT 1 cut(s) 37
CviAII CATG 1 cut(s) 599
CviJI RGCY 9 cut(s) 26, 192, 241, 266, 326, 401, 443, 460, 603
CviKI_1 RGCY 9 cut(s) 26, 192, 241, 266, 326, 401, 443, 460, 603
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
DraI TTTAAA 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 598
Eco88I CYCGRG 1 cut(s) 438
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 576
EcoT14I CCWWGG 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 598
FaeI CATG 1 cut(s) 602
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 1 cut(s) 598
Fnu4HI GCNGC 4 cut(s) 27, 96, 239, 399
FokI GGATG 1 cut(s) 502
Fsp4HI GCNGC 4 cut(s) 27, 96, 239, 399
GluI GCNGC 4 cut(s) 27, 96, 239, 399
HapII CCGG 1 cut(s) 38
Hin1II CATG 1 cut(s) 602
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 314, 333
Hpy8I GTNNAC 1 cut(s) 431
HpyAV CCTTC 1 cut(s) 531
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4V TGCA 8 cut(s) 29, 113, 226, 238, 290, 368, 398, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 101, 110, 287
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 1 cut(s) 602
Kzo9I GATC 1 cut(s) 335
Lsp1109I GCAGC 4 cut(s) 13, 107, 250, 410
LweI GCATC 6 cut(s) 38, 56, 91, 385, 409, 584
MaeIII GTNAC 1 cut(s) 490
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 2 cut(s) 196, 321
MluCI AATT 6 cut(s) 118, 144, 220, 295, 308, 607
MnlI CCTC 4 cut(s) 68, 222, 352, 481
MseI TTAA 5 cut(s) 122, 128, 162, 257, 539
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 578
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 4 cut(s) 95, 101, 110, 287
NcoI CCATGG 1 cut(s) 598
NdeII GATC 1 cut(s) 335
NlaIII CATG 1 cut(s) 602
NlaIV GGNNCC 1 cut(s) 136
PinAI ACCGGT 1 cut(s) 37
PkrI GCNGC 4 cut(s) 28, 97, 240, 400
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SaqAI TTAA 5 cut(s) 122, 128, 162, 257, 539
SatI GCNGC 4 cut(s) 27, 96, 239, 399
Sau3AI GATC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 578
SfaNI GCATC 6 cut(s) 38, 56, 91, 385, 409, 584
SfcI CTRYAG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 6 cut(s) 118, 144, 220, 295, 308, 607
StyD4I CCNGG 1 cut(s) 576
StyI CCWWGG 1 cut(s) 598
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 592
TasI AATT 6 cut(s) 118, 144, 220, 295, 308, 607
TatI WGTACW 1 cut(s) 554
Tru1I TTAA 5 cut(s) 122, 128, 162, 257, 539
Tru9I TTAA 5 cut(s) 122, 128, 162, 257, 539
TseI GCWGC 4 cut(s) 26, 95, 238, 398
TspDTI ATGAA 2 cut(s) 285, 513
XapI RAATTY 3 cut(s) 118, 220, 295
ZrmI AGTACT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.