Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000532.1

Orthogroup ID

OG0001220

Physical Location & Seq

Genomic Coordinates Forward (+)

129875 .. 136749

Gene Structure 6875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000532.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgggtaactgggatttgaattttgtggtttcagtattggattcgaacattggagatgtggatttgggattgaaggaaaaaatgtcaaaattggggccaggaaggctcaagagaatggtgttctccgatgagagccttgagttgctttccaggtatggccaagaaattatggcagtgaaggggagggtgttcttaagaaaactggagttgagccacaagtggagaggattagtaaatacgaaagtgctggtaagcaacttgcgctacgaccatgtccgaagaaaattgatgcggagggaaatcaaacttttggctgcatcaaaaccggacatcgcatcaatgtctgacgtggcagcagataccattgttgcagaaaatttaaccttaactggttccattggagttgtcacagataaaatggaggaagttgcacaagggagagtttgggcaggtaaagatgcagcttcaagggatttagttaatgctattggtggactttctcaagttgttgcaatagcaaagctcaaggcaaatataccacaagacacagagacgagcaagacgatcgccctcaaagtttggaacccagaaacatcgtatccttcgatttgtgttgggctgttagccatctgcgatttggttgatgcagcccgtcttcgacctccgtcaattgacttgaggaacccttttgtggagcaagcagtgcagtactgtgtggctgctgctcgagcaacacttgataaagacaagaaggattcgttagagaaattactattctccttgcattctctggcttacacccacttaacagtaatcggctcagttttaatagtgaggtttcttcccttttcctttcccttacaagctggaattagcaatgctgcagtaagtgaagagttgatcaccccacttgttcatatgaattgcttgggaacacaacagattggcatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S49

Protein Analysis

317

Amino Acids

34.76

Weight (kDa)

