protease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 670 |
| AccBSI | CCGCTC | 1 cut(s) | 144 |
| AccI | GTMKAC | 1 cut(s) | 999 |
| AccII | CGCG | 2 cut(s) | 189, 411 |
| AciI | CCGC | 7 cut(s) | 52, 69, 127, 142, 836, 1305, 1583 |
| AclI | AACGTT | 1 cut(s) | 789 |
| AclWI | GGATC | 3 cut(s) | 530, 1031, 1602 |
| AcsI | RAATTY | 7 cut(s) | 504, 543, 603, 641, 970, 1004, 1893 |
| AcuI | CTGAAG | 2 cut(s) | 888, 1597 |
| AfaI | GTAC | 3 cut(s) | 660, 1083, 1212 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 402, 403, 668, 1238, 1996 |
| AgsI | TTSAA | 9 cut(s) | 241, 344, 577, 628, 785, 1066, 1552, 1985, 2012 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 202 |
| AjnI | CCWGG | 3 cut(s) | 450, 1231, 1327 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1505, 1537 |
| AleI | CACNNNNGTG | 1 cut(s) | 54 |
| Alw21I | GWGCWC | 1 cut(s) | 356 |
| Alw26I | GTCTC | 3 cut(s) | 128, 752, 1668 |
| AlwI | GGATC | 3 cut(s) | 530, 1031, 1602 |
| Ama87I | CYCGRG | 1 cut(s) | 1797 |
| AoxI | GGCC | 6 cut(s) | 263, 448, 651, 759, 1302, 1800 |
| ApoI | RAATTY | 7 cut(s) | 504, 543, 603, 641, 970, 1004, 1893 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1949, 1981 |
| AseI | ATTAAT | 1 cut(s) | 978 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 365, 603, 1095 |
| AspLEI | GCGC | 2 cut(s) | 191, 411 |
| AspS9I | GGNCC | 2 cut(s) | 263, 1800 |
| AsuC2I | CCSGG | 1 cut(s) | 1990 |
| AsuHPI | GGTGA | 5 cut(s) | 23, 532, 742, 1346, 1982 |
| AsuII | TTCGAA | 1 cut(s) | 607 |
| AvaI | CYCGRG | 1 cut(s) | 1797 |
| AxyI | CCTNAGG | 2 cut(s) | 267, 1192 |
| BanII | GRGCYC | 2 cut(s) | 356, 1220 |
| BauI | CACGAG | 1 cut(s) | 1856 |
| BbsI | GAAGAC | 2 cut(s) | 966, 1220 |
| Bbv12I | GWGCWC | 1 cut(s) | 356 |
| BccI | CCATC | 5 cut(s) | 42, 245, 1967, 1987, 2051 |
| BceAI | ACGGC | 3 cut(s) | 39, 56, 1787 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 830, 864 |
| BciT130I | CCWGG | 3 cut(s) | 452, 1233, 1329 |
| BciVI | GTATCC | 1 cut(s) | 1427 |
| BclI | TGATCA | 1 cut(s) | 460 |
| BcnI | CCSGG | 1 cut(s) | 1990 |
| BcoDI | GTCTC | 3 cut(s) | 128, 752, 1668 |
| BfmI | CTRYAG | 2 cut(s) | 1704, 1952 |
| BfuAI | ACCTGC | 1 cut(s) | 670 |
| BfuI | GTATCC | 1 cut(s) | 1427 |
| Bme1390I | CCNGG | 4 cut(s) | 452, 1233, 1329, 1990 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 202 |
| BmeT110I | CYCGRG | 1 cut(s) | 1797 |
| BmgT120I | GGNCC | 2 cut(s) | 263, 1800 |
| BmiI | GGNNCC | 2 cut(s) | 1219, 1492 |
