Rh7DG392100

protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001220
Physical Location & Seq
Forward (+)
53662573 .. 53698269
35697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG392100.1

Sequence Viewer

Length: 909 bp
ATGGGTATTAGGCTCAAGAGAATGGTGGTCTCCGATGGGAGCCTTGAGTTGCTTTCCAGGATGTGGAGGGAAATCAAACTTTTGGCTGCATCAAAACCGGACATCGCATCAATGTCTGACATGGCAGCAAGTGGAGAATACTATATGGCAATGGCAGCAGATGCCATTGTTGCAGAAAATTTAACCATAACTGGTTCCATTGGAGTTGTCATAGATAAAATGGAGGAAGTTGCACAAGGGAGAGTTTGGGCAGGTAAAGATGCAGCTTCAAGGGATTTAGTTAATGCTATTGGTGGACTTTCTCAGGTTGTTGTAATAGCAAAGCTCAAGGCAAATATACCACAAGACACAGAGGTTGGTTCAGCAGATCATCACATTCACTATTATGATTTAAGAAATGTGAGTCAACCACTGCATGTGTTTACTGGGCACAGGAAAGCAGTTTCCTATGTGAAATTCTTGTCAAACTATGAGCTTGCGTCTGCATCTACTGATAGCACGTTGCGGTTATGGAATGTGAAAGATAATATTCCAATGACTGACACACAAGATATAGAAAAAGGAACTTACAATGTTATTCTTAGGTTTGCCCCAATAGAGTCCATGGAGAATAACCGGCAAGAGATTGCAAGCTACAGAACAAAAATTGCCAGTGCATGCTTCCCCATCCACTCCAACACAATAGTTGGATGCCGCCAGACAGCCATAATTCCGTTGGAATTTAGACAGGACAAGGCAGACCAGTTCAACCTCCTAGTCCTACGCGAAGAAAACCAAAGTTTTTTAGTACACAAGCAGTCACCAGCAACAGCAGAGTTTCCCCTGCAGCTCCACAAACTCGGCTCAGCTTTCCCTCCTGAGAATCTGGTAATTAATGGCTTCACATCAAGTTGTGCATGTATCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S49

Protein Analysis

302

Amino Acids

33.36

Weight (kDa)