8.95

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73990 AT1G73990
fragaria_vesca	FvH4_5g13110 FvH4_5g13112
malus_domestica	MD06G1207100.v1.1 MD14G1217600.v1.1
prunus_persica	Prupe.5G211500_v2.0.a1 Prupe.5G211500_v2.0.a1
pyrus_communis	pycom06g18500 pycom14g18030
rosa_chinensis	RchiOBHm_Chr2g0126491 RchiOBHm_Chr2g0152701 RchiOBHm_Chr6g0264331 RchiOBHm_Chr6g0264341 RchiOBHm_Chr6g0264351 RchiOBHm_Chr7g0184031 RchiOBHm_Chr7g0184041
rosa_laevigata	RLG00000005008
rosa_multiflora	Rmu_sc0000532.1_g000028 Rmu_sc0004712.1_g000014 Rmu_sc0004712.1_g000024 Rmu_sc0007533.1_g000011 Rmu_sc0010483.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431720 Rroxscaffold_3G00219040 Rroxscaffold_3G00219050 Rroxscaffold_3G00269980 Rroxscaffold_5G00361620
rosa_rugosa	Rorug01G0193000 Rorug03G0324200 Rorug06G0461700
rosa_samantha	Rh2AG316100 Rh2AG421900 Rh2BG328900 Rh2CG409100 Rh4CG063900 Rh5CG558100 Rh6BG128500 Rh6CG126800 Rh6DG114100 Rh7AG063000 Rh7AG499000 Rh7AG499100 Rh7BG063200 Rh7BG469900 Rh7BG470100 Rh7CG064200 Rh7DG063300 Rh7DG063600 Rh7DG392100
rosa_wichuraiana	Rw0G022820 Rw6G011500 Rw7G005210 Rw7G005220 Rw7G020530 Rw7G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AciI	CCGC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	19, 376
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	1 cut(s)	691
AflII	CTTAAG	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	19, 73, 468
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	97, 149
AluBI	AGCT	3 cut(s)	464, 523, 866
AluI	AGCT	3 cut(s)	464, 523, 866
Alw26I	GTCTC	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	2 cut(s)	95, 157
ApeKI	GCWGC	7 cut(s)	314, 353, 461, 647, 719, 722, 881
ApoI	RAATTY	2 cut(s)	19, 376
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	895
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	726
BaeI	ACNNNNGTAYC	2 cut(s)	351, 384
BalI	TGGCCA	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	647
BbvI	GCAGC	7 cut(s)	301, 365, 473, 659, 706, 709, 868
BccI	CCATC	1 cut(s)	635
BcgI	CGANNNNNNTGC	2 cut(s)	547, 581
BciT130I	CCWGG	2 cut(s)	99, 151
BciVI	GTATCC	1 cut(s)	609
BclI	TGATCA	1 cut(s)	900
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	1 cut(s)	952
BfmI	CTRYAG	1 cut(s)	882
BfrI	CTTAAG	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	609
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	7 cut(s)	315, 354, 462, 648, 720, 723, 882
BlsI	GCNGC	7 cut(s)	316, 355, 463, 649, 721, 724, 883
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	2 cut(s)	99, 151
BmeT110I	CYCGRG	1 cut(s)	726
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	4 cut(s)	96, 394, 584, 683
BmrFI	CCNGG	2 cut(s)	99, 151
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	5 cut(s)	279, 326, 344, 448, 634
BmuI	ACTGGG	1 cut(s)	19
BoxI	GACNNNNGTC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	647
BpmI	CTGGAG	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	5 cut(s)	92, 158, 486, 509, 697
BsaBI	GATNNNNATC	1 cut(s)	947
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse1I	ACTGG	3 cut(s)	14, 207, 394
Bse3DI	GCAATG	1 cut(s)	883
Bse8I	GATNNNNATC	1 cut(s)	947
BseBI	CCWGG	2 cut(s)	99, 151
BseJI	GATNNNNATC	1 cut(s)	947
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	3 cut(s)	14, 207, 394
BseXI	GCAGC	7 cut(s)	301, 365, 473, 659, 706, 709, 868
BsgI	GTGCAG	1 cut(s)	725
Bsh1285I	CGRYCG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	97, 159
BsiEI	CGRYCG	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	1 cut(s)	545
BsmBI	CGTCTC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	2 cut(s)	97, 159
BsoBI	CYCGRG	1 cut(s)	726
Bsp119I	TTCGAA	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	564, 900
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	2 cut(s)	97, 159
BspCNI	CTCAG	1 cut(s)	833
BspLI	GGNNCC	4 cut(s)	96, 394, 584, 683
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	1 cut(s)	440
BspT104I	TTCGAA	1 cut(s)	44
BspTI	CTTAAG	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	883
BsrI	ACTGG	3 cut(s)	14, 207, 394
BssMI	GATC	2 cut(s)	564, 900
Bst2UI	CCWGG	2 cut(s)	99, 151
Bst4CI	ACNGT	2 cut(s)	713, 811
Bst6I	CTCTTC	1 cut(s)	888
BstAFI	CTTAAG	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	1 cut(s)	820
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	2 cut(s)	567, 903
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	2 cut(s)	564, 900
BstMCI	CGRYCG	1 cut(s)	567
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 261, 703, 728
BstNI	CCWGG	2 cut(s)	99, 151
BstPAI	GACNNNNGTC	1 cut(s)	664
BstSCI	CCNGG	2 cut(s)	97, 149
BstSFI	CTRYAG	1 cut(s)	882
BstV1I	GCAGC	7 cut(s)	301, 365, 473, 659, 706, 709, 868
BstV2I	GAAGAC	1 cut(s)	647
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	2 cut(s)	97, 159
BtgZI	GCGATG	1 cut(s)	316
BtrI	CACGTC	1 cut(s)	349
