Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010483.1

Orthogroup ID

OG0001220

Physical Location & Seq

Genomic Coordinates Forward (+)

4766 .. 6959

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010483.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggtgaaagccaacaaggaaagaccagagatgggtctggatttgatcgactcacaaaacggcacctggactatccgagcggcgagtttcagtttcagtttcaggatgcgagcatctggaagtgcttcgtcgttaagcttcgggtgctctttgcttatccagaaattaggtgttcttgagaaaattggagtagagccacaagtggaaaggattggtaaatataaaagagctgttgaccaacttgtgcgcccgaccatgtccgaagaaaatcgagagatgctgacagcattgctcgataacatatatgggaactggctggacataatttcttctacaagaggtgctttgagatttggtatttggctaatcttgtggaaatattctaaggttcggaaatggactcttggattatcaggcagtaaagacaagatagccataataagagcctcaggcagtattagttgtgtacgagattcttttagtccacctggatcgtctattgttggagaacagttcattgaaaagatccgtactataagagaatcaaaaagatacaaagctgctattatccgaattgactgccctggaggtgatgcccttgcttctgatttgatgtggagggaaatcaaacttttggctgcatcaaaaccggtcattgcgtcaatgtctgatgtggcagcaagtggaggatactatatggctatggcagcagatgccgttgttgcagaaaatctaaccttaactagttccattggagttgtcacaggtgaatatggatatatgttatataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S49

Protein Analysis

264

Amino Acids

29.02

Weight (kDa)