6.25

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S49 PF01343 28 - 74 8.1e-13 Peptidase family S49
Beta-prop_WDR3_1st PF25173 98 - 176 2.8e-09 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 119 - 187 1.6e-07 WDHD1 first WD40 domain
WD40_Prp19 PF24814 119 - 176 1e-06 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 120 - 176 7e-07 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 120 - 192 1.3e-06 THOC3 beta-propeller domain
WD40 PF00400 136 - 172 5.4e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 63
AccII CGCG 1 cut(s) 765
AciI CCGC 2 cut(s) 505, 694
AcsI RAATTY 3 cut(s) 178, 455, 719
AfaI GTAC 1 cut(s) 789
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 2 cut(s) 270, 748
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 6 cut(s) 266, 325, 475, 633, 829, 848
AluI AGCT 6 cut(s) 266, 325, 475, 633, 829, 848
Alw26I GTCTC 1 cut(s) 34
ApeKI GCWGC 5 cut(s) 86, 125, 155, 263, 826
ApoI RAATTY 3 cut(s) 178, 455, 719
AseI ATTAAT 1 cut(s) 873
AsuHPI GGTGA 1 cut(s) 792
BaeGI GKGCMC 1 cut(s) 432
BbvI GCAGC 5 cut(s) 73, 137, 167, 275, 838
BccI CCATC 2 cut(s) 29, 674
BciT130I CCWGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 755
BfmI CTRYAG 2 cut(s) 634, 824
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 6 cut(s) 87, 126, 156, 264, 694, 827
BlpI GCTNAGC 1 cut(s) 844
BlsI GCNGC 6 cut(s) 88, 127, 157, 265, 695, 828
Bme1390I CCNGG 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 41, 196
BmrFI CCNGG 1 cut(s) 58
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 6 cut(s) 98, 116, 151, 250, 494, 680
BmuI ACTGGG 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 844
BpuEI CTTGAG 2 cut(s) 65, 311
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 615
Bse1I ACTGG 4 cut(s) 196, 430, 651, 742
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 3 cut(s) 66, 666, 695
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 3 cut(s) 317, 849, 858
BseNI ACTGG 4 cut(s) 196, 430, 651, 742
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 5 cut(s) 73, 137, 167, 275, 838
Bsh1236I CGCG 1 cut(s) 765
BsiSI CCGG 2 cut(s) 98, 616
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 1 cut(s) 367
Bsp1720I GCTNAGC 1 cut(s) 844
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 2 cut(s) 505, 694
BspCNI CTCAG 3 cut(s) 316, 850, 857
BspFNI CGCG 1 cut(s) 765
BspLI GGNNCC 2 cut(s) 41, 196
BspMAI CTGCAG 1 cut(s) 828
BspMI ACCTGC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 615
BsrI ACTGG 4 cut(s) 196, 430, 651, 742
BssAI RCCGGY 1 cut(s) 615
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 3 cut(s) 477, 631, 658
BstDEI CTNAG 4 cut(s) 303, 581, 844, 858
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 66, 666, 695
BstFNI CGCG 1 cut(s) 765
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 3 cut(s) 155, 161, 170
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 3 cut(s) 419, 660, 900
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 2 cut(s) 634, 824
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 1 cut(s) 765
BstV1I GCAGC 5 cut(s) 73, 137, 167, 275, 838
BtgI CCRYGG 1 cut(s) 603
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 3 cut(s) 66, 666, 695
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 2 cut(s) 410, 658
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 3 cut(s) 477, 631, 658
Cfr10I RCCGGY 1 cut(s) 615
CseI GACGC 1 cut(s) 468
Csp6I GTAC 1 cut(s) 788
CviAII CATG 5 cut(s) 121, 416, 604, 657, 897
CviQI GTAC 1 cut(s) 788
DdeI CTNAG 4 cut(s) 303, 581, 844, 858
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 5 cut(s) 124, 419, 607, 660, 900
FatI CATG 5 cut(s) 120, 415, 603, 656, 896
Fnu4HI GCNGC 6 cut(s) 87, 126, 156, 264, 694, 827
FokI GGATG 3 cut(s) 73, 653, 702
Fsp4HI GCNGC 6 cut(s) 87, 126, 156, 264, 694, 827
FspBI CTAG 1 cut(s) 755
GluI GCNGC 6 cut(s) 87, 126, 156, 264, 694, 827
HapII CCGG 2 cut(s) 98, 616
HgaI GACGC 1 cut(s) 468
Hin1II CATG 5 cut(s) 124, 419, 607, 660, 900
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HinfI GANTC 3 cut(s) 403, 599, 862
HpaII CCGG 2 cut(s) 98, 616
HphI GGTGA 1 cut(s) 792
Hpy166II GTNNAC 4 cut(s) 296, 407, 423, 790
Hpy188I TCNGA 2 cut(s) 34, 118
Hpy188III TCNNGA 2 cut(s) 16, 857
Hpy8I GTNNAC 4 cut(s) 296, 407, 423, 790
HpyCH4IV ACGT 1 cut(s) 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 161, 170
HpyF3I CTNAG 4 cut(s) 303, 581, 844, 858
HpySE526I ACGT 1 cut(s) 500
Hsp92II CATG 5 cut(s) 124, 419, 607, 660, 900
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 2 cut(s) 39, 834
Lsp1109I GCAGC 5 cut(s) 73, 137, 167, 275, 838
LweI GCATC 6 cut(s) 98, 116, 151, 250, 494, 680
MaeI CTAG 1 cut(s) 755
MaeII ACGT 1 cut(s) 500
MaeIII GTNAC 1 cut(s) 798
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 1 cut(s) 779
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 6 cut(s) 178, 455, 645, 708, 719, 870
MlyI GAGTC 2 cut(s) 412, 608
MmeI TCCRAC 3 cut(s) 667, 696, 699
MnlI CCTC 5 cut(s) 60, 217, 346, 761, 864
MseI TTAA 5 cut(s) 182, 282, 392, 873, 907
MslI CAYNNNNRTG 1 cut(s) 384
MspI CCGG 2 cut(s) 98, 616
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 1 cut(s) 765
MwoI GCNNNNNNNGC 3 cut(s) 155, 161, 170
NcoI CCATGG 1 cut(s) 603
NdeII GATC 1 cut(s) 367
NlaIII CATG 5 cut(s) 124, 419, 607, 660, 900
NlaIV GGNNCC 2 cut(s) 41, 196
NmeAIII GCCGAG 1 cut(s) 819
NmuCI GTSAC 1 cut(s) 798
NspI RCATGY 3 cut(s) 419, 660, 900
PaeI GCATGC 1 cut(s) 660
PfeI GAWTC 1 cut(s) 862
PflMI CCANNNNNTGG 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 56
PkrI GCNGC 6 cut(s) 88, 127, 157, 265, 695, 828
PleI GAGTC 2 cut(s) 411, 607
PpsI GAGTC 2 cut(s) 411, 607
PshBI ATTAAT 1 cut(s) 873
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 41, 196
PstI CTGCAG 1 cut(s) 828
RsaI GTAC 1 cut(s) 789
RsaNI GTAC 1 cut(s) 788
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 5 cut(s) 182, 282, 392, 873, 907
SatI GCNGC 6 cut(s) 87, 126, 156, 264, 694, 827
Sau3AI GATC 1 cut(s) 367
SchI GAGTC 2 cut(s) 412, 608
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 6 cut(s) 98, 116, 151, 250, 494, 680
SfcI CTRYAG 2 cut(s) 634, 824
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 3 cut(s) 14, 44, 326
SmoI CTYRAG 3 cut(s) 14, 44, 326
SphI GCATGC 1 cut(s) 660
Sse9I AATT 6 cut(s) 178, 455, 645, 708, 719, 870
SsiI CCGC 2 cut(s) 505, 694
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 755
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 603
TaiI ACGT 1 cut(s) 503
TasI AATT 6 cut(s) 178, 455, 645, 708, 719, 870
TatI WGTACW 1 cut(s) 787
TauI GCSGC 1 cut(s) 696
TfiI GAWTC 1 cut(s) 862
Tru1I TTAA 5 cut(s) 182, 282, 392, 873, 907
Tru9I TTAA 5 cut(s) 182, 282, 392, 873, 907
TscAI CASTG 2 cut(s) 417, 658
TseFI GTSAC 1 cut(s) 798
TseI GCWGC 5 cut(s) 86, 125, 155, 263, 826
Tsp45I GTSAC 1 cut(s) 798
TspGWI ACGGA 1 cut(s) 702
TspRI CASTG 2 cut(s) 417, 658
Van91I CCANNNNNTGG 1 cut(s) 63
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 3 cut(s) 178, 455, 719
XceI RCATGY 3 cut(s) 419, 660, 900
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XspI CTAG 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.