| BmrFI | CCNGG | 4 cut(s) | 452, 1233, 1329, 1990 |
| BmsI | GCATC | 6 cut(s) | 873, 1327, 1394, 1412, 1744, 1768 |
| BpiI | GAAGAC | 2 cut(s) | 966, 1220 |
| BpmI | CTGGAG | 3 cut(s) | 466, 1350, 2039 |
| Bpu14I | TTCGAA | 1 cut(s) | 607 |
| BpuEI | CTTGAG | 1 cut(s) | 1805 |
| BpuMI | CCSGG | 1 cut(s) | 1990 |
| Bsa29I | ATCGAT | 1 cut(s) | 249 |
| BsaI | GGTCTC | 2 cut(s) | 128, 752 |
| BsaJI | CCNNGG | 2 cut(s) | 401, 1327 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 402, 403, 668, 1238, 1996 |
| Bse1I | ACTGG | 3 cut(s) | 331, 483, 1492 |
| Bse21I | CCTNAGG | 2 cut(s) | 267, 1192 |
| Bse3DI | GCAATG | 3 cut(s) | 390, 1398, 1452 |
| BseBI | CCWGG | 3 cut(s) | 452, 1233, 1329 |
| BseCI | ATCGAT | 1 cut(s) | 249 |
| BseDI | CCNNGG | 2 cut(s) | 401, 1327 |
| BseGI | GGATG | 4 cut(s) | 931, 1311, 1759, 1998 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 402, 403, 668, 1238, 1996 |
| BseMI | GCAATG | 3 cut(s) | 390, 1398, 1452 |
| BseMII | CTCAG | 3 cut(s) | 281, 1206, 2045 |
| BseNI | ACTGG | 3 cut(s) | 331, 483, 1492 |
| BseRI | GAGGAG | 7 cut(s) | 72, 89, 147, 150, 190, 1733, 1992 |
| BsgI | GTGCAG | 2 cut(s) | 876, 1632 |
| Bsh1236I | CGCG | 2 cut(s) | 189, 411 |
| BshFI | GGCC | 6 cut(s) | 265, 450, 653, 761, 1304, 1802 |
| BshVI | ATCGAT | 1 cut(s) | 249 |
| BsiHKAI | GWGCWC | 1 cut(s) | 356 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1797 |
| BsiSI | CCGG | 1 cut(s) | 1990 |
| BslFI | GGGAC | 1 cut(s) | 1861 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 402, 403, 668, 1238, 1996 |
| BsmAI | GTCTC | 3 cut(s) | 128, 752, 1668 |
| BsmFI | GGGAC | 1 cut(s) | 1861 |
| BsmI | GAATGC | 1 cut(s) | 1660 |
| BsnI | GGCC | 6 cut(s) | 265, 450, 653, 761, 1304, 1802 |
| Bso31I | GGTCTC | 2 cut(s) | 128, 752 |
| BsoBI | CYCGRG | 1 cut(s) | 1797 |
| Bsp119I | TTCGAA | 1 cut(s) | 607 |
| Bsp1286I | GDGCHC | 2 cut(s) | 356, 1220 |
| Bsp1407I | TGTACA | 1 cut(s) | 1081 |
| Bsp143I | GATC | 6 cut(s) | 460, 535, 841, 1023, 1607, 1694 |
| BspACI | CCGC | 7 cut(s) | 52, 69, 127, 142, 836, 1305, 1583 |
| BspANI | GGCC | 6 cut(s) | 265, 450, 653, 761, 1304, 1802 |
| BspCNI | CTCAG | 4 cut(s) | 280, 1205, 2044, 2082 |
| BspDI | ATCGAT | 1 cut(s) | 249 |
| BspFNI | CGCG | 2 cut(s) | 189, 411 |
| BspLI | GGNNCC | 2 cut(s) | 1219, 1492 |
| BspMAI | CTGCAG | 1 cut(s) | 1956 |
| BspMI | ACCTGC | 1 cut(s) | 670 |
| BspPI | GGATC | 3 cut(s) | 530, 1031, 1602 |