9.38

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73990 AT1G73990
fragaria_vesca	FvH4_5g13110 FvH4_5g13112
malus_domestica	MD06G1207100.v1.1 MD14G1217600.v1.1
prunus_persica	Prupe.5G211500_v2.0.a1 Prupe.5G211500_v2.0.a1
pyrus_communis	pycom06g18500 pycom14g18030
rosa_chinensis	RchiOBHm_Chr2g0126491 RchiOBHm_Chr2g0152701 RchiOBHm_Chr6g0264331 RchiOBHm_Chr6g0264341 RchiOBHm_Chr6g0264351 RchiOBHm_Chr7g0184031 RchiOBHm_Chr7g0184041
rosa_laevigata	RLG00000005008
rosa_multiflora	Rmu_sc0000532.1_g000028 Rmu_sc0004712.1_g000014 Rmu_sc0004712.1_g000024 Rmu_sc0007533.1_g000011 Rmu_sc0010483.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431720 Rroxscaffold_3G00219040 Rroxscaffold_3G00219050 Rroxscaffold_3G00269980 Rroxscaffold_5G00361620
rosa_rugosa	Rorug01G0193000 Rorug03G0324200 Rorug06G0461700
rosa_samantha	Rh2AG316100 Rh2AG421900 Rh2BG328900 Rh2CG409100 Rh4CG063900 Rh5CG558100 Rh6BG128500 Rh6CG126800 Rh6DG114100 Rh7AG063000 Rh7AG499000 Rh7AG499100 Rh7BG063200 Rh7BG469900 Rh7BG470100 Rh7CG064200 Rh7DG063300 Rh7DG063600 Rh7DG392100
rosa_wichuraiana	Rw0G022820 Rw6G011500 Rw7G005210 Rw7G005220 Rw7G020530 Rw7G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	2 cut(s)	499, 520
AfaI	GTAC	2 cut(s)	468, 532
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgeI	ACCGGT	1 cut(s)	649
AgsI	TTSAA	1 cut(s)	521
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	3 cut(s)	65, 487, 583
AluBI	AGCT	3 cut(s)	138, 230, 560
AluI	AGCT	3 cut(s)	138, 230, 560
Alw21I	GWGCWC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	499, 520
ApeKI	GCWGC	4 cut(s)	560, 638, 677, 707
AsiGI	ACCGGT	1 cut(s)	649
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	249
AsuHPI	GGTGA	3 cut(s)	16, 602, 779
AxyI	CCTNAGG	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	4 cut(s)	547, 625, 689, 719
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	2 cut(s)	76, 701
BcgI	CGANNNNNNTGC	2 cut(s)	561, 595
BciT130I	CCWGG	3 cut(s)	67, 489, 585
BciVI	GTATCC	1 cut(s)	683
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	1 cut(s)	744
BfuI	GTATCC	1 cut(s)	683
BisI	GCNGC	5 cut(s)	81, 561, 639, 678, 708
BlsI	GCNGC	5 cut(s)	82, 562, 640, 679, 709
Bme1390I	CCNGG	3 cut(s)	67, 489, 585
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	3 cut(s)	67, 489, 585
BmsI	GCATC	6 cut(s)	96, 122, 267, 583, 650, 703
BpmI	CTGGAG	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	583
BsaWI	WCCGGW	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	317
Bse21I	CCTNAGG	1 cut(s)	448
Bse3DI	GCAATG	2 cut(s)	287, 654
BseBI	CCWGG	3 cut(s)	67, 489, 585
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	2 cut(s)	287, 654
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	547, 625, 689, 719
BshNI	GGYRCC	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	650
BslI	CCNNNNNNNGG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	45, 491, 525
BspACI	CCGC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	461
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	499, 520
BspT107I	GGYRCC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	287, 654
BsrFI	RCCGGY	1 cut(s)	649
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	3 cut(s)	45, 491, 525
Bst2UI	CCWGG	3 cut(s)	67, 489, 585
Bst4CI	ACNGT	1 cut(s)	513
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	384, 448
BstF5I	GGATG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	3 cut(s)	48, 494, 528
BstMBI	GATC	3 cut(s)	45, 491, 525
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 707, 713, 722
BstNI	CCWGG	3 cut(s)	67, 489, 585
BstSCI	CCNGG	3 cut(s)	65, 487, 583
BstV1I	GCAGC	4 cut(s)	547, 625, 689, 719
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
Bsu36I	CCTNAGG	1 cut(s)	448
BsuI	GTATCC	1 cut(s)	683
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	649
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	2 cut(s)	467, 531
CspAI	ACCGGT	1 cut(s)	649
CviAII	CATG	1 cut(s)	256
CviQI	GTAC	2 cut(s)	467, 531
DdeI	CTNAG	2 cut(s)	384, 448
DpnI	GATC	3 cut(s)	47, 493, 527
DpnII	GATC	3 cut(s)	45, 491, 525
Eco81I	CCTNAGG	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	65, 487, 583
FaeI	CATG	1 cut(s)	259
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	5 cut(s)	81, 561, 639, 678, 708
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	5 cut(s)	81, 561, 639, 678, 708
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	5 cut(s)	81, 561, 639, 678, 708
GsuI	CTGGAG	1 cut(s)	606
HapII	CCGG	1 cut(s)	650
HgaI	GACGC	1 cut(s)	648
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	4 cut(s)	50, 400, 473, 542
HpaII	CCGG	1 cut(s)	650
HphI	GGTGA	3 cut(s)	16, 602, 779
Hpy166II	GTNNAC	3 cut(s)	235, 467, 485
Hpy188I	TCNGA	6 cut(s)	77, 262, 393, 572, 607, 670
Hpy188III	TCNNGA	6 cut(s)	38, 103, 117, 160, 176, 272
Hpy8I	GTNNAC	3 cut(s)	235, 467, 485
Hpy99I	CGWCG	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4V	TGCA	2 cut(s)	641, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 707, 713, 722
HpyF3I	CTNAG	2 cut(s)	384, 448
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	45, 491, 525
Lsp1109I	GCAGC	4 cut(s)	547, 625, 689, 719
LweI	GCATC	6 cut(s)	96, 122, 267, 583, 650, 703
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	3 cut(s)	47, 493, 527
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	3 cut(s)	45, 491, 525
MboII	GAAGA	2 cut(s)	275, 321
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	5 cut(s)	164, 183, 324, 573, 790
MlyI	GAGTC	2 cut(s)	44, 394
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	5 cut(s)	332, 457, 581, 612, 680
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	2 cut(s)	134, 740
MspI	CCGG	1 cut(s)	650
MspR9I	CCNGG	3 cut(s)	67, 489, 585
MvaI	CCWGG	3 cut(s)	67, 489, 585
MwoI	GCNNNNNNNGC	4 cut(s)	144, 707, 713, 722
NdeII	GATC	3 cut(s)	45, 491, 525
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	473, 542
PflFI	GACNNNGTC	1 cut(s)	256
PinAI	ACCGGT	1 cut(s)	649
PkrI	GCNGC	5 cut(s)	82, 562, 640, 679, 709
PleI	GAGTC	2 cut(s)	44, 394
PpsI	GAGTC	2 cut(s)	44, 394
Psp6I	CCWGG	3 cut(s)	65, 487, 583
PspGI	CCWGG	3 cut(s)	65, 487, 583
PspN4I	GGNNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	525
PsyI	GACNNNGTC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	468, 532
RsaNI	GTAC	2 cut(s)	467, 531
SaqAI	TTAA	2 cut(s)	134, 740
SatI	GCNGC	5 cut(s)	81, 561, 639, 678, 708
Sau3AI	GATC	3 cut(s)	45, 491, 525
SchI	GAGTC	2 cut(s)	44, 394
ScrFI	CCNGG	3 cut(s)	67, 489, 585
SduI	GDGCHC	1 cut(s)	149
SfaNI	GCATC	6 cut(s)	96, 122, 267, 583, 650, 703
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	5 cut(s)	164, 183, 324, 573, 790
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	3 cut(s)	65, 487, 583
TaaI	ACNGT	1 cut(s)	513
TaqI	TCGA	3 cut(s)	48, 271, 294
TasI	AATT	5 cut(s)	164, 183, 324, 573, 790
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	473, 542
Tru1I	TTAA	2 cut(s)	134, 740
Tru9I	TTAA	2 cut(s)	134, 740
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	4 cut(s)	560, 638, 677, 707
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	1 cut(s)	505
TspGWI	ACGGA	1 cut(s)	518
Tth111I	GACNNNGTC	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.