Rh7BG470100

protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001220
Physical Location & Seq
Reverse (-)
55538855 .. 55543779
4925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG470100.1

Sequence Viewer

Length: 534 bp
ATGCGGAGAATGCCAATGCTACGACGGACAAGGACTATCCGAGCGGCGAGTCTCTGGAAGAGCTTCGTCGTCAAGAAGGGAAGCGTCTTCACCGTGACATTGCGTGGCCAGATAACCGATCAGTTAAAGAGTCGAATTGCTGGTGTTGGAAGAAATTCGGAGGCATATTTGGACTTCCAGAAATCAGTTGTTCTTGAGAAAATTGGAGTTGAGCCACAAGTGGAAAGGATTGGTAAATATAAAAGTGCTGGTGACCAACACATATGGGAACTGGCTGGACATAATTTCCCAGTCCGATCAGGATTCCCAGTCCGATTGCTCGATAACACATATGGGAACTGGCTGGACATAATTTCTTCTACAAGAGGAAAAAAGAGAGAAGATATTGAGAAGTTTGTTAATGAAGGGGTGTACCAAGTAGAAAAGCTGAAAGAAGAGGGCTGGATCACAAACATACAGTATGATGATGAGGTACAAGAAAGCAAGATGAGAGTGCTTCTTCATTTATTTGCTGGAAATATTACAAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S49

Protein Analysis

177

Amino Acids

20.41

Weight (kDa)

9.76

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S49 PF01343 64 - 163 1.9e-07 Peptidase family S49
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 44
AciI CCGC 2 cut(s) 4, 44
AclWI GGATC 1 cut(s) 452
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 2 cut(s) 413, 474
AluBI AGCT 2 cut(s) 63, 427
AluI AGCT 2 cut(s) 63, 427
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 452
AoxI GGCC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 2 cut(s) 62, 154
AsuHPI GGTGA 2 cut(s) 82, 263
BalI TGGCCA 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 56
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmrI ACTGGG 2 cut(s) 284, 302
BmuI ACTGGG 2 cut(s) 284, 302
BpiI GAAGAC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 215
Bse1I ACTGG 4 cut(s) 276, 290, 308, 344
Bse3DI GCAATG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 98
BseNI ACTGG 4 cut(s) 276, 290, 308, 344
BshFI GGCC 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 3 cut(s) 118, 296, 444
BspACI CCGC 2 cut(s) 4, 44
BspANI GGCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 452
BspQI GCTCTTC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 4 cut(s) 276, 290, 308, 344
BssMI GATC 3 cut(s) 118, 296, 444
Bst4CI ACNGT 2 cut(s) 94, 459
Bst6I CTCTTC 2 cut(s) 53, 429
BstEII GGTNACC 1 cut(s) 251
BstKTI GATC 3 cut(s) 121, 299, 447
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 3 cut(s) 118, 296, 444
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstPI GGTNACC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 108
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 412, 473
CviJI RGCY 7 cut(s) 63, 108, 214, 275, 343, 427, 441
CviKI_1 RGCY 7 cut(s) 63, 108, 214, 275, 343, 427, 441
CviQI GTAC 2 cut(s) 412, 473
DpnI GATC 3 cut(s) 120, 298, 446
DpnII GATC 3 cut(s) 118, 296, 444
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 53, 429
EarI CTCTTC 2 cut(s) 53, 429
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
FauNDI CATATG 2 cut(s) 263, 331
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 1 cut(s) 73
HinfI GANTC 3 cut(s) 49, 130, 303
HphI GGTGA 2 cut(s) 82, 263
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 4 cut(s) 41, 160, 296, 314
Hpy188III TCNNGA 5 cut(s) 55, 73, 178, 194, 300
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 2 cut(s) 27, 71
HpyAV CCTTC 2 cut(s) 70, 398
HpyCH4III ACNGT 2 cut(s) 94, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 118, 296, 444
LguI GCTCTTC 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 94, 251
MalI GATC 3 cut(s) 120, 298, 446
MbiI CCGCTC 1 cut(s) 44
MboI GATC 3 cut(s) 118, 296, 444
MboII GAAGA 7 cut(s) 70, 79, 162, 348, 392, 446, 491
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 5 cut(s) 135, 154, 201, 283, 351
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 2 cut(s) 58, 139
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 4 cut(s) 154, 359, 430, 463
Mox20I TGGCCA 1 cut(s) 108
MroXI GAANNNNTTC 2 cut(s) 62, 154
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 125, 399
Msp20I TGGCCA 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 2 cut(s) 263, 331
NdeII GATC 3 cut(s) 118, 296, 444
NmuCI GTSAC 2 cut(s) 94, 251
PciSI GCTCTTC 1 cut(s) 53
PctI GAATGC 1 cut(s) 15
PdmI GAANNNNTTC 2 cut(s) 62, 154
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 2 cut(s) 57, 138
PpsI GAGTC 2 cut(s) 57, 138
PspEI GGTNACC 1 cut(s) 251
RsaI GTAC 2 cut(s) 413, 474
RsaNI GTAC 2 cut(s) 412, 473
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 2 cut(s) 125, 399
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 118, 296, 444
SchI GAGTC 2 cut(s) 58, 139
SetI ASST 3 cut(s) 65, 429, 474
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 5 cut(s) 135, 154, 201, 283, 351
SsiI CCGC 2 cut(s) 4, 44
SspI AATATT 1 cut(s) 520
TaaI ACNGT 2 cut(s) 94, 459
TaqI TCGA 2 cut(s) 133, 321
TasI AATT 5 cut(s) 135, 154, 201, 283, 351
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 125, 399
Tru9I TTAA 2 cut(s) 125, 399
TseFI GTSAC 2 cut(s) 94, 251
Tsp45I GTSAC 2 cut(s) 94, 251
TspDTI ATGAA 2 cut(s) 417, 491
TspGWI ACGGA 1 cut(s) 40
XapI RAATTY 1 cut(s) 154
XmnI GAANNNNTTC 2 cut(s) 62, 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.