| BspQI | GCTCTTC | 2 cut(s) | 151, 356 |
| BspT104I | TTCGAA | 1 cut(s) | 607 |
| BspTNI | GGTCTC | 2 cut(s) | 128, 752 |
| BsrBI | CCGCTC | 1 cut(s) | 144 |
| BsrDI | GCAATG | 3 cut(s) | 390, 1398, 1452 |
| BsrGI | TGTACA | 1 cut(s) | 1081 |
| BsrI | ACTGG | 3 cut(s) | 331, 483, 1492 |
| BssECI | CCNNGG | 2 cut(s) | 401, 1327 |
| BssMI | GATC | 6 cut(s) | 460, 535, 841, 1023, 1607, 1694 |
| BssSI | CACGAG | 1 cut(s) | 1856 |
| BssT1I | CCWWGG | 1 cut(s) | 401 |
| Bst2BI | CACGAG | 1 cut(s) | 1856 |
| Bst2UI | CCWGG | 3 cut(s) | 452, 1233, 1329 |
| Bst4CI | ACNGT | 8 cut(s) | 284, 754, 1062, 1147, 1257, 1533, 1705, 1875 |
| Bst6I | CTCTTC | 3 cut(s) | 151, 356, 1008 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1655 |
| BstAUI | TGTACA | 1 cut(s) | 1081 |
| BstBI | TTCGAA | 1 cut(s) | 607 |
| BstC8I | GCNNGC | 6 cut(s) | 187, 386, 700, 838, 853, 1866 |
| BstDEI | CTNAG | 5 cut(s) | 267, 1128, 1192, 2031, 2069 |
| BstF5I | GGATG | 4 cut(s) | 931, 1311, 1759, 1998 |
| BstFNI | CGCG | 2 cut(s) | 189, 411 |
| BstHHI | GCGC | 2 cut(s) | 191, 411 |
| BstKTI | GATC | 6 cut(s) | 463, 538, 844, 1026, 1610, 1697 |
| BstMAI | GTCTC | 3 cut(s) | 128, 752, 1668 |
| BstMBI | GATC | 6 cut(s) | 460, 535, 841, 1023, 1607, 1694 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 16, 135, 385, 1158, 1451, 1646, 1655, 1911, 2033 |
| BstNI | CCWGG | 3 cut(s) | 452, 1233, 1329 |
| BstNSI | RCATGY | 2 cut(s) | 388, 702 |
| BstSCI | CCNGG | 4 cut(s) | 450, 1231, 1327, 1988 |
| BstSFI | CTRYAG | 2 cut(s) | 1704, 1952 |
| BstUI | CGCG | 2 cut(s) | 189, 411 |
| BstV2I | GAAGAC | 2 cut(s) | 966, 1220 |
| Bsu15I | ATCGAT | 1 cut(s) | 249 |
| Bsu36I | CCTNAGG | 2 cut(s) | 267, 1192 |
| BsuI | GTATCC | 1 cut(s) | 1427 |
| BsuRI | GGCC | 6 cut(s) | 265, 450, 653, 761, 1304, 1802 |
| BsuTUI | ATCGAT | 1 cut(s) | 249 |
| BtsCI | GGATG | 4 cut(s) | 931, 1311, 1759, 1998 |
| BtsI | GCAGTG | 2 cut(s) | 893, 1883 |
| BtsIMutI | CAGTG | 6 cut(s) | 289, 324, 490, 893, 1058, 1883 |
| BveI | ACCTGC | 1 cut(s) | 670 |
| Cac8I | GCNNGC | 6 cut(s) | 187, 386, 700, 838, 853, 1866 |
| CfoI | GCGC | 2 cut(s) | 191, 411 |
| Cfr13I | GGNCC | 2 cut(s) | 263, 1800 |
| ClaI | ATCGAT | 1 cut(s) | 249 |
| CseI | GACGC | 2 cut(s) | 400, 415 |
| Csp6I | GTAC | 3 cut(s) | 659, 1082, 1211 |
| CviAII | CATG | 5 cut(s) | 385, 436, 699, 862, 2005 |
| CviQI | GTAC | 3 cut(s) | 659, 1082, 1211 |
| DdeI | CTNAG | 5 cut(s) | 267, 1128, 1192, 2031, 2069 |