BtsI	GCAGTG	2 cut(s)	180, 708
BtsIMutI	CAGTG	2 cut(s)	180, 708
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	699
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	1 cut(s)	272
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	1 cut(s)	820
DpnI	GATC	2 cut(s)	566, 902
DpnII	GATC	2 cut(s)	564, 900
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco88I	CYCGRG	1 cut(s)	726
EcoRII	CCWGG	2 cut(s)	97, 149
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	1 cut(s)	275
FaiI	YATR	6 cut(s)	156, 170, 273, 536, 918, 920
FatI	CATG	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	918
FbaI	TGATCA	1 cut(s)	900
Fnu4HI	GCNGC	7 cut(s)	315, 354, 462, 648, 720, 723, 882
Fsp4HI	GCNGC	7 cut(s)	315, 354, 462, 648, 720, 723, 882
FspBI	CTAG	1 cut(s)	952
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	7 cut(s)	315, 354, 462, 648, 720, 723, 882
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	97, 159
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	41, 755
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	895
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	3 cut(s)	127, 278, 346
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	494
HpyAV	CCTTC	5 cut(s)	67, 96, 172, 612, 745
HpyCH4III	ACNGT	2 cut(s)	713, 811
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	9 cut(s)	317, 371, 431, 461, 512, 647, 706, 784, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 261, 703, 728
HpyF3I	CTNAG	1 cut(s)	820
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	900
Kzo9I	GATC	2 cut(s)	564, 900
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	7 cut(s)	301, 365, 473, 659, 706, 709, 868
LweI	GCATC	5 cut(s)	279, 326, 344, 448, 634
MaeI	CTAG	1 cut(s)	952
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	5, 406
MalI	GATC	2 cut(s)	566, 902
MboI	GATC	2 cut(s)	564, 900
MboII	GAAGA	4 cut(s)	291, 647, 833, 905
MfeI	CAATTG	1 cut(s)	669
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	9 cut(s)	19, 89, 165, 284, 376, 669, 767, 870, 922
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	8 cut(s)	177, 218, 288, 415, 581, 672, 672, 828
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	6 cut(s)	194, 380, 386, 480, 806, 827
Msp20I	TGGCCA	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	193
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	99, 151
MunI	CAATTG	1 cut(s)	669
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	2 cut(s)	99, 151
MwoI	GCNNNNNNNGC	4 cut(s)	103, 261, 703, 728
NdeI	CATATG	1 cut(s)	918
NdeII	GATC	2 cut(s)	564, 900
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	4 cut(s)	96, 394, 584, 683
NmuCI	GTSAC	1 cut(s)	406
NspV	TTCGAA	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	2 cut(s)	560, 602
PctI	GAATGC	1 cut(s)	784
PfeI	GAWTC	2 cut(s)	41, 755
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	7 cut(s)	316, 355, 463, 649, 721, 724, 883
Ple19I	CGATCG	1 cut(s)	567
PshAI	GACNNNNGTC	1 cut(s)	664
Psp6I	CCWGG	2 cut(s)	97, 149
PspGI	CCWGG	2 cut(s)	97, 149
PspN4I	GGNNCC	4 cut(s)	96, 394, 584, 683
PspPI	GGNCC	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	726
PstI	CTGCAG	1 cut(s)	886
PsyI	GACNNNGTC	1 cut(s)	272
PvuI	CGATCG	1 cut(s)	567
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
SaqAI	TTAA	6 cut(s)	194, 380, 386, 480, 806, 827
SatI	GCNGC	7 cut(s)	315, 354, 462, 648, 720, 723, 882
Sau3AI	GATC	2 cut(s)	564, 900
Sau96I	GGNCC	1 cut(s)	95
ScaI	AGTACT	1 cut(s)	710
ScrFI	CCNGG	2 cut(s)	99, 151
SetI	ASST	9 cut(s)	155, 351, 386, 454, 466, 525, 664, 839, 868
SfaNI	GCATC	5 cut(s)	279, 326, 344, 448, 634
SfcI	CTRYAG	1 cut(s)	882
Sfr274I	CTCGAG	1 cut(s)	726
SfuI	TTCGAA	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	726
SmlI	CTYRAG	7 cut(s)	107, 137, 193, 501, 524, 676, 726
SmoI	CTYRAG	7 cut(s)	107, 137, 193, 501, 524, 676, 726
Sse9I	AATT	9 cut(s)	19, 89, 165, 284, 376, 669, 767, 870, 922
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	952
StyD4I	CCNGG	2 cut(s)	97, 149
TaaI	ACNGT	2 cut(s)	713, 811
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	4 cut(s)	44, 605, 658, 727
TasI	AATT	9 cut(s)	19, 89, 165, 284, 376, 669, 767, 870, 922
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	41, 755
Tru1I	TTAA	6 cut(s)	194, 380, 386, 480, 806, 827
Tru9I	TTAA	6 cut(s)	194, 380, 386, 480, 806, 827
TscAI	CASTG	2 cut(s)	180, 708
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	7 cut(s)	314, 353, 461, 647, 719, 722, 881
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	905, 935
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	180, 708
Tth111I	GACNNNGTC	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	193
XapI	RAATTY	2 cut(s)	19, 376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XhoI	CTCGAG	1 cut(s)	726
XspI	CTAG	1 cut(s)	952
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.