| DpnI | GATC | 6 cut(s) | 462, 537, 843, 1025, 1609, 1696 |
| DpnII | GATC | 6 cut(s) | 460, 535, 841, 1023, 1607, 1694 |
| DraI | TTTAAA | 1 cut(s) | 1009 |
| DriI | GACNNNNNGTC | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 3 cut(s) | 151, 356, 1008 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 202 |
| EarI | CTCTTC | 3 cut(s) | 151, 356, 1008 |
| EciI | GGCGGA | 1 cut(s) | 116 |
| Ecl136II | GAGCTC | 1 cut(s) | 354 |
| Eco130I | CCWWGG | 1 cut(s) | 401 |
| Eco147I | AGGCCT | 1 cut(s) | 761 |
| Eco24I | GRGCYC | 2 cut(s) | 356, 1220 |
| Eco31I | GGTCTC | 2 cut(s) | 128, 752 |
| Eco53kI | GAGCTC | 1 cut(s) | 354 |
| Eco57I | CTGAAG | 2 cut(s) | 888, 1597 |
| Eco81I | CCTNAGG | 2 cut(s) | 267, 1192 |
| Eco88I | CYCGRG | 1 cut(s) | 1797 |
| EcoICRI | GAGCTC | 1 cut(s) | 354 |
| EcoRII | CCWGG | 3 cut(s) | 450, 1231, 1327 |
| EcoT14I | CCWWGG | 1 cut(s) | 401 |
| EcoT22I | ATGCAT | 1 cut(s) | 1660 |
| EcoT38I | GRGCYC | 2 cut(s) | 356, 1220 |
| ErhI | CCWWGG | 1 cut(s) | 401 |
| FaeI | CATG | 5 cut(s) | 388, 439, 702, 865, 2008 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1505, 1537, 1532, 1564 |
| FaqI | GGGAC | 1 cut(s) | 1861 |
| FatI | CATG | 5 cut(s) | 384, 435, 698, 861, 2004 |
| FauI | CCCGC | 1 cut(s) | 829 |
| FbaI | TGATCA | 1 cut(s) | 460 |
| FblI | GTMKAC | 1 cut(s) | 999 |
| FokI | GGATG | 4 cut(s) | 938, 1298, 1766, 2005 |
| FriOI | GRGCYC | 2 cut(s) | 356, 1220 |
| GlaI | GCGC | 2 cut(s) | 190, 410 |
| GsuI | CTGGAG | 3 cut(s) | 466, 1350, 2039 |
| HaeIII | GGCC | 6 cut(s) | 265, 450, 653, 761, 1304, 1802 |
| HapII | CCGG | 1 cut(s) | 1990 |
| HgaI | GACGC | 2 cut(s) | 400, 415 |
| HhaI | GCGC | 2 cut(s) | 191, 411 |
| Hin1II | CATG | 5 cut(s) | 388, 439, 702, 865, 2008 |
| Hin6I | GCGC | 2 cut(s) | 189, 409 |
| HinP1I | GCGC | 2 cut(s) | 189, 409 |
| HincII | GTYRAC | 1 cut(s) | 280 |
| HindII | GTYRAC | 1 cut(s) | 280 |
| HindIII | AAGCTT | 1 cut(s) | 377 |
| HinfI | GANTC | 9 cut(s) | 79, 197, 257, 472, 477, 489, 1270, 1286, 2001 |
| HpaI | GTTAAC | 1 cut(s) | 280 |
| HpaII | CCGG | 1 cut(s) | 1990 |
| HphI | GGTGA | 5 cut(s) | 23, 532, 742, 1346, 1982 |
| Hpy166II | GTNNAC | 6 cut(s) | 280, 488, 1000, 1082, 1211, 1790 |
| Hpy188I | TCNGA | 7 cut(s) | 460, 868, 1316, 1351, 1373, 1414, 1616 |
| Hpy188III | TCNNGA | 7 cut(s) | 430, 628, 636, 782, 967, 1673, 1692 |
| Hpy8I | GTNNAC | 6 cut(s) | 280, 488, 1000, 1082, 1211, 1790 |
| Hpy99I | CGWCG | 2 cut(s) | 374, 1808 |
| HpyAV | CCTTC | 7 cut(s) | 118, 202, 603, 977, 1060, 1621, 1936 |
| HpyCH4III | ACNGT | 8 cut(s) | 284, 754, 1062, 1147, 1257, 1533, 1705, 1875 |
| HpyCH4IV | ACGT | 1 cut(s) | 789 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 16, 135, 385, 1158, 1451, 1646, 1655, 1911, 2033 |
| HpyF3I | CTNAG | 5 cut(s) | 267, 1128, 1192, 2031, 2069 |
| HpySE526I | ACGT | 1 cut(s) | 789 |
| Hsp92II | CATG | 5 cut(s) | 388, 439, 702, 865, 2008 |
| HspAI | GCGC | 2 cut(s) | 189, 409 |
| Ksp22I | TGATCA | 1 cut(s) | 460 |
| KspAI | GTTAAC | 1 cut(s) | 280 |
| Kzo9I | GATC | 6 cut(s) | 460, 535, 841, 1023, 1607, 1694 |
| LguI | GCTCTTC | 2 cut(s) | 151, 356 |
| LmnI | GCTCC | 6 cut(s) | 406, 1223, 1585, 1861, 1911, 2024 |
| LweI | GCATC | 6 cut(s) | 873, 1327, 1394, 1412, 1744, 1768 |
| MaeII | ACGT | 1 cut(s) | 789 |
| MaeIII | GTNAC | 2 cut(s) | 1504, 1849 |
| MalI | GATC | 6 cut(s) | 462, 537, 843, 1025, 1609, 1696 |
| MbiI | CCGCTC | 1 cut(s) | 144 |
| MboI | GATC | 6 cut(s) | 460, 535, 841, 1023, 1607, 1694 |
| MhlI | GDGCHC | 2 cut(s) | 356, 1220 |
| MlyI | GAGTC | 5 cut(s) | 73, 191, 266, 481, 483 |
| MmeI | TCCRAC | 2 cut(s) | 772, 1903 |
| Mph1103I | ATGCAT | 1 cut(s) | 1660 |
| MroXI | GAANNNNTTC | 3 cut(s) | 365, 603, 1095 |
| MseI | TTAA | 7 cut(s) | 279, 978, 1008, 1355, 1484, 1518, 1898 |
| MslI | CAYNNNNRTG | 2 cut(s) | 54, 1041 |
| MspA1I | CMGCKG | 1 cut(s) | 1598 |
| MspI | CCGG | 1 cut(s) | 1990 |
| MspR9I | CCNGG | 4 cut(s) | 452, 1233, 1329, 1990 |
| Mva1269I | GAATGC | 1 cut(s) | 1660 |
| MvaI | CCWGG | 3 cut(s) | 452, 1233, 1329 |
| MvnI | CGCG | 2 cut(s) | 189, 411 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 16, 135, 385, 1158, 1451, 1646, 1655, 1911, 2033 |
| NciI | CCSGG | 1 cut(s) | 1990 |
| NdeII | GATC | 6 cut(s) | 460, 535, 841, 1023, 1607, 1694 |
| NlaIII | CATG | 5 cut(s) | 388, 439, 702, 865, 2008 |
| NlaIV | GGNNCC | 2 cut(s) | 1219, 1492 |
| NmeAIII | GCCGAG | 1 cut(s) | 161 |
| NmuCI | GTSAC | 1 cut(s) | 1504 |
| NsiI | ATGCAT | 1 cut(s) | 1660 |
| NspI | RCATGY | 2 cut(s) | 388, 702 |
| NspV | TTCGAA | 1 cut(s) | 607 |
| OliI | CACNNNNGTG | 1 cut(s) | 54 |
| PaeI | GCATGC | 2 cut(s) | 388, 702 |
| PceI | AGGCCT | 1 cut(s) | 761 |
| PciSI | GCTCTTC | 2 cut(s) | 151, 356 |
| PctI | GAATGC | 1 cut(s) | 1660 |
| PdmI | GAANNNNTTC | 3 cut(s) | 365, 603, 1095 |
| PfeI | GAWTC | 4 cut(s) | 477, 1270, 1286, 2001 |
| PleI | GAGTC | 5 cut(s) | 73, 191, 265, 480, 483 |
| PpsI | GAGTC | 5 cut(s) | 73, 191, 265, 480, 483 |
| PshBI | ATTAAT | 1 cut(s) | 978 |
| Psp124BI | GAGCTC | 1 cut(s) | 356 |
| Psp1406I | AACGTT | 1 cut(s) | 789 |
| Psp6I | CCWGG | 3 cut(s) | 450, 1231, 1327 |
| PspGI | CCWGG | 3 cut(s) | 450, 1231, 1327 |
| PspN4I | GGNNCC | 2 cut(s) | 1219, 1492 |
| PspPI | GGNCC | 2 cut(s) | 263, 1800 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 762, 794 |
| PstI | CTGCAG | 1 cut(s) | 1956 |
| PvuII | CAGCTG | 1 cut(s) | 1598 |
| RsaI | GTAC | 3 cut(s) | 660, 1083, 1212 |
| RsaNI | GTAC | 3 cut(s) | 659, 1082, 1211 |
| RseI | CAYNNNNRTG | 2 cut(s) | 54, 1041 |
| SacI | GAGCTC | 1 cut(s) | 356 |
| SapI | GCTCTTC | 2 cut(s) | 151, 356 |
| SaqAI | TTAA | 7 cut(s) | 279, 978, 1008, 1355, 1484, 1518, 1898 |
| Sau3AI | GATC | 6 cut(s) | 460, 535, 841, 1023, 1607, 1694 |
| Sau96I | GGNCC | 2 cut(s) | 263, 1800 |
| SchI | GAGTC | 5 cut(s) | 73, 191, 266, 481, 483 |
| ScrFI | CCNGG | 4 cut(s) | 452, 1233, 1329, 1990 |
| SduI | GDGCHC | 2 cut(s) | 356, 1220 |
| SfaNI | GCATC | 6 cut(s) | 873, 1327, 1394, 1412, 1744, 1768 |
| SfcI | CTRYAG | 2 cut(s) | 1704, 1952 |
| SfuI | TTCGAA | 1 cut(s) | 607 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 54, 1041 |
| SmlI | CTYRAG | 1 cut(s) | 1820 |
| SmoI | CTYRAG | 1 cut(s) | 1820 |
| SphI | GCATGC | 2 cut(s) | 388, 702 |
| SseBI | AGGCCT | 1 cut(s) | 761 |
| SsiI | CCGC | 7 cut(s) | 52, 69, 127, 142, 836, 1305, 1583 |
| SstI | GAGCTC | 1 cut(s) | 356 |
| StuI | AGGCCT | 1 cut(s) | 761 |
| StyD4I | CCNGG | 4 cut(s) | 450, 1231, 1327, 1988 |
| StyI | CCWWGG | 1 cut(s) | 401 |
| TaaI | ACNGT | 8 cut(s) | 284, 754, 1062, 1147, 1257, 1533, 1705, 1875 |
| TaiI | ACGT | 1 cut(s) | 792 |
| TatI | WGTACW | 1 cut(s) | 1081 |
| TauI | GCSGC | 2 cut(s) | 71, 1307 |
| TfiI | GAWTC | 4 cut(s) | 477, 1270, 1286, 2001 |
| Tru1I | TTAA | 7 cut(s) | 279, 978, 1008, 1355, 1484, 1518, 1898 |
| Tru9I | TTAA | 7 cut(s) | 279, 978, 1008, 1355, 1484, 1518, 1898 |
| TscAI | CASTG | 6 cut(s) | 289, 331, 490, 900, 1065, 1890 |
| TseFI | GTSAC | 1 cut(s) | 1504 |
| Tsp45I | GTSAC | 1 cut(s) | 1504 |
| TspDTI | ATGAA | 6 cut(s) | 138, 452, 634, 996, 1249, 1955 |
| TspRI | CASTG | 6 cut(s) | 289, 331, 490, 900, 1065, 1890 |
| VspI | ATTAAT | 1 cut(s) | 978 |
| XapI | RAATTY | 7 cut(s) | 504, 543, 603, 641, 970, 1004, 1893 |
| XceI | RCATGY | 2 cut(s) | 388, 702 |
| XmiI | GTMKAC | 1 cut(s) | 999 |
| XmnI | GAANNNNTTC | 3 cut(s) | 365, 603, 1095 |
| Zsp2I | ATGCAT | 1 cut(s) | 1